SNP Profiles of UF 29   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._UF 29___
CGGGATAGCCTTCCTTCCGTCTATGGAC
2._UF 29___
CGGGATAGCCTTCCTTCCGTCTATGGAC
3._UF 29___
CGGGATAGCCTTCCTTCCGTCTATGGAC
4._UF 29___
CGGGATAGCCTTCCTTCCGTCTATGGAC
5._UF 29___
CGGGATAGCCTTCCTTCCGTCTATGGAC
6._UF 29___
CGGGATAGCCTTCCTTCCGTCTATGGAC
7._UF 29___
CGGGATAGCCTTCCTTCCGTCTATGGAC
8._UF 29___
CGGGATAGCCTTCCTTCCGTCTATGGAC
9._UF 29___
CGGGATAGCCTTCCTTCCGTCTATGGAC
10._UF 29___
CGGGATAGCCTTCCTTCCGTCTATGGAC
11._UF 29___
CGGGATAGCCTTCCTTCCGTCTATGGAC
12._UF 29___
CGGGATAGCCTTCCTTCCGTCTATGGAC
13._UF 29___
CGGGATAGCCTTCCTTCCGTCTATGGAC
14._UF 29___
CG___AT_______________CCGTCT______AC
15._UF 29___
CG___AT_______________CCGTCT______AC
16._UF 29___
CG___AT_______________CCGTCT______AC
17._UF 29___
CG___AT_______________CCGTCT______AC
18._UF 29___
CG___AT_______________CCGTCT______AC
19._UF 29___
CG___AT_______________CCGTCT______AC
20._UF 29___
CG___AT_______________CCGTCT______AC
21._UF 29___
CG___AT_______________CCGTCT______AC
22._UF 29___
CG___AT_______________CCGTCT______AC
23._UF 29___
CG___AT_______________CCGTCT______AC
24._UF 29___
CG___AT_______________CCGTCT______AC
25._UF 29___
CG___AT_______________CCGTCT______AC
26._UF 29___
CG___AT_______________CCGTCT______AC
27._UF 29___
CG___AT_______________CCGTCT______AC
28._UF 29___
CG___AT_______________CCGTCT______AC
29._UF 29___
CG___AT_______________CCGTCT______AC
30._UF 29___
CGCCATAGGGAACCAACCACAGATGGAC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._UF 29___
CCAAGGCCATGGAGATCTAGAGATCCAG
2._UF 29___
CCAAGGCCATGGAGATCTAGAGATCCAG
3._UF 29___
CCAAGGCCATGGAGATCTAGAGATCCAG
4._UF 29___
CCAAGGCCATGGAGATCTAGAGATCCAG
5._UF 29___
CCAAGGCCATGGAGAT___AGAGATCCAG
6._UF 29___
CCAAGGCCATGGAGATCTAGAGATCCAG
7._UF 29___
CCAAGGCCATGGAGATCTAG___ATCCAG
8._UF 29___
CCAAGGCCATGGAGATCTAGAGATCCAG
9._UF 29___
CCAAGGCCATGGAGATCTAG___ATCCAG
10._UF 29___
CCAAGGCCATGGAGATCTAGAGATCCAG
11._UF 29___
CCAAGGCCATGGAGATCTAGAGATCCAG
12._UF 29___
CCAAGGCCATGGAGATCTAGAGATCCAG
13._UF 29___
CCAAGGCCATGGAGATCTAGAGATCCAG
14._UF 29___
CCAA___CC_________AT______AG______AG
15._UF 29___
CCAA___CC_________AT______AG______AG
16._UF 29___
CCAA___CC_________AT______AG______AG
17._UF 29___
CCAA___CC_________AT______AG______AG
18._UF 29___
CCAA___CC_________AT______AG______AG
19._UF 29___
CCAA___CC_________AT_______________AG
20._UF 29___
CCAA___CC_________AT______AG______AG
21._UF 29___
CCAA___CC_________AT______AG______AG
22._UF 29___
CCAA___CC_________AT______AG______AG
23._UF 29___
CCAA___CC_________AT______AG______AG
24._UF 29___
CCAA___CC_________AT______AG______AG
25._UF 29___
CCAA___CC_________AT______AG______AG
26._UF 29___
CCAA___CC_________AT_______________AG
27._UF 29___
CCAA___CC_________AT______AG______AG
28._UF 29___
___AA___CC_________AT______AG_________
29._UF 29___
___AA___CC_________AT______AA______AG
30._UF 29___
GGAAGGGGATGGAGATAGAGAGATGG___
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._UF 29___
___ACACCTAGGTAGCGACCCAACTAGAA
2._UF 29___
___ACACCTAGGTAGCGACCCAACTAGAA
3._UF 29___
___ACACCTAGGTAGCGACCCAACTAGAA
4._UF 29___
___ACACCTAGGTAGCGACCCAACTAGAA
5._UF 29___
___ACACCTAGGTAGCGACCCAACTAGAA
6._UF 29___
___ACACCTAGGTAGCGACCCAACTAGAA
7._UF 29___
___ACACCTAGGTAGCGACCCAACTAGAA
8._UF 29___
___ACACCTAGGTAGCGACCCAACTAGAA
9._UF 29___
___ACACCTAGGTAGCGACCCAACTAGAA
10._UF 29___
___ACACCTAGGTAGCGACCCAACTAGAA
11._UF 29___
