SNP Profiles of PA 70 [PER]   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._PA 70 [PER]___
______GGGGAT___GG______CTCTAACC___
2._PA 70 [PER]___
______GGGGAT___GG______CCTTCCTT___
3._PA 70 [PER]___
______GGCCAT___GG______GGAACCAA___
4._PA 70 [PER]___
______GG___AT___________________________
5._PA 70 [PER]___
______GG___AT___________________________
6._PA 70 [PER]___
__________________________________________
7._PA 70 [PER]___
TTCC_________CC___CCGG____________GT
8._PA 70 [PER]___
______GGCCAT___GG______GGAACCAA___
9._PA 70 [PER]___
______________________________TTCC______
10._PA 70 [PER]___
______GG___AT___________________________
11._PA 70 [PER]___
______GG___AT___________________________
12._PA 70 [PER]___
______GGCCAT___GG______GGAACCAA___
13._PA 70 [PER]___
______GGCCAT___GG______GGAACCAA___
14._PA 70 [PER]___
______GGCCAT___GG______GGAACCAA___
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._PA 70 [PER]___
___AAGTCCAAAG______AA___CGAGGGCT
2._PA 70 [PER]___
___AAGGCCATGG______AA___CCAGGGCC
3._PA 70 [PER]___
___AACCGGATGG______AA___GGAGGGGG
4._PA 70 [PER]___
___AAGGCC____________AA___CCAG___CC
5._PA 70 [PER]___
___AAGTCC____________AA___CGAG___CT
6._PA 70 [PER]___
___AA___CC___GG______AA___GGAG______
7._PA 70 [PER]___
AAAA____________CCGG___GG___AG______
8._PA 70 [PER]___
___AACCGGATGG______AA___GGAGGGGG
9._PA 70 [PER]___
___AAGGCC___GG______AA___CCAG___CC
10._PA 70 [PER]___
___AAGGCC____________AA___CCAG___CC
11._PA 70 [PER]___
___AAGGCC____________AA______AG___CC
12._PA 70 [PER]___
___AACCGGATGG______AA___GGAGGGGG
13._PA 70 [PER]___
___AACCGGATGG______AA___GGAGGGGG
14._PA 70 [PER]___
___AACCAGTTGG______AC___GGAGGGGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._PA 70 [PER]___
______ATAG___AAATCTAG___GGAACGAG
2._PA 70 [PER]___
______AAGG___GGAATTAG___GGAACCAA
3._PA 70 [PER]___
______TTGG___GGAAAAAG___GGAAGG___
4._PA 70 [PER]___
__________________AA_________GG______AA
5._PA 70 [PER]___
__________________AT_________GG______AG
6._PA 70 [PER]___
_______________GGAATT____________CC___
7._PA 70 [PER]___
TTAA___GGAA____________CC____________
8._PA 70 [PER]___
______TTGG___GGAAAAAG___GGAAGG___
9._PA 70 [PER]___
_________GG___GGAA_______________CCAA
10._PA 70 [PER]___
__________________AA_________GG______AA
11._PA 70 [PER]___
__________________AA_________GG______AA
12._PA 70 [PER]___
______TTGG___GGAAAAAG___GGAAGG___
13._PA 70 [PER]___
______TTGG___GGAAAAAG___GGAAGG___
14._PA 70 [PER]___
______TTGG___GGAAAGAA___GGAAGG___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._PA 70 [PER]___
______CC___CCTT___GGTTAACC___ACCT
2._PA 70 [PER]___
______CC___AATT___AGGGAGCG___ACCT
3._PA 70 [PER]___
GG___CC___AA______AGCCAGCG___ACAG
4._PA 70 [PER]___
____________AATT______GG___CG___AC___
5._PA 70 [PER]___
____________CCTT______TT___CC___AC___
6._PA 70 [PER]___
______________________________CG___ACCT
7._PA 70 [PER]___
___AA___CCAA___AA_________CGATACCT
8._PA 70 [PER]___
______CC___AA______AGCCAGCG___ACAG
9._PA 70 [PER]___
____________AATT______GG___CG___ACCT
10._PA 70 [PER]___
____________AATT______GG___CG___AC___
11._PA 70 [PER]___
____________AATT______GG___CG___AC___
12._PA 70 [PER]___
GG___CC___AA______AGCCAGCG___ACAG
13._PA 70 [PER]___
GG___CC___AA______AGCCAGCG___ACAG
14._PA 70 [PER]___
GG___CC___AA______AA___AGGG___CCGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._PA 70 [PER]___
GGTT_________GGAG___AGCTCCGTGG___
2._PA 70 [PER]___
AATT_________AGAA___AACCCCGGGG___
3._PA 70 [PER]___
___AA____________AG___AA______CCGG___
4._PA 70 [PER]___
___TT_________AG_______________GG______
5._PA 70 [PER]___
___TT_________GG_______________GT______
6._PA 70 [PER]___
AA_______________________________________
7._PA 70 [PER]___
______CTAGCCAA___CC______CCGGGGCC
8._PA 70 [PER]___
___AA____________AG___AA______CCGG___
9._PA 70 [PER]___
___TT________________________CCGGGG___
10._PA 70 [PER]___
___TT_________AA_______________GG______
11._PA 70 [PER]___
___TT_________AA_______________GG______
12._PA 70 [PER]___
___AA____________AG___AA______CCGG___
13._PA 70 [PER]___
___AA____________AG___AA______CCGG___
14._PA 70 [PER]___
