SNP Profiles of ICS 39   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._ICS 39___
______GGGGAT___AG______CTCTACCT___
2._ICS 39___
______GGGGAT___AG______CTCTACCT___
3._ICS 39___
______GGGGAT___AG______CTCTACCT___
4._ICS 39___
______GGGGAT___AG______CTCTACCT___
5._ICS 39___
______GGGGAT___AG______CTCTACCT___
6._ICS 39___
______GGGGAT___AG______CTCTACCT___
7._ICS 39___
______GGGGAT___AG______CTCTACCT___
8._ICS 39___
______GG___AT___________________________
9._ICS 39___
______GG___AT___________________________
10._ICS 39___
______GG___AT___________________________
11._ICS 39___
______GG___AT___________________________
12._ICS 39___
______GG___AT___________________________
13._ICS 39___
______GG___AT___________________________
14._ICS 39___
______GG___AT___________________________
15._ICS 39___
CTAA_________TT___CCGG____________GG
16._ICS 39___
______GGCCTT___GG______GGAACCAA___
17._ICS 39___
______GG___TT___________________________
18._ICS 39___
______GG___AT___________________________
19._ICS 39___
______GG___AT___________________________
20._ICS 39___
______GGCCAT___AG______AGAGACAG___
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._ICS 39___
___ACGTCTCCAG______AC___CGAGCCCT
2._ICS 39___
___ACGTCTCCAG____________CGAGCCCT
3._ICS 39___
___ACGTCTCCAG______AC___CGAGCCCT
4._ICS 39___
___ACGTCTCCAG______AC___CGAGCCCT
5._ICS 39___
___ACGTCTATAG______AC___CGAGGGCT
6._ICS 39___
___ACGTCTATAG______AC___CGAGGGCT
7._ICS 39___
___ACGTCTATAG______AC___CGAGGGCT
8._ICS 39___
___ACGTCT____________AC___CGAG___CT
9._ICS 39___
___ACGTCT____________AC___CGAG___CT
10._ICS 39___
___ACGTCT____________AC___CGAG___CT
11._ICS 39___
___ACGTCT____________AC___CGAG___CT
12._ICS 39___
___ACGTCT____________AC___CGAG___CT
13._ICS 39___
___ACGTCT____________AC___CGAG___CT
14._ICS 39___
___ACGTCT__________________CGAG___CT
15._ICS 39___
ATAC____________CTAG___GT___AG______
16._ICS 39___
___ACCCAGAAGG______AC___GGAGGGAG
17._ICS 39___
___ACGGCT____________AC___CCAG___CT
18._ICS 39___
___ACGTCT____________AC___CGAG___CT
19._ICS 39___
___ACGTCT____________AC___GGAG___CT
20._ICS 39___
___ACACAGATAG______AC___CGAGGGAG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._ICS 39___
______ATAG___AGATCTAG___GGATCGAG
2._ICS 39___
______ATAG___AGATCTAG___GGATCGAG
3._ICS 39___
______ATAG___AGATCTAG___GGATCGAG
4._ICS 39___
______ATAG___AGATCTAG___GGATCGAG
5._ICS 39___
______ATAG___AGATCTAG___GGATCGAG
6._ICS 39___
______ATAG___AGATCTAG___GGATCGAG
7._ICS 39___
______ATAG___AGATCTAG___GGATCGAG
8._ICS 39___
__________________AT_________GG______AG
9._ICS 39___
__________________AT_________GG______AG
10._ICS 39___
__________________AT_________GG______AG
11._ICS 39___
__________________AT_________GG______AG
12._ICS 39___
__________________AT_________GG______AG
13._ICS 39___
__________________AT_________GG______AG
14._ICS 39___
__________________AT_________GG______AG
15._ICS 39___
TTAA___GGAC____________CC____________
16._ICS 39___
______TTGG___GGATAAGG___GGAAGG___
17._ICS 39___
__________________AT_________GG______AA
18._ICS 39___
__________________AT_________GG______AG
19._ICS 39___
__________________AT_________AG______AG
20._ICS 39___
______ATAG___AGATAGAG___GGATCG___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._ICS 39___
CT___CC___CCCT___GGGTAACC___ACCC
2._ICS 39___
CT___CC___CCCT___GGGTAACC___ACCC
3._ICS 39___
CT___CC___CCCT___GGGTAACC___ACCC
4._ICS 39___
CT___CC___CCCT___GGGTAACC___ACCC
5._ICS 39___
______CC___CCCT___GGGTAACC___ACCC
6._ICS 39___
______CC___CCCT___GGGTAACC___ACCC
7._ICS 39___