___ACACCTAGGTAGCGACCCAACTAGAA
12._UF 29___
___ACACCTAGGTAGCGACCCAACTAGAA
13._UF 29___
___ACACCTAGGTAGCGACCCAACTAGAA
14._UF 29___
______ACCT___GT___CGAC______CTAG___
15._UF 29___
______ACCT___GT___CGAC______CTAG___
16._UF 29___
______ACCT___GT___CGAC______CTAG___
17._UF 29___
______ACCT___GT___CGAC______CTAG___
18._UF 29___
______ACCT___GT___CGAC______CTAG___
19._UF 29___
______ACCT___GT___CGAC______CTAG___
20._UF 29___
______ACCT___GT___CGAC______CTAG___
21._UF 29___
______ACCT___GT___CGAC______CTAG___
22._UF 29___
______ACCT___GT___CGAC______CTAG___
23._UF 29___
______ACCT___GT___CGAC______CTAG___
24._UF 29___
______ACCT___GT___CGAC______CTAG___
25._UF 29___
______ACCT___GT___CGAC______CTAG___
26._UF 29___
______ACCT___GT___CGAC______CTAG___
27._UF 29___
______ACCT___GT___CGAC______CTAA___
28._UF 29___
______ACCT_________CGAC______CTAA___
29._UF 29___
______ACCT___GT___CGAC______CTAA___
30._UF 29___
AGACAC___AGACAGCGACGG___AG___AG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._UF 29___
AATTCTGGAGTTTTTTACCGAAGGCGCT
2._UF 29___
AATTCTGGAGTTTTTTACCGAAGGCGCT
3._UF 29___
AATTCTGGAGTTTTTTACCGAAGGCGCT
4._UF 29___
AATTCTGGAGTTTTTTACCGAAGGCGCT
5._UF 29___
AATTCTGGAGTTTTTTACCGAAGGCGCT
6._UF 29___
AATTCTGGAGTTTTTTACCGAAGGCGCT
7._UF 29___
AATTCTGGAGTTTTTTACCGAAGGCGCT
8._UF 29___
AATTCTGGAGTTTTTTACCGAAGGCGCT
9._UF 29___
AATTCTGGAGTTTTTTACCGAAGGCGCT
10._UF 29___
AATTCTGGAGTTTTTTACCGAAGGCGCT
11._UF 29___
AATTCTGGAGTTTTTTACCGAAGGCGCT
12._UF 29___
AATTCTGGAGTTTTTTACCGAAGGCGCT
13._UF 29___
AATTCTGGAGTTTTTTACCGAAGGCGCT
14._UF 29___
_________GG_____________________GG___CT
15._UF 29___
_________GG_____________________GG___CT
16._UF 29___
_________GG_____________________GG___CT
17._UF 29___
_________GG_____________________GG___CT
18._UF 29___
_________GG_____________________GG___CT
19._UF 29___
_________GG_____________________GG___CT
20._UF 29___
_________GG_____________________GG___CT
21._UF 29___
_________GG_____________________GG___CT
22._UF 29___
_________GG_____________________GG___CT
23._UF 29___
_________GG_____________________GG___CT
24._UF 29___
_________GG_____________________GG___CT
25._UF 29___
_________GG_____________________GG___CT
26._UF 29___
_________GG_____________________GG___CT
27._UF 29___
_________GG_____________________GG___CT
28._UF 29___
_________GG_____________________GG___CT
29._UF 29___
_________GG_____________________GG___CT
30._UF 29___
AA______CCAGAAAAAAACCGAGCC___AG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._UF 29___
CGAGCTGGCCATTTAGCTTTCCCCAGGG
2._UF 29___
CGAGCTGGCCATTTAGCTTTCCCCAGGG
3._UF 29___
CGAGCTGGCCATTTAGCTTTCCCCAGGG
4._UF 29___
CGAGCTGGCCATTTAGCTTTCCCCAGGG
5._UF 29___
CGAGCTGGCCATTTAGCTTTCCCCAGGG
6._UF 29___
CGAGCTGGCCATTTAGCTTTCCCCAGGG
7._UF 29___
CGAGCTGGCCATTTAGCTTTCCCCAGGG
8._UF 29___
CGAGCTGGCCATTTAGCTTTCCCCAGGG
9._UF 29___
CGAGCTGGCCATTTAGCTTTCCCCAGGG
10._UF 29___
CGAGCTGGCCATTTAGCTTTCCCCAGGG
11._UF 29___
CGAGCTGGCCATTTAGCTTTCCCCAGGG
12._UF 29___
CGAGCTGGCCATTTAGCTTTCCCCAGGG
13._UF 29___
CGAGCTGGCCATTTAGCTTTCCCCAGGG
14._UF 29___
______CTGG___ATTTAG_________CCAG___
15._UF 29___
______CTGG___ATTTAG_________CCAG___
16._UF 29___
______CTGG___ATTTAG_________CCAG___
17._UF 29___
______CTGG___ATTTAG_________CCAG___
18._UF 29___
______CTGG___ATTTAG_________CCAG___
19._UF 29___
______CTGG___ATTTAG_________CCAG___
20._UF 29___
______CTGG___ATTTAG_________CCAG___
21._UF 29___
______CTGG___ATTTAG_________CCAG___
22._UF 29___