___AA____________AG___AA______CCAG___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._PA 70 [PER]___
GTGTGT___AC___GGAACGCGCCCCAATT
2._PA 70 [PER]___
TTGGTT___AA___CC___GGCCCCCCGGCT
3._PA 70 [PER]___
AACCAA___AA___GGGGCC___GGGGGGAG
4._PA 70 [PER]___
________________________GG___CC______CT
5._PA 70 [PER]___
________________________CG___CC______TT
6._PA 70 [PER]___
TT__________________GGCCGGCC_________
7._PA 70 [PER]___
_________TTAAAATT___GG_________GG___
8._PA 70 [PER]___
AACCAA___AA___GGGGCC___GGGGGGAG
9._PA 70 [PER]___
______TT___AA_________GGCCCC___GG___
10._PA 70 [PER]___
________________________GG___CC______CT
11._PA 70 [PER]___
________________________GG___CC______CT
12._PA 70 [PER]___
AACCAA___AA___GGGGCC___GGGGGGAG
13._PA 70 [PER]___
AACCAA___AA___GGGGCC___GGGGGGAG
14._PA 70 [PER]___
ACCCAA___AA___CCGGCC___GGGGGGGG
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1._PA 70 [PER]___
GGTT___AATTAGCT______CTCC___TTAA
2._PA 70 [PER]___
CGCC___AACCAGCT______TTCC___CCAG
3._PA 70 [PER]___
CGGG___AAGGAG_________AA______GGAG
4._PA 70 [PER]___
CG______AACCAG__________________CCAG
5._PA 70 [PER]___
GG______AATTAG__________________TTAA
6._PA 70 [PER]___
____________CC_______________CC___CC___
7._PA 70 [PER]___
______CC______AGCTTTAA______CT___AG
8._PA 70 [PER]___
CGGG___AAGGAG_________AA______GGAG
9._PA 70 [PER]___
_______________AGCC_______________CC___
10._PA 70 [PER]___
CG______AACCAG__________________CCAG
11._PA 70 [PER]___
CG______AACCAG__________________CCAG
12._PA 70 [PER]___
CGGG___AAGGAG_________AA______GGAG
13._PA 70 [PER]___
CGGG___AAGGAG_________AA______GGAG
14._PA 70 [PER]___
CCGG___AAGGAG_________AA______GGGG
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1._PA 70 [PER]___
GTAACCAA___AATTTTTTCTGG_________
2._PA 70 [PER]___
GGAACCGG___TTCCTTCTCCGT_________
3._PA 70 [PER]___
CCAAGGGG_________AAAG___AC_________
4._PA 70 [PER]___
___AA____________CC______CC____________
5._PA 70 [PER]___
___AA____________TT______CT____________
6._PA 70 [PER]___
_________GG___TT________________________
7._PA 70 [PER]___
____________TT___CC____________GGAACT
8._PA 70 [PER]___
CCAAGGGG_________AAAG___AC_________
9._PA 70 [PER]___
GG______GG___TT________________________
10._PA 70 [PER]___
___AA____________CC______CC____________
11._PA 70 [PER]___
___AA_____________________CC____________
12._PA 70 [PER]___
CCAAGGGG_________AAAG___AC_________
13._PA 70 [PER]___
CCAAGGGG_________AAAG___AC_________
14._PA 70 [PER]___
CCAAGGGG_________AAAG___AC_________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1._PA 70 [PER]___
CCTTCC______TTAAGG______TTTTCTGG
2._PA 70 [PER]___
CCTTCC______TTACGG______TTCCCTGG
3._PA 70 [PER]___
___AAGG______AGACGG______AAGGAGCC
4._PA 70 [PER]___
___TTCC_________AC_________TT___CTGG
5._PA 70 [PER]___
___TTCC_________AA_________TT___CTGG
6._PA 70 [PER]___
_________________________________CC___CC
7._PA 70 [PER]___
___TT___GGTT_________GGGG_________GG
8._PA 70 [PER]___
___AAGG______AGACGG______AAGGAGCC
9._PA 70 [PER]___
___TT_________CT_______________CCCTGG
10._PA 70 [PER]___
___TTCC_________AC_________TT___CTGG
11._PA 70 [PER]___
___TTCC_________AC_________TT___CTGG
12._PA 70 [PER]___
___AAGG______AGACGG______AAGGAGCC
13._PA 70 [PER]___
___AAGG______AGACGG______AAGGAGCC
14._PA 70 [PER]___
___AAAG______AGCCGG______AAGGAGCG
 127 128 129 130 131 132 133 134 135      
1._PA 70 [PER]___
AATT______CCAAACGGAAX_XX_XX_XX_XX_X
2._PA 70 [PER]___
AGCC______AAAGCCAGACX_XX_XX_XX_XX_X
3._PA 70 [PER]___
AGGG______AA___CCAGACX_XX_XX_XX_XX_X
4._PA 70 [PER]___
AGCC_____________________X_XX_XX_XX_XX_X
5._PA 70 [PER]___
AATT_____________________X_XX_XX_XX_XX_X
6._PA 70 [PER]___
___________________________X_XX_XX_XX_XX_X
7._PA 70 [PER]___
______TTAT_______________X_XX_XX_XX_XX_X
8._PA 70 [PER]___
AGGG______AA___CCAGACX_XX_XX_XX_XX_X
9._PA 70 [PER]___
AG________________________X_XX_XX_XX_XX_X
10._PA 70 [PER]___
AGCC_____________________X_XX_XX_XX_XX_X
11._PA 70 [PER]___
AGCC_____________________X_XX_XX_XX_XX_X
12._PA 70 [PER]___
AGGG______AA___CCAGACX_XX_XX_XX_XX_X
13._PA 70 [PER]___
AGGG______AA___CCAGACX_XX_XX_XX_XX_X
14._PA 70 [PER]___
AGAG______AC___ACAGACX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._PA_70_[PER] GC-04-053-3-17