______CC___CCCT___GGGTAACC___ACCC
8._ICS 39___
____________CCCT______GT___CC___AC___
9._ICS 39___
____________CCCT______GT___CC___AC___
10._ICS 39___
____________CCCT______GT___CC___AC___
11._ICS 39___
____________CCCT______GT___CC___AC___
12._ICS 39___
____________CCCT______GT___CC___AC___
13._ICS 39___
____________CCCT______GT___CC___AC___
14._ICS 39___
____________CCCT______GT___CC___AC___
15._ICS 39___
___AA___CCCC___AG_________GGTTAACC
16._ICS 39___
AA___AA___CC______AAACGGGG___AAGG
17._ICS 39___
____________CCCC______GT___GG___AA___
18._ICS 39___
____________CCCT______GT___CC___AC___
19._ICS 39___
____________CCCT______GT___CC___AC___
20._ICS 39___
AG___CC___CC______GGACAACG___ACGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._ICS 39___
AGCT_________GGAG___AGCTCTGTAG___
2._ICS 39___
AGCT_________GGAG___AGCTCTGTAG___
3._ICS 39___
AGCT_________GGAG______CTCTGTAG___
4._ICS 39___
AGCT_________GGAG___AGCT___GTAG___
5._ICS 39___
AGCT_________GGAG___AGCTCTGTAG___
6._ICS 39___
AGCT_________GGAG___AGCTCTGTAG___
7._ICS 39___
AGCT_________GGAG___AGCTCTGTAG___
8._ICS 39___
___CT_________GG_______________GT______
9._ICS 39___
___CT_________GG_______________GT______
10._ICS 39___
___CT_________GG_______________GT______
11._ICS 39___
___CT_________GG_______________GT______
12._ICS 39___
___CT_________GG_______________GT______
13._ICS 39___
___CT_________GG_______________GT______
14._ICS 39___
___CT_________GG_______________GT______
15._ICS 39___
______TTAGCCAA___CG______TTGGGGTT
16._ICS 39___
___GG____________AA___AA______CCGG___
17._ICS 39___
___CC_________AA_______________GG______
18._ICS 39___
___CT_________AG_______________GT______
19._ICS 39___
___CT_________AG_______________GT______
20._ICS 39___
___AG____________AA___AG______AAAG___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._ICS 39___
GTGTGT___CC___GGAACGCGCCCCGGTT
2._ICS 39___
GTGTGT___CC___GGAACGCGCCCCGGTT
3._ICS 39___
GTGTGT___CC___GGAACGCGCCCCGGTT
4._ICS 39___
GTGTGT___CC___GGAACGCGCCCCGGTT
5._ICS 39___
GTGTGT___CC___GGAACGCGCCCCGGTT
6._ICS 39___
GTGTGT___CC___GGAACGCGCCCCGGTT
7._ICS 39___
GTGTGT___CC___GGAACGCGCCCCGGTT
8._ICS 39___
________________________CG___CC______TT
9._ICS 39___
________________________CG___CC______TT
10._ICS 39___
________________________CG___CC______TT
11._ICS 39___
________________________CG___CC______TT
12._ICS 39___
________________________CG___CC______TT
13._ICS 39___
________________________CG___CC______TT
14._ICS 39___
________________________CG___CC______TT
15._ICS 39___
_________TTACATTT___CC_________GG___
16._ICS 39___
AAACAA___AC___CCGGGG___GGGGGGAG
17._ICS 39___
________________________CC___CC______CT
18._ICS 39___
________________________CG___CC______TT
19._ICS 39___
________________________CG___CC______TT
20._ICS 39___
ACCCAC___AC___CCAGCG___GGGGGGAA
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1._ICS 39___
GG______AACTAACT______CTCC___CTAA
2._ICS 39___
GGCT___AACTAACT______CTCC___CTAA
3._ICS 39___
GGCT___AACTAACT______CTCC___CTAA
4._ICS 39___
GGCT___AACTAACT______CTCC___CTAA
5._ICS 39___
GGCT___AACTAACT______CTCC___CTAA
6._ICS 39___
GGCT___AACTAACT______CTCC___CTAA
7._ICS 39___
GGCT___AACTAACT______CTCC___CTAA
8._ICS 39___
GG______AACTAA__________________CTAA
9._ICS 39___
GG______AACTAA__________________CTAA
10._ICS 39___
GG______AACTAA__________________CTAA
11._ICS 39___
GG______AACTAA__________________CTAA
12._ICS 39___
GG______AACTAA__________________CTAA
13._ICS 39___
GG______AACTAA__________________CTAA
14._ICS 39___
GG______AACTAA__________________CTAA
15._ICS 39___