______CTGG___ATTTAG_________CCAG___
23._UF 29___
______CTGG___ATTTAG_________CCAG___
24._UF 29___
______CTGG___ATTTAG_________CCAG___
25._UF 29___
______CTGG___ATTTAG_________CCAG___
26._UF 29___
______CTGG___ATTTAG_________CCAG___
27._UF 29___
______CTGG___ATTTAG_________CCAG___
28._UF 29___
______CTGG______TT_______________AG___
29._UF 29___
______CTGG___ATTTAG_________CCAG___
30._UF 29___
CGAGAGGGGGATAAAG___AA___GGAGCC
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._UF 29___
ATCTAGTTCTCTTTCCGTACGT___TTAA
2._UF 29___
ATCTAGTTCTCTTTCCGTACGTCTTTAA
3._UF 29___
ATCTAGTTCTCTTTCCGTACGTCTTTAA
4._UF 29___
ATCTAGTTCTCTTTCCGTACGTCTTTAA
5._UF 29___
ATCTAGTTCTCTTTCCGTACGTCTTTAA
6._UF 29___
ATCTAGTTCTCTTTCCGTACGTCTTTAA
7._UF 29___
ATCTAGTTCTCTTTCCGTACGTCTTTAA
8._UF 29___
ATCTAGTTCTCTTTCCGTACGTCTTTAA
9._UF 29___
ATCTAGTTCTCTTTCCGTACGTCTTTAA
10._UF 29___
ATCTAGTTCTCTTTCCGTACGTCTTTAA
11._UF 29___
ATCTAGTTCTCTTTCCGTACGTCTTTAA
12._UF 29___
ATCTAGTTCTCTTTCCGTACGTCTTTAA
13._UF 29___
ATCTAGTTCTCTTTCCGT___GTCTTTAA
14._UF 29___
AT_________CT______CC______GT______AA
15._UF 29___
AT_________CT______CC______GTCT___AA
16._UF 29___
AT_________CT______CC______GTCT___AA
17._UF 29___
AT_________CT______CC______GTCT___AA
18._UF 29___
AT_________CT______CC______GTCT___AA
19._UF 29___
AT_________CT______CC______GTCT___AA
20._UF 29___
AT_________CT______CC______GTCT___AA
21._UF 29___
AT_________CT______CC______GTCT___AA
22._UF 29___
AT_________CT______CC______GTCT___AA
23._UF 29___
AT_________CT______CC______GTCT___AA
24._UF 29___
AT_________CT______CC______GTCT___AA
25._UF 29___
AT_________CT______CC______GTCT___AA
26._UF 29___
AT_________CT______CC______GTCT___AA
27._UF 29___
AT_________CT______CC______GTCT___AC
28._UF 29___
AT__________________CC______GTCT___AC
29._UF 29___
AT_________CT______CC______GTCT___AC
30._UF 29___
ATAGAG______AGAA___AC___ACAGAA___
 85 86 87 88 89 90 91 92 93 94 95 96   
1._UF 29___
GGCTCTCTCGAGCTACAAACAGACX_XX_X
2._UF 29___
GGCTCTCTCGAGCTACAAACAGACX_XX_X
3._UF 29___
GGCTCTCTCGAGCTACAAACAGACX_XX_X
4._UF 29___
GGCTCTCTCGAGCTACAAACAGACX_XX_X
5._UF 29___
GGCTCTCTCGAGCTACAAACAGACX_XX_X
6._UF 29___
GGCTCTCTCGAGCTACAAACAGACX_XX_X
7._UF 29___
GGCTCTCTCGAGCTACAAACAGACX_XX_X
8._UF 29___
GGCTCTCTCGAGCTACAAACAGACX_XX_X
9._UF 29___
GGCTCTCTCGAGCTACAAACAGACX_XX_X
10._UF 29___
GGCTCTCTCGAGCTACAAACAGACX_XX_X
11._UF 29___
GGCTCTCTCGAGCTACAAACAGACX_XX_X
12._UF 29___
GGCTCTCTCGAGCTACAAACAGACX_XX_X
13._UF 29___
GGCTCTCTCGAGCTACAAACAGACX_XX_X
14._UF 29___
___CT___CTCGAGCT_______________X_XX_X
15._UF 29___
___CT___CTCGAGCT_______________X_XX_X
16._UF 29___
___CT___CTCGAGCT_______________X_XX_X
17._UF 29___
___CT___CTCGAGCT_______________X_XX_X
18._UF 29___
___CT___CTCGAGCT_______________X_XX_X
19._UF 29___
___CT___CTCGAGCT_______________X_XX_X
20._UF 29___
___CT___CTCGAGCT_______________X_XX_X
21._UF 29___
___CT___CTCGAGCT_______________X_XX_X
22._UF 29___
___CT___CTCGAGCT_______________X_XX_X
23._UF 29___
___CT___CTCGAGCT_______________X_XX_X
24._UF 29___
___CT___CTCGAGCT_______________X_XX_X
25._UF 29___
___CT___CTCGAGCT_______________X_XX_X
26._UF 29___
___CT___CTCGAGCT_______________X_XX_X
27._UF 29___
___CT___CTCGAGCT_______________X_XX_X
28._UF 29___
___CT___CTCGAG__________________X_XX_X
29._UF 29___
___CT___CTCGAGCT_______________X_XX_X
30._UF 29___
GGAGAGAGCGAGAGAC___ACAGACX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._UF_29 GC-01-020-1-20

