SNP Profiles of PA 156 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCCTTTGGCCCCCCCCGGCCGGTTAATT
1._GC-05-137-3-39
GGCTTTGGCCCCCCCCCCGG__TTAATT
2._GC-05-137-3-39
GGCTTTGGCCCCCCCCCCGG__TTAATT
3._GC-05-137-3-39
GGCTTTGGCCCCCCCCCCGG__TTAATT
4._GC-05-137-3-39
GGCTTTGGCCCCCCCCCCGG__TTAATT
5._PA_156_[PER]
GG______CC__CCCC__GG________
6._GC-05-137-3-39
GGCTTTGGCCCCCCCCCCGG__TTAATT
7._RUQ_1531
GGCTTTGGCC____CCCCGG______TT
8._PA_156_[PER]
GG______CC__CCCC__GG________
9._PA_156_[PER]
GG______CC__CCCC__GG________
10._PA_156_[PER]
GG______CC__CCCC__GG________
11._PA_156_[PER]
GG______CC__CCCC__GG________
12._RUQ_1531
GG______CC__CCCC__GG________
13._PA_156_[PER]
GG______CC__CCCC__GG________
14._PA_156_[PER]
GG______CC__CCCC__GG________
15._RUQ_1531
GG________________GG______TT
16._GC-05-138-3-40
GGCTTTAGCCCCTTCTCCCG__TTAACT
17._GC-05-138-3-40
GGCTTTAGCCCCTTCTCCCG__TTAACT
18._GC-05-138-3-40
GGCTTTAGCCCCTTCTCCCG__TTAACT
19._GC-05-138-3-40
GGCTTTAGCCCCTTCTCCCG__TTAACT
20._GC-05-138-3-40
GGCTTTAGCCCCTTCTCCCG__TTAACT
21._RUQ_1531
CCAG__GGGG__GGGG__CCGGAA__AA
22._PA_156_[PER]
GG______CC__TTCT__CG________
23._PA_156_[PER]
GG______CC__TTCT__CG________
24._PA_156_[PER]
GG______CC__TTCT__CG________
25._PA_156_[PER]
GG______CC__TTCT__CG________
26._PA_156_[PER]
GG______CC__TTCT__CG________
 15 16 17 18 19 20 21 22 23 24 25 26   
_Input profile
CCCGCCTTAAGGAAGGAAGGCCACX_XX_X
1._GC-05-137-3-39
CCCGCCTTAAGGAACCAAGGCCACX_XX_X
2._GC-05-137-3-39
CCCGCCTTAAGGAACCAAGGCCACX_XX_X
3._GC-05-137-3-39
CCCGCCTTAAGGAACCAAGGCCACX_XX_X
4._GC-05-137-3-39
CCCGCCTTAAGGAACCAAGGCCACX_XX_X
5._PA_156_[PER]
CCCG____AA__AA__AA__CCACX_XX_X
6._GC-05-137-3-39
CCCGCCTTAAGGAACCAAGG__ACX_XX_X
7._RUQ_1531
CCCGCC__AAGGAACCAAGGCCACX_XX_X
8._PA_156_[PER]
CCCG____AA__AACCAA__CCACX_XX_X
9._PA_156_[PER]
CCCG____AA__AACCAA__CCACX_XX_X
10._PA_156_[PER]
CCCG____AA__AACCAA__CCACX_XX_X
11._PA_156_[PER]
CCCG____AA__AACCAA__CCACX_XX_X
12._RUQ_1531
CCCG____AA__AACCAA__CCACX_XX_X
13._PA_156_[PER]
CCCG____AA__AACCAA__CCACX_XX_X
14._PA_156_[PER]
CCCG____AA__AACCAA____ACX_XX_X
15._RUQ_1531
CCCG________AA________ACX_XX_X
16._GC-05-138-3-40
AACGCCCTAAGGAACCAAGGCCAAX_XX_X
17._GC-05-138-3-40
AACGCCCTAAGGAACCAAGGCCAAX_XX_X
18._GC-05-138-3-40
AACGCCCTAAGGAACCAAGGCCAAX_XX_X
19._GC-05-138-3-40
AACGCCCTAAGGAACCAAGGCCAAX_XX_X
20._GC-05-138-3-40
AACGCCCTAAGGAACCAAGG__AAX_XX_X
21._RUQ_1531
CCCGGGAAAAGGAAGGAAGGGGACX_XX_X
22._PA_156_[PER]
AACG____AA__AACCAA__CCAAX_XX_X
23._PA_156_[PER]
AACG____AA__AACCAA__CCAAX_XX_X
24._PA_156_[PER]
AACG____AA__AACCAA__CCAAX_XX_X
25._PA_156_[PER]
AACG____AA__AACCAA__CCAAX_XX_X
26._PA_156_[PER]
AACG____AA__AACCAA____AAX_XX_X

Input profile: PA_156_[PER] PA156[PER]

 
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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

1._PA_156_[PER] GC-05-137-3-39

84 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

2._PA_156_[PER] GC-05-137-3-39

84 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

3._PA_156_[PER] GC-05-137-3-39

84 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

4._PA_156_[PER] GC-05-137-3-39

84 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._PA_156_[PER]

83.3 %
12 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D295 T1
 Dapeng Zhang, 2016

6._PA_156_[PER] GC-05-137-3-39

83.3 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._PA_156_[PER] RUQ_1531

80 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

8._PA_156_[PER]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 2
 Dapeng Zhang, 2016

9._PA_156_[PER]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 3 > FP
 Dapeng Zhang, 2016

10._PA_156_[PER]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 4 > FP
 Dapeng Zhang, 2016

11._PA_156_[PER]

76.9 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 5 > FP
 Dapeng Zhang, 2016

12._PA_156_[PER] RUQ_1531

76.9 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

13._PA_156_[PER]

76.9 %
13 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row1 C0184 28
 Dapeng Zhang, 2016

14._PA_156_[PER]

75 %
12 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5339 1
 Dapeng Zhang, 2016

15._PA_156_[PER] RUQ_1531

71.4 %
7 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Par
0.972

16._PA_156_[PER] GC-05-138-3-40

68 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

17._PA_156_[PER] GC-05-138-3-40

68 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

18._PA_156_[PER] GC-05-138-3-40

68 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

19._PA_156_[PER] GC-05-138-3-40

68 %
25 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

20._PA_156_[PER] GC-05-138-3-40

66.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

21._PA_156_[PER] RUQ_1531

59.1 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

22._PA_156_[PER]

57.7 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 3 > FP
 Dapeng Zhang, 2016

23._PA_156_[PER]

57.7 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 4
 Dapeng Zhang, 2016

24._PA_156_[PER]

57.7 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 5
 Dapeng Zhang, 2016

25._PA_156_[PER]

57.7 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 1 > FP
 Dapeng Zhang, 2016

26._PA_156_[PER]

54.2 %
12 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5340 2 > FP
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144