SNP Profiles of IMC 11   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._IMC 11___
______GGGGTT___GG______CCTTCCTT___
2._IMC 11___
______GGGGTT___GG______CCTTCCTT___
3._IMC 11___
______GGGGTT___GG______CCTTCCTT___
4._IMC 11___
______GGGGTT___GG______CCTTCCTT___
5._IMC 11___
______GGGGTT___GG______CCTTCCTT___
6._IMC 11___
______GGCCTT___GG______GGAACCAA___
7._IMC 11___
______GG___TT___________________________
8._IMC 11___
______GG___TT___________________________
9._IMC 11___
______GG___TT___________________________
10._IMC 11___
______GG___TT___________________________
11._IMC 11___
______GG___TT___________________________
12._IMC 11___
CTCC_________TT___CCGG____________TT
13._IMC 11___
______GGCCTT___GG______GGAACCAA___
14._IMC 11___
______________________________TTCC______
15._IMC 11___
______GG___TT___________________________
16._IMC 11___
______GG___TT___________________________
17._IMC 11___
______GGCCTT___GG______GGAACCAA___
18._IMC 11___
______GGCCTT___GG______GGAACCAA___
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._IMC 11___
___ACGTCTATGG______AA___CGAGGGTT
2._IMC 11___
___ACGTCTATGG______AA___CGAGGGTT
3._IMC 11___
___ACGTCTATGG______AA___CGAGGGTT
4._IMC 11___
___ACGTCTATGG______AA___CGAGGGTT
5._IMC 11___
___ACGTCTATGG______AA___CGAGGGTT
6._IMC 11___
___ACACAGATGG______AC___CGAGGGAA
7._IMC 11___
___ACGTCT____________AA___CGAG___TT
8._IMC 11___
___ACGTCT____________AA___CGAG___TT
9._IMC 11___
___ACGTCT____________AA___CGAG___TT
10._IMC 11___
___ACGTCT____________AA___CGAG___TT
11._IMC 11___
___ACGTCT____________AA___CGAG___TT
12._IMC 11___
AAAC____________CCAG___GG___AG______
13._IMC 11___
___ACACAGATGG______AC___CGAGGGAA
14._IMC 11___
___ACGTCT___GG______AC___CGAG___TT
15._IMC 11___
___ACGTCT____________AC___CGAG___TT
16._IMC 11___
___ACGTCT____________AC___CGAG___TT
17._IMC 11___
___ACACAGATGG______AC___CGAGGGAA
18._IMC 11___
___ACACAGATGG______AC___CGAGGGAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._IMC 11___
______AAAG___GGAACCAG___GGATCCAA
2._IMC 11___
______AAAG___GGAACCAG___GGATCCAA
3._IMC 11___
______AAAG___GGAACCAG___GGATCCAA
4._IMC 11___
______AAAG___GGAACCAG___GGATCCAA
5._IMC 11___
______AAAG___GGAACCAG___GGATCCAA
6._IMC 11___
______TTAG___GGAAGGAG___GGATGG___
7._IMC 11___
__________________AA_________GG______AA
8._IMC 11___
__________________AA_________GG______AA
9._IMC 11___
__________________AA_________GG______AA
10._IMC 11___
__________________AA_________GG______AA
11._IMC 11___
__________________AA_________GG______AA
12._IMC 11___
TTAC___AGAC____________CC____________
13._IMC 11___
______TTAG___GGAAGGAG___GGATGG___
14._IMC 11___
_________AG___GGAA_______________CCAA
15._IMC 11___
__________________AA_________AG______AA
16._IMC 11___
__________________AA_________GG______AA
17._IMC 11___
______TTAG___GGAAGGAG___GGATGG___
18._IMC 11___
______TTAG___GGAAGGAG___GGATGG___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._IMC 11___
______AA___CCCT___AGGGGGGG___AACC
2._IMC 11___
______AA______CT___AGGGGGGG___AACC
3._IMC 11___
______AA___CCCT___AGGGGGGG___AACC
4._IMC 11___
______AA___CCCT___AGGGGGGG___AACC
5._IMC 11___
______AA___CCCT___AGGGGGGG___AACC
6._IMC 11___
AG___AA___CC______AGCCGGGG___AAGG
7._IMC 11___
____________CCCT______GG___GG___AA___
8._IMC 11___
____________CCCT______GG___GG___AA___
9._IMC 11___
____________CCCT______GG___GG___AA___
10._IMC 11___
_______________CT______GG___GG___AA___
11._IMC 11___
____________CCCT______GG___GG___AA___
12._IMC 11___
___AA___CC______AA_________GGATAACC
13._IMC 11___
AG___AA___CC______AGCCGGGG___AAGG
14._IMC 11___
____________CCCT______GG___GG___AACC
15._IMC 11___
____________CCCT______GG___GG___AA___
16._IMC 11___
____________CCCT______GG___GG___AA___
17._IMC 11___
AG___AA___CC______AGCCGGGG___AAGG
18._IMC 11___
AG___AA___CC______AGCCGGGG___AAGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._IMC 11___
AGCC_________AAAA___AATTCCGGGG___
2._IMC 11___
AGCC_________AAAA___AATTCCGGGG___
3._IMC 11___
AGCC_________AAAA___AATTCCGGGG___
4._IMC 11___
AGCC_________AAAA___AATTCCGGGG___
5._IMC 11___
AGCC_________AAAA___AATTCCGGGG___
6._IMC 11___
___GG____________AA___AA______CCGG___
7._IMC 11___
___CC_________AA_______________GG______
8._IMC 11___
___CC_________AA_______________GG______
9._IMC 11___
___CC_________AA_______________GG______
10._IMC 11___
___CC_________AA_______________GG______
11._IMC 11___
___CC_________AA_______________GG______
12._IMC 11___
______CTAGCCAA___CG______TTGGGGCT
13._IMC 11___
___GG____________AA___AA______CCGG___
14._IMC 11___
___CC________________________TTGGGG___
15._IMC 11___
___CC_________AA_______________GG______
16._IMC 11___
___CC_________AA_______________GG______
17._IMC 11___
___GG____________AA___AA______CCGG___
18._IMC 11___