Location: Tree: 2
Notes: 2
 Mars, 2018

2._UF_29 GC-01-020-1-20

Location: Tree: 3
Notes: 3
 Mars, 2018

3._UF_29 GC-01-020-1-20

Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

4._UF_29 GC-01-020-1-20

Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

5._UF_29 GC-01-020-1-20

Location: Tree: 7
Notes: 7
 Mars, 2018

6._UF_29 GC-01-020-1-20

Location: Tree: 8
Notes: 8
 Mars, 2018

7._UF_29 GC-01-020-1-20

Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

8._UF_29 GC-01-020-1-20

Location: Tree: 10
Notes: 10
 Mars, 2018

9._UF_29 GC-01-020-1-20

Location: Tree: 12
Notes: 12
 Mars, 2018

10._UF_29 GC-01-020-1-20

Location: Tree: 13
Notes: 13
 Mars, 2018

11._UF_29 GC-01-020-1-20

Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

12._UF_29 GC-01-020-1-20

Location: Tree: 15
Notes: 15
 Mars, 2018

13._UF_29 GC-01-020-1-20

Location: Tree: 16
Notes: 16
 Mars, 2018

14._UF_29

Location: 1115 2
 Dapeng Zhang, 2016

15._UF_29

Location: 1115 3
 Dapeng Zhang, 2016

16._UF_29

Location: 1115 7
 Dapeng Zhang, 2016

17._UF_29

Location: 1115 8
 Dapeng Zhang, 2016

18._UF_29

Location: 1115 10
 Dapeng Zhang, 2016

19._UF_29

Location: 1115 12
 Dapeng Zhang, 2016

20._UF_29

Location: 1115 13
 Dapeng Zhang, 2016

21._UF_29

Location: 1115 15
 Dapeng Zhang, 2016

22._UF_29

Location: 1115 16
 Dapeng Zhang, 2016

23._UF_29

Location: 1115 14 > F
 Dapeng Zhang, 2016

24._UF_29

Location: 1115 4 > FP
 Dapeng Zhang, 2016

25._UF_29

Location: 1115 