SNP Profiles of PA 70 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCCCTTGGCCCCCCCCGGCCGGTTAACT
1._GC-04-053-3-17
GGCCTTGGCCCCCCCCCCGG__TTAACT
2._PA_70_[PER]
GG______CC__CCCC__GG________
3._RUQ_33
GGCCTTGGCC____CCCCGG______CT
4._PA_70_[PER]
GG______CC__CCCC__GG________
5._RUQ_33
GG______CC__CCCC__GG________
6._RUQ_33
GG________________GG______CT
7._PA_70_[PER]
GG______TT__TTCC__CG________
8._GC-04-53-3-17
CCGG__GGGG__GGGG__CCGGAA__AG
9._RUQ_33
CCGG__GGGG__GGGG__CCGGAA__AG
10._MITC-000025
CCGG__GGGG__GGGG__CCGGAA__AG
11._MITC-000026
CCGG__GGGG__GGGG__CCGGAA__AG
12._PA_70_[PER]_Fld#_185_Plt#_1
CGGG__GGGG__GGGG__CCGGAC__GG
13._GC-04-053-3-17
GGTTAAAATTCCTTCCCGCGAAGTGGCT
 15 16 17 18 19 20 21 22 23 24 25 26   
_Input profile
ACCGCCTTAAGGAGGGAAGGCCAAX_XX_X
1._GC-04-053-3-17
ACCGCCTTAAGGAGCCAAGGCCAAX_XX_X
2._PA_70_[PER]
ACCG____AA__AG__AA__CCAAX_XX_X
3._RUQ_33
ACCGCC__AAGGAGCCAAGGCCAAX_XX_X
4._PA_70_[PER]
ACCG____AA__AGCCAA__CCAAX_XX_X
5._RUQ_33
ACCG____AA__AGCCAA__CCAAX_XX_X
6._RUQ_33
ACCG________AG________AAX_XX_X
7._PA_70_[PER]
ACCC____AT__AGCGAA__CCAAX_XX_X
8._GC-04-53-3-17
ACCGGGAAAAGGAGGGAAGGGGAAX_XX_X
9._RUQ_33
ACCGGGAAAAGGAGGGAAGGGGAAX_XX_X
10._MITC-000025
ACCGGGAAAAGGAGGGAAGGGGAAX_XX_X
11._MITC-000026
ACCGGGAAAAGGAGGGAAGGGGAAX_XX_X
12._PA_70_[PER]_Fld#_185_Plt#_1
CCGGGGAGAAGGAGGGACGGAGAAX_XX_X
13._GC-04-053-3-17
ACCCCGCTATAAAGCGAAAGCCAAX_XX_X

Input profile: PA_70_[PER] PA70[PER]

 
Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

1._PA_70_[PER] GC-04-053-3-17

84 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2 (verde)
 Mars, 2018

2._PA_70_[PER]

83.3 %
12 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D634
 Dapeng Zhang, 2016

3._PA_70_[PER] RUQ_33

80 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._PA_70_[PER]

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 6 > FP
 Dapeng Zhang, 2016

5._PA_70_[PER] RUQ_33

76.9 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._PA_70_[PER] RUQ_33

71.4 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

7._PA_70_[PER]

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 2 > FP
 Dapeng Zhang, 2016

8._PA_70_[PER] GC-04-53-3-17

59.1 %
22 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 4, Block: 3, Rep: 17, Tree: 6 > FP2 (verde)
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

9._PA_70_[PER] RUQ_33

59.1 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

10._PA_70_[PER] MITC-000025

59.1 %
22 shared markers

USDA-SHRS, United States of America
 Mars, 2018

11._PA_70_[PER] MITC-000026

59.1 %
22 shared markers

USDA-SHRS, United States of America
 Mars, 2018

12._PA_70_[PER] PA_70_[PER]_Fld#_185_Plt#_1

50 %
22 shared markers

USDA-TARS, United States of America
Location: Field: 185, Tree: 1
 Mars, 2018

13._PA_70_[PER] GC-04-053-3-17

48.1 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1 (roxo)
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144