SNP Profiles of PA 156/T1   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCCTTTGGCCCCCCCCGGCCGGTTAATT
1._PA_156_[PER]___
GGCTTTGGCCCCCCCCCCGG__TTAATT
2._PA_156_[PER]___
GGCTTTGGCCCCCCCCCCGG__TTAATT
3._PA_156_[PER]___
GGCTTTGGCCCCCCCCCCGG__TTAATT
4._PA_156_[PER]___
GGCTTTGGCCCCCCCCCCGG__TTAATT
5._PA_156_[PER]___
GG______CC__CCCC__GG________
6._PA_156_[PER]___
GGCTTTGGCCCCCCCCCCGG__TTAATT
7._PA_156_[PER]___
GGCTTTGGCC____CCCCGG______TT
8._PA_156_[PER]___
GG______CC__CCCC__GG________
9._PA_156_[PER]___
GG______CC__CCCC__GG________
10._PA_156_[PER]___
GG______CC__CCCC__GG________
11._PA_156_[PER]___
GG______CC__CCCC__GG________
12._PA_156_[PER]___
GG______CC__CCCC__GG________
13._PA_156_[PER]___
GG______CC__CCCC__GG________
14._PA_156_[PER]___
GG______CC__CCCC__GG________
15._PA_156_[PER]___
GG________________GG______TT
16._PA_156_[PER]___
GGCTTTAGCCCCTTCTCCCG__TTAACT
17._PA_156_[PER]___
GGCTTTAGCCCCTTCTCCCG__TTAACT
18._PA_156_[PER]___
GGCTTTAGCCCCTTCTCCCG__TTAACT
19._PA_156_[PER]___
GGCTTTAGCCCCTTCTCCCG__TTAACT
20._PA_156_[PER]___
GGCTTTAGCCCCTTCTCCCG__TTAACT
21._PA_156_[PER]___
CCAG__GGGG__GGGG__CCGGAA__AA
22._PA_156_[PER]___
GG______CC__TTCT__CG________
23._PA_156_[PER]___
GG______CC__TTCT__CG________
24._PA_156_[PER]___
GG______CC__TTCT__CG________
25._PA_156_[PER]___
GG______CC__TTCT__CG________
26._PA_156_[PER]___
GG______CC__TTCT__CG________
 15 16 17 18 19 20 21 22 23 24 25 26   
_Input profile
CCCGCCTTAAGGAAGGAAGGCCACX_XX_X
1._PA_156_[PER]___
CCCGCCTTAAGGAACCAAGGCCACX_XX_X
2._PA_156_[PER]___
CCCGCCTTAAGGAACCAAGGCCACX_XX_X
3._PA_156_[PER]___
CCCGCCTTAAGGAACCAAGGCCACX_XX_X
4._PA_156_[PER]___
CCCGCCTTAAGGAACCAAGGCCACX_XX_X
5._PA_156_[PER]___
CCCG____AA__AA__AA__CCACX_XX_X
6._PA_156_[PER]___
CCCGCCTTAAGGAACCAAGG__ACX_XX_X
7._PA_156_[PER]___
CCCGCC__AAGGAACCAAGGCCACX_XX_X
8._PA_156_[PER]___
CCCG____AA__AACCAA__CCACX_XX_X
9._PA_156_[PER]___
CCCG____AA__AACCAA__CCACX_XX_X
10._PA_156_[PER]___
CCCG____AA__AACCAA__CCACX_XX_X
11._PA_156_[PER]___
CCCG____AA__AACCAA__CCACX_XX_X
12._PA_156_[PER]___
CCCG____AA__AACCAA__CCACX_XX_X
13._PA_156_[PER]___
CCCG____AA__AACCAA__CCACX_XX_X
14._PA_156_[PER]___
CCCG____AA__AACCAA____ACX_XX_X
15._PA_156_[PER]___
CCCG________AA________ACX_XX_X
16._PA_156_[PER]___
AACGCCCTAAGGAACCAAGGCCAAX_XX_X
17._PA_156_[PER]___
AACGCCCTAAGGAACCAAGGCCAAX_XX_X
18._PA_156_[PER]___
AACGCCCTAAGGAACCAAGGCCAAX_XX_X
19._PA_156_[PER]___
AACGCCCTAAGGAACCAAGGCCAAX_XX_X
20._PA_156_[PER]___
AACGCCCTAAGGAACCAAGG__AAX_XX_X
21._PA_156_[PER]___
CCCGGGAAAAGGAAGGAAGGGGACX_XX_X
22._PA_156_[PER]___
AACG____AA__AACCAA__CCAAX_XX_X
23._PA_156_[PER]___
AACG____AA__AACCAA__CCAAX_XX_X
24._PA_156_[PER]___
AACG____AA__AACCAA__CCAAX_XX_X
25._PA_156_[PER]___
AACG____AA__AACCAA__CCAAX_XX_X
26._PA_156_[PER]___
AACG____AA__AACCAA____AAX_XX_X

Input profile: PA_156_[PER] PA156[PER]

 
Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

1._PA_156_[PER] GC-05-137-3-39

84 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

2._PA_156_[PER] GC-05-137-3-39

84 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

3._PA_156_[PER] GC-05-137-3-39

84 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

4._PA_156_[PER] GC-05-137-3-39

84 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._PA_156_[PER]

83.3 %
12 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

6._PA_156_[PER] GC-05-137-3-39

83.3 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._PA_156_[PER] RUQ_1531

80 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

8._PA_156_[PER]

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

9._PA_156_[PER]

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

10._PA_156_[PER]

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

11._PA_156_[PER]

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

12._PA_156_[PER] RUQ_1531

76.9 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

13._PA_156_[PER]

76.9 %
13 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

14._PA_156_[PER]

75 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016

15._PA_156_[PER] RUQ_1531

71.4 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

16._PA_156_[PER] GC-05-138-3-40

68 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

17._PA_156_[PER] GC-05-138-3-40

68 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

18._PA_156_[PER] GC-05-138-3-40

68 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

19._PA_156_[PER] GC-05-138-3-40

68 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

20._PA_156_[PER] GC-05-138-3-40

66.7 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

21._PA_156_[PER] RUQ_1531

59.1 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

22._PA_156_[PER]

57.7 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 3 > FP
 Dapeng Zhang, 2016

23._PA_156_[PER]

57.7 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 4
 Dapeng Zhang, 2016

24._PA_156_[PER]

57.7 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 5
 Dapeng Zhang, 2016

25._PA_156_[PER]

57.7 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 1 > FP
 Dapeng Zhang, 2016

26._PA_156_[PER]

54.2 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5340 2 > FP
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144