___GG____________AA___AA______CCGG___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._IMC 11___
TTTTTT___AC___CG___CCCCCCCCGGCC
2._IMC 11___
TTTTTT___AC___CG___CCCCCCCCGGCC
3._IMC 11___
TTTTTT___AC___CG___CCCCCCCCGGCC
4._IMC 11___
TTTTTT___AC___CG___CCCCCCCCGGCC
5._IMC 11___
TTTTTT___AC___CG___CCCCCCCCGGCC
6._IMC 11___
AAAAAA___AC___CGGGGG___GGGGGGGG
7._IMC 11___
________________________CC___CC______CC
8._IMC 11___
________________________CC___CC______CC
9._IMC 11___
________________________CC___CC______CC
10._IMC 11___
________________________CC___CC______CC
11._IMC 11___
________________________CC___CC______CC
12._IMC 11___
_________TTACAATT___CC_________GG___
13._IMC 11___
AAAAAA___AC___CGGGGG___GGGGGGGG
14._IMC 11___
______TT___AC_________CCCCCC_________
15._IMC 11___
________________________CC___CC______CC
16._IMC 11___
________________________CC___CC______CC
17._IMC 11___
AAAAAA___AC___CGGGGG___GGGGGGGG
18._IMC 11___
AAAAAA___AC___CGGGGG___GGGGGGGG
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1._IMC 11___
GGCC___AATTAACC______TTCC___CTGG
2._IMC 11___
GGCC___AATTAACC______TTCC___CTGG
3._IMC 11___
GGCC___AATTAACC______TTCC___CTGG
4._IMC 11___
GGCC___AATTAACC______TTCC___CTGG
5._IMC 11___
GGCC___AATTAACC______TTCC___CTGG
6._IMC 11___
GGGG___AAAAAA_________AA______AGGG
7._IMC 11___
GG______AATTAA__________________CTGG
8._IMC 11___
GG______AATTAA__________________CTGG
9._IMC 11___
GG______AATTAA__________________CTGG
10._IMC 11___
GG______AATTAA__________________CTGG
11._IMC 11___
GG______AATTAA__________________CTGG
12._IMC 11___
______CG______AACCCCAA______CC___GG
13._IMC 11___
GGGG___AAAAAA_________AA______AGGG
14._IMC 11___
_______________AACC_______________CT___
15._IMC 11___
GG______AATTAA__________________CTGG
16._IMC 11___
GG______AATTAA__________________CTGG
17._IMC 11___
GGGG___AAAAAA_________AA______AGGG
18._IMC 11___
GGGG___AAAAAA_________AA______AGGG
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1._IMC 11___
GGAACCGG___TTCCTTCTCCGG_________
2._IMC 11___
GGAACCGG___TTCCTTCTCCGG_________
3._IMC 11___
GGAACCGG___TTCCTTCTCCGG_________
4._IMC 11___
GGAACCGG___TTCCTTCTCCGG_________
5._IMC 11___
GGAACCGG___TTCCTTCTCCGG_________
6._IMC 11___
CCAAGGGG_________AAAG___CC_________
7._IMC 11___
___AA____________CC______CC____________
8._IMC 11___
___AA____________CC______CC____________
9._IMC 11___
___AA____________CC______CC____________
10._IMC 11___
___AA____________CC______CC____________
11._IMC 11___
___AA____________CC______CC____________
12._IMC 11___
____________CT___CC____________GGAACT
13._IMC 11___
CCAAGGGG_________AAAG___CC_________
14._IMC 11___
GG______GG___TT________________________
15._IMC 11___
___AA____________CC______CC____________
16._IMC 11___
___AA____________CC______CC____________
17._IMC 11___
CCAAGGGG_________AAAG___CC_________
18._IMC 11___
CCAAGGGG_________AAAG___CC_________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1._IMC 11___
CCGTTT______TTCCGG______TTCCTTCG
2._IMC 11___
CCGTTT______TTCCGG______TTCCTTCG
3._IMC 11___
CCGTTT______TTCCGG______TTCCTTCG
4._IMC 11___
CCGTTT______TTCCGG______TTCCTTCG
5._IMC 11___
CCGTTT______TTCCGG______TTCCTTCG
6._IMC 11___
___AAAA______AACCGG______AAGGAACG
7._IMC 11___
___GTTT_________CC_________TT___TTCG
8._IMC 11___
___GTTT_________CC_________TT___TTCG
9._IMC 11___
___GTTT_________CC_________TT___TTCG
10._IMC 11___
___GTTT_________CC_________TT___TTCG
11._IMC 11___
___GTTT_________CC_________TT___TTCG
12._IMC 11___
___GT___GGAT_________AGGG_________CG
13._IMC 11___
___AAAA______AACCGG______AAGGAACG
14._IMC 11___
___GT_________TT_______________CCTTCG
15._IMC 11___
___GTTT_________CC_________TT___TTCG
16._IMC 11___
___GTTT_________CC_________TT___TTCG
17._IMC 11___
___AAAA______AACCGG______AAGGAACG
18._IMC 11___
___AAAA______AACCGG______AAGGAACG
 127 128 129 130 131 132 133 134 135      
1._IMC 11___
AGCC______ACAGAAAAACX_XX_XX_XX_XX_X
2._IMC 11___
AGCC______ACAGAAAAACX_XX_XX_XX_XX_X
3._IMC 11___
AGCC______ACAGAAAAACX_XX_XX_XX_XX_X
4._IMC 11___
AGCC______ACAGAAAAACX_XX_XX_XX_XX_X
5._IMC 11___
AGCC______ACAGAAAAACX_XX_XX_XX_XX_X
6._IMC 11___
AGGG______AC___AAAAACX_XX_XX_XX_XX_X
7._IMC 11___
AGCC_____________________X_XX_XX_XX_XX_X
8._IMC 11___
AGCC_____________________X_XX_XX_XX_XX_X
9._IMC 11___
AGCC_____________________X_XX_XX_XX_XX_X
10._IMC 11___
AGCC_____________________X_XX_XX_XX_XX_X
11._IMC 11___
AGCC_____________________X_XX_XX_XX_XX_X
12._IMC 11___
______TTAT_______________X_XX_XX_XX_XX_X
13._IMC 11___
AGGG______AC___AAAAACX_XX_XX_XX_XX_X
14._IMC 11___
AG________________________X_XX_XX_XX_XX_X
15._IMC 11___
AGCC_____________________X_XX_XX_XX_XX_X
16._IMC 11___
AGCC_____________________X_XX_XX_XX_XX_X
17._IMC 11___
AGGG______AC___AAAAACX_XX_XX_XX_XX_X
18._IMC 11___
AGGG______AC___AAAAACX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._IMC_11 GC-04-029-2-11

Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._IMC_11 GC-04-029-2-11

Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

3._IMC_11 GC-04-029-2-11

Location: Tree: 5
Notes: 5
 Mars, 2018

4._IMC_11 GC-04-029-2-11

Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018

5._IMC_11 GC-04-029-2-11

Location: Tree: 8
Notes: 8
 Mars, 2018

6._IMC_11 GC-04-29-2-11

Location: Field: 4, Block: 2, Rep: 11, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

7._IMC_11

Location: 4211 5
 Dapeng Zhang, 2016

8._IMC_11

Location: 4211 8
 Dapeng Zhang, 2016

9._IMC_11

Location: 4211 1 > FP
 Dapeng Zhang, 2016

10._IMC_11

Location: 4211 2 > FP
 Dapeng Zhang, 2016

11._IMC_11

Location: 4211 6 > FP
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

12._IMC_11 RUQ 8

 Lambert Motilal, 2023
Population Assignment: 

13._IMC_11 RUQ 8

Notes: Reading_Collection
 Mars, 2018

14._IMC_11 RUQ 8

 Dapeng Zhang, 2014

15._IMC_11 RUQ 8

 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

16._IMC_11

Location: 6B F423 T1
 Dapeng Zhang, 2016

USDA-SHRS United States of America

17._IMC_11 MITC-000647

 Mars, 2018

USDA-TARS United States of America

18._IMC_11 IMC 11_Fld#_165_Plt#_2

Location: Field: 165, Tree: 2
 Mars, 2018

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1237 113TcSNP1242 114TcSNP1253 115TcSNP1270
116TcSNP1275 117TcSNP1293 118TcSNP1309 119TcSNP1350 120TcSNP1383
121TcSNP1401 122TcSNP1404 123TcSNP1414 124TcSNP1439 125TcSNP1442
126TcSNP1458 127TcSNP1484 128TcSNP1520 129TcSNP1524 130TcSNP1527
131Tcm001s00947643 132Tcm002s20575712 133Tcm003s01336581 134Tcm003s07402719 135Tcm006s26664133