SNP Profiles of PA 175 [PER]   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._PA 175 [PER]___
______GG___AT___GG______CCTTCCTT___
2._PA 175 [PER]___
______GGGGAT___GG______CCTTCCTT___
3._PA 175 [PER]___
______GGGGAT___GG______CCTTCCTT___
4._PA 175 [PER]___
______GGGGAT___GG______CCTTCCTT___
5._PA 175 [PER]___
______GGCCAT___GG______GGAACCAA___
6._PA 175 [PER]___
______GG___AT___________________________
7._PA 175 [PER]___
______GG___AT___________________________
8._PA 175 [PER]___
______GG___AT___________________________
9._PA 175 [PER]___
______GG___AT___________________________
10._PA 175 [PER]___
TTCC_________CT___CCGG____________GG
11._PA 175 [PER]___
______GGCCAT___GG______GGAACCAA___
12._PA 175 [PER]___
______________________________TTCC______
13._PA 175 [PER]___
______GG___AT___________________________
14._PA 175 [PER]___
______GG___AT___________________________
15._PA 175 [PER]___
______GG___AT___________________________
16._PA 175 [PER]___
______GGCCAT___GG______GGAACCAA___
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._PA 175 [PER]___
___CCGGCCAAGG______AA___CCGGGGCC
2._PA 175 [PER]___
___CCGGCCAAGG______AA___CCGGGGCC
3._PA 175 [PER]___
___CCGGCCAAGG______AA___CCGGGGCC
4._PA 175 [PER]___
___CCGGCCAAGG______AA___CCGGGGCC
5._PA 175 [PER]___
___CCCCGGTTGG______AA___GGGGGGGG
6._PA 175 [PER]___
___CCGGCC____________AA___CCGG___CC
7._PA 175 [PER]___
___CCGGCC____________AA___CCGG___CC
8._PA 175 [PER]___
___CCGGCC____________AA___CCGG___CC
9._PA 175 [PER]___
___CCGGCC____________AA___CCGG___CC
10._PA 175 [PER]___
AACC____________CCGG___GG___GG______
11._PA 175 [PER]___
___CCCCGGTTGG______AA___GGGGGGGG
12._PA 175 [PER]___
___CCGGCC___GG______AA___CCGG___CC
13._PA 175 [PER]___
___CCGGCC____________AA___CCGG___CC
14._PA 175 [PER]___
___CCGGCC____________AA___CCGG___CC
15._PA 175 [PER]___
___CCGGCC____________AA___CCGG___CC
16._PA 175 [PER]___
___CCCCGGTTGG______AA___GGGGGGGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._PA 175 [PER]___
______AAGG___GGAACTGG___GGATCCAA
2._PA 175 [PER]___
______AAGG___GGAACTGG___GGATCCAA
3._PA 175 [PER]___
______AAGG___GGAACTGG___GGATCCAA
4._PA 175 [PER]___
______AAGG___GGAACTGG___GGATCCAA
5._PA 175 [PER]___
______TTGG___GGAAAGGG___GGATGG___
6._PA 175 [PER]___
__________________AA_________GG______AA
7._PA 175 [PER]___
__________________AA_________GG______AA
8._PA 175 [PER]___
__________________AA_________GG______AA
9._PA 175 [PER]___
__________________AA_________GG______AA
10._PA 175 [PER]___
CTAA___GGAA____________CT____________
11._PA 175 [PER]___
______TTGG___GGAAAGGG___GGATGG___
12._PA 175 [PER]___
_________GG___GGAA_______________CCAA
13._PA 175 [PER]___
__________________AA_________GG______AA
14._PA 175 [PER]___
__________________AA_________GG______AA
15._PA 175 [PER]___
__________________AA_________GG______AA
16._PA 175 [PER]___
______TTGG___GGAAAGGG___GGATGG___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._PA 175 [PER]___
______CC___ACCT___AGGTGGCG___ACTT
2._PA 175 [PER]___
______CC___ACCT___AGGTGGCG___ACTT
3._PA 175 [PER]___
______CC___ACCT___AGGTGGCG___ACTT
4._PA 175 [PER]___
______CC___ACCT___AGGTGGCG___ACTT
5._PA 175 [PER]___
GG___CC___AC______AGACGGCG___ACAA
6._PA 175 [PER]___
____________ACCT______GT___CG___AC___
7._PA 175 [PER]___
____________ACCT______GT___CG___AC___
8._PA 175 [PER]___
____________ACCT______GT___CG___AC___
9._PA 175 [PER]___
____________ACCT______GT___CG___AC___
10._PA 175 [PER]___
___AC___CCAA___AG_________CGAAACTT
11._PA 175 [PER]___
GG___CC___AC______AGACGGCG___ACAA
12._PA 175 [PER]___
____________ACCT______GT___CG___ACTT
13._PA 175 [PER]___
____________ACCT______GT___CG___AC___
14._PA 175 [PER]___
____________ACCT______GT___CG___AC___
15._PA 175 [PER]___
____________ACCT______GT___CG___AC___
16._PA 175 [PER]___
GG___CC___AC______AGACGGCG___ACAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._PA 175 [PER]___
AATT_________GGAA___AACTCCGGAG___
2._PA 175 [PER]___
AATT_________GGAA___AACTCCGGAG___
3._PA 175 [PER]___
AATT_________GGAA___AACTCCGGAG___
4._PA 175 [PER]___
AATT_________GGAA___AACTCCGGAG___
5._PA 175 [PER]___
___AA____________GG___AA______CCAG___
6._PA 175 [PER]___
___TT_________GG_______________GG______
7._PA 175 [PER]___
___TT_________GG_______________GG______
8._PA 175 [PER]___
___TT_________GG_______________GG______
9._PA 175 [PER]___
___TT_________GG_______________GG______
10._PA 175 [PER]___
______CCAGCCAA___GG______CTGGAGCT
11._PA 175 [PER]___
___AA____________GG___AA______CCAG___
12._PA 175 [PER]___
___TT________________________CTGGAG___
13._PA 175 [PER]___
___TT_________AA_______________GG______
14._PA 175 [PER]___
___TT_________AA________________________
15._PA 175 [PER]___
___TT_________AA_______________GG______
16._PA 175 [PER]___