Location: Tree: 2
Notes: 2 > FP1 (roxo)
 Mars, 2018

2._PA_70_[PER] GC-04-053-3-17

Location: Tree: 6
Notes: 6 > FP2 (verde)
 Mars, 2018

3._PA_70_[PER] GC-04-53-3-17

Location: Field: 4, Block: 3, Rep: 17, Tree: 6 > FP2 (verde)
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

4._PA_70_[PER]

Location: 4317 6 > FP
 Dapeng Zhang, 2016

5._PA_70_[PER]

Location: 4317 2 > FP
 Dapeng Zhang, 2016

Center for Forestry Research and Technology Transfer Vietnam

6._PA_70_[PER]

 Jocelyn De Wever et al., 2019

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

7._PA_70_[PER] RUQ 33

 Lambert Motilal, 2023
Population Assignment: 

8._PA_70_[PER] RUQ 33

Notes: Reading_Collection
 Mars, 2018

9._PA_70_[PER] RUQ 33

 Dapeng Zhang, 2014

10._PA_70_[PER] RUQ 33

 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

11._PA_70_[PER]

Location: MARPER D634
 Dapeng Zhang, 2016

USDA-SHRS United States of America

12._PA_70_[PER] MITC-000025

 Mars, 2018

13._PA_70_[PER] MITC-000026

 Mars, 2018

USDA-TARS United States of America

14._PA_70_[PER] PA 70 [PER]_Fld#_185_Plt#_1

Location: Field: 185, Tree: 1
 Mars, 2018

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1237 113TcSNP1242 114TcSNP1253 115TcSNP1270
116TcSNP1275 117TcSNP1293 118TcSNP1309 119TcSNP1350 120TcSNP1383
121TcSNP1401 122TcSNP1404 123TcSNP1414 124TcSNP1439 125TcSNP1442
126TcSNP1458 127TcSNP1484 128TcSNP1520 129TcSNP1524 130TcSNP1527
131Tcm001s00947643 132Tcm002s20575712 133Tcm003s01336581 134Tcm003s07402719 135Tcm006s26664133