______CG______AGCTCTAA______CC___AG
16._ICS 39___
GGGG___ATAAAG_________AA______AGAG
17._ICS 39___
GG______ATTTAG__________________CTAG
18._ICS 39___
GG______AACTAA__________________CTAA
19._ICS 39___
GG______AACTAA__________________CTAA
20._ICS 39___
GGAG___AAAGAA_________AG______AGAA
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1._ICS 39___
GTAACCAG___ATCTTTTTCTGT______CC
2._ICS 39___
GTAACCAG___ATCTTTTTCTGT______CC
3._ICS 39___
GTAACCAG___ATCTTTTTCTGT______CC
4._ICS 39___
GTAACCAG___ATCTTTTTCTGT______CC
5._ICS 39___
GTAACCAG___ATCTTTTTCTGT______CC
6._ICS 39___
GTAACCAG___ATCTTTTTCTGT______CC
7._ICS 39___
GTAACCAG___ATCTTTTTCTGT______CC
8._ICS 39___
___AA____________CT______CT____________
9._ICS 39___
___AA____________CT______CT____________
10._ICS 39___
___AA____________CT______CT____________
11._ICS 39___
___AA____________CT______CT____________
12._ICS 39___
___AA____________CT______CT____________
13._ICS 39___
___AA____________CT______CT____________
14._ICS 39___
___AA____________CT______CT____________
15._ICS 39___
____________TT___CC____________GGAA___
16._ICS 39___
CCAAGGGG_________AAAA___CC_________
17._ICS 39___
___AA____________CC______CC____________
18._ICS 39___
___AA____________CT______CT____________
19._ICS 39___
___AA____________CT______CT____________
20._ICS 39___
ACAAGGAG_________AAAA___AC_________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1._ICS 39___
GTCC______TTAAGG______TTCTCTCGAG
2._ICS 39___
GTCC______TTAAGG______TTCTCTCGAG
3._ICS 39___
GTCC______TTAAGG______TTCTCTCGAG
4._ICS 39___
GTCC______TTAAGG______TTCTCTCGAG
5._ICS 39___
GTCC______TTAAGG______TTCTCTCGAG
6._ICS 39___
GTCC______TTAAGG______TTCTCTCGAG
7._ICS 39___
GTCC______TTAAGG______TTCTCTCGAG
8._ICS 39___
GTCC_________AA_________TT___CTCGAG
9._ICS 39___
GTCC_________AA_________TT___CTCGAG
10._ICS 39___
GTCC_________AA_________TT___CTCGAG
11._ICS 39___
GTCC_________AA_________TT___CTCGAG
12._ICS 39___
GTCC_________AA_________TT___CTCGAG
13._ICS 39___
GTCC_________AA_________TT___CTCGAG
14._ICS 39___
GTCC_________AA_________TT___CTCGAG
15._ICS 39___
TT___GGTT_________AGGG_________CC___
16._ICS 39___
AAAA______AA___GG______AAGGAAGGAA
17._ICS 39___
TTTT_________AC_________TT___TTCCAG
18._ICS 39___
GTCC_________AA_________TT___CTGGAG
19._ICS 39___
GTCC_________AA_________TT___CTGGAG
20._ICS 39___
AAGG______AGAAGG______AAAGAGCCAG
 127 128 129 130 131 132 133 134       
1._ICS 39___
CT______ACAGCCAGAAX_XX_XX_XX_XX_XX_X
2._ICS 39___
CT______ACAGCCAGAAX_XX_XX_XX_XX_XX_X
3._ICS 39___
CT______ACAGCCAGAAX_XX_XX_XX_XX_XX_X
4._ICS 39___
CT______ACAGCCAGAAX_XX_XX_XX_XX_XX_X
5._ICS 39___
CT______ACAGCCAGAAX_XX_XX_XX_XX_XX_X
6._ICS 39___
CT______ACAGCCAGAAX_XX_XX_XX_XX_XX_X
7._ICS 39___
CT______ACAGCCAGAAX_XX_XX_XX_XX_XX_X
8._ICS 39___
CT_____________________X_XX_XX_XX_XX_XX_X
9._ICS 39___
CT_____________________X_XX_XX_XX_XX_XX_X
10._ICS 39___
CT_____________________X_XX_XX_XX_XX_XX_X
11._ICS 39___
CT_____________________X_XX_XX_XX_XX_XX_X
12._ICS 39___
CT_____________________X_XX_XX_XX_XX_XX_X
13._ICS 39___
CT_____________________X_XX_XX_XX_XX_XX_X
14._ICS 39___
CT_____________________X_XX_XX_XX_XX_XX_X
15._ICS 39___
___TTAA_______________X_XX_XX_XX_XX_XX_X
16._ICS 39___
GG______CC___ACAAACX_XX_XX_XX_XX_XX_X
17._ICS 39___
CC_____________________X_XX_XX_XX_XX_XX_X
18._ICS 39___
CT_____________________X_XX_XX_XX_XX_XX_X
19._ICS 39___
CT_____________________X_XX_XX_XX_XX_XX_X
20._ICS 39___
AG______AC___ACAGAAX_XX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._ICS_39 GC-01-85-5-02

Location: Field: 1, Block: 5, Rep: 2, Tree: PL5
Notes: PL5 FP2
 Mars, 2018

2._ICS_39 GC-01-85-5-02

Location: Field: 1, Block: 5, Rep: 2, Tree: PL8
Notes: PL8 FP1
 Mars, 2018

3._ICS_39 GC-01-85-5-02

Location: Field: 1, Block: 5, Rep: 2, Tree: PL14
Notes: PL14 FP3
 Mars, 2018

4._ICS_39 GC-01-85-5-02

Location: Field: 1, Block: 5, Rep: 2, Tree: PL15
Notes: PL15 FP4
 Mars, 2018

5._ICS_39 GC-01-085-5-02

Location: Tree: 9
Notes: 9
 Mars, 2018

6._ICS_39 GC-01-085-5-02

Location: Tree: 12
Notes: 12
 Mars, 2018

7._ICS_39 GC-01-085-5-02

Location: Tree: 16
Notes: 16
 Mars, 2018

8._ICS_39

Location: 1502 9
 Dapeng Zhang, 2016

9._ICS_39

Location: 1502 12
 Dapeng Zhang, 2016

10._ICS_39

Location: 1502 16
 Dapeng Zhang, 2016

11._ICS_39

Location: 1502 PL14 F
 Dapeng Zhang, 2016

12._ICS_39

Location: 1502 PL15 F
 Dapeng Zhang, 2016

13._ICS_39

Location: 1502 PL5 FP
 Dapeng Zhang, 2016

14._ICS_39

Location: 1502 PL8 FP
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

15._ICS_39 RUQ 1089

 Lambert Motilal, 2023
Population Assignment: 

16._ICS_39 RUQ 1089

Notes: Reading_Collection
 Mars, 2018

17._ICS_39 RUQ 1089

 Dapeng Zhang, 2016

Malaysian Cocoa Board (MCB) Malaysia

18._ICS_39

Location: Row 9 C0200 2A
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

19._ICS_39

Location: 6B E361 T3
 Dapeng Zhang, 2016

USDA-TARS United States of America

20._ICS_39 ICS 39_Fld#_30_Plt#_2

Location: Field: 30, Tree: 2
 Mars, 2018

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1242 113TcSNP1253 114TcSNP1270 115TcSNP1275
116TcSNP1293 117TcSNP1309 118TcSNP1350 119TcSNP1383 120TcSNP1401
121TcSNP1404 122TcSNP1414 123TcSNP1439 124TcSNP1442 125TcSNP1458
126TcSNP1484 127TcSNP1520 128TcSNP1524 129TcSNP1527 130Tcm001s00947643
131Tcm002s20575712 132Tcm003s01336581 133Tcm003s07402719 134Tcm006s26664133