___AA____________GG___AA______CCAG___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._PA 175 [PER]___
TTGGTT___AA___CG___GGCCCCCCAGCT
2._PA 175 [PER]___
TTGGTT___AA___CG___GGCCCCCCAGCT
3._PA 175 [PER]___
TTGGTT___AA___CG___GGCCCCCCAGCT
4._PA 175 [PER]___
TTGGTT___AA___CG___GGCCCCCCAGCT
5._PA 175 [PER]___
AACCAA___AA___CGGGCC___GGGGAGAG
6._PA 175 [PER]___
________________________GG___CC______CT
7._PA 175 [PER]___
________________________GG___CC______CT
8._PA 175 [PER]___
________________________GG___CC______CT
9._PA 175 [PER]___
________________________GG___CC______CT
10._PA 175 [PER]___
_________TTAAAATT___GG_________AG___
11._PA 175 [PER]___
AACCAA___AA___CGGGCC___GGGGAGAG
12._PA 175 [PER]___
______TT___AA_________GGCCCC_________
13._PA 175 [PER]___
________________________GG___CC______CT
14._PA 175 [PER]___
__________________TT___GGCCCC______CT
15._PA 175 [PER]___
________________________GG___CC______CT
16._PA 175 [PER]___
AACCAA___AA___CGGGCC___GGGGAGAG
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1._PA 175 [PER]___
CGCC___AATTAACT______TTCC___CCAG
2._PA 175 [PER]___
CGCC___AATTAACT______TTCC___CCAG
3._PA 175 [PER]___
CGCC___AATTAACT______TTCC___CCAG
4._PA 175 [PER]___
CGCC___AATTAACT______TTCC___CCAG
5._PA 175 [PER]___
CGGG___AAAAAA_________AA______GGAG
6._PA 175 [PER]___
CG______AATTAA__________________CCAG
7._PA 175 [PER]___
CG______AATTAA__________________CCAG
8._PA 175 [PER]___
CG______AATTAA__________________CCAG
9._PA 175 [PER]___
CG______AATTAA__________________CCAG
10._PA 175 [PER]___
______CC______AACTTTAA______CC___AG
11._PA 175 [PER]___
CGGG___AAAAAA_________AA______GGAG
12._PA 175 [PER]___
_______________AACC_______________CC___
13._PA 175 [PER]___
CG______AATTAA__________________CCAG
14._PA 175 [PER]___
CG______AATTAA__________________CCAG
15._PA 175 [PER]___
CG______AATTAA__________________CCAG
16._PA 175 [PER]___
CGGG___AAAAAA_________AA______GGAG
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1._PA 175 [PER]___
GGAACCGG___TTCCTTTTCCGT_________
2._PA 175 [PER]___
GGAACCGG___TTCCTTTTCCGT_________
3._PA 175 [PER]___
GGAACCGG___TTCCTTTTCCGT_________
4._PA 175 [PER]___
GGAACCGG___TTCCTTTTCCGT_________
5._PA 175 [PER]___
CCAAGGGG_________AAAA___AC_________
6._PA 175 [PER]___
___AA____________CC______CC____________
7._PA 175 [PER]___
___AA____________CC______CC____________
8._PA 175 [PER]___
___AA____________CC______CC____________
9._PA 175 [PER]___
___AA____________CC______CC____________
10._PA 175 [PER]___
____________CT___CC____________GGAACC
11._PA 175 [PER]___
CCAAGGGG_________AAAA___AC_________
12._PA 175 [PER]___
GG______GG___TT________________________
13._PA 175 [PER]___
___AA____________CC______CC____________
14._PA 175 [PER]___
___AA____________CC______CC____________
15._PA 175 [PER]___
___AA____________CC______CC____________
16._PA 175 [PER]___
CCAAGGGG_________AAAA___AC_________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1._PA 175 [PER]___
CCTTCC______TTACGG______TTCTCTCG
2._PA 175 [PER]___
CCTTCC______TTACGG______TTCTCTCG
3._PA 175 [PER]___
CCTTCC______TTACGG______TTCTCTCG
4._PA 175 [PER]___
CCTTCC______TTACGG______TTCTCTCG
5._PA 175 [PER]___
___AAGG______AGACGG______AAAGAGCG
6._PA 175 [PER]___
___TTCC_________AC_________TT___CTCG
7._PA 175 [PER]___
___TTCC_________AC_________TT___CTCG
8._PA 175 [PER]___
___TTCC_________AC_________TT___CTCG
9._PA 175 [PER]___
___TTCC_________AC_________TT___CTCG
10._PA 175 [PER]___
___TT___GGTT_________GGGG_________CG
11._PA 175 [PER]___
___AAGG______AGACGG______AAAGAGCG
12._PA 175 [PER]___
___TT_________CT_______________CTCTCG
13._PA 175 [PER]___
___TTCC_________AC_________TT___CTCG
14._PA 175 [PER]___
___TTCC_________AC_________TT___CTCG
15._PA 175 [PER]___
___TTCC_________AC_________TT___CTCG
16._PA 175 [PER]___
___AAGG______AGACGG______AAAGAGCG
 127 128 129 130 131 132 133 134 135      
1._PA 175 [PER]___
GGCC______ACAGCCAGACX_XX_XX_XX_XX_X
2._PA 175 [PER]___
GGCC______ACAGCCAGACX_XX_XX_XX_XX_X
3._PA 175 [PER]___
GGCC______ACAGCCAGACX_XX_XX_XX_XX_X
4._PA 175 [PER]___
GGCC______ACAGCCAGACX_XX_XX_XX_XX_X
5._PA 175 [PER]___
GGGG______AC___CCAGACX_XX_XX_XX_XX_X
6._PA 175 [PER]___
GGCC_____________________X_XX_XX_XX_XX_X
7._PA 175 [PER]___
GGCC_____________________X_XX_XX_XX_XX_X
8._PA 175 [PER]___
GGCC_____________________X_XX_XX_XX_XX_X
9._PA 175 [PER]___
GGCC_____________________X_XX_XX_XX_XX_X
10._PA 175 [PER]___
______CTTT_______________X_XX_XX_XX_XX_X
11._PA 175 [PER]___
GGGG______AC___CCAGACX_XX_XX_XX_XX_X
12._PA 175 [PER]___
GG________________________X_XX_XX_XX_XX_X
13._PA 175 [PER]___
GGCC_____________________X_XX_XX_XX_XX_X
14._PA 175 [PER]___
GGCC_____________________X_XX_XX_XX_XX_X
15._PA 175 [PER]___
GGCC_____________________X_XX_XX_XX_XX_X
16._PA 175 [PER]___
GGGG______AC___CCAGACX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._PA_175_[PER] NA

Location: Tree: 5
Notes: 5
 Mars, 2018

2._PA_175_[PER] NA

Location: Tree: 8
Notes: 8
 Mars, 2018

3._PA_175_[PER] NA

Location: Tree: 9
Notes: 9
 Mars, 2018

4._PA_175_[PER] NA

Location: Tree: 12
Notes: 12
 Mars, 2018

5._PA_175_[PER] -

Location: Field: 8, Block: 1, Rep: 27, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

6._PA_175_[PER]

Location: 8127 5
 Dapeng Zhang, 2016

7._PA_175_[PER]

Location: 8127 8
 Dapeng Zhang, 2016

8._PA_175_[PER]

Location: 8127 9
 Dapeng Zhang, 2016

9._PA_175_[PER]

Location: 8127 12
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

10._PA_175_[PER] RUQ 37

 Lambert Motilal, 2023
Population Assignment: 

11._PA_175_[PER] RUQ 37

Notes: Reading_Collection
 Mars, 2018

12._PA_175_[PER] RUQ 37

 Dapeng Zhang, 2014

13._PA_175_[PER] RUQ 37

 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

14._PA_175_[PER]

Location: 5B F473 T6
 Dapeng Zhang, 2014

15._PA_175_[PER]

Location: Marper D 738
 Dapeng Zhang, 2016

USDA-SHRS United States of America

16._PA_175_[PER] MITC-000016

 Mars, 2018

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1237 113TcSNP1242 114TcSNP1253 115TcSNP1270
116TcSNP1275 117TcSNP1293 118TcSNP1309 119TcSNP1350 120TcSNP1383
121TcSNP1401 122TcSNP1404 123TcSNP1414 124TcSNP1439 125TcSNP1442
126TcSNP1458 127TcSNP1484 128TcSNP1520 129TcSNP1524 130TcSNP1527
131Tcm001s00947643 132Tcm002s20575712 133Tcm003s01336581 134Tcm003s07402719 135Tcm006s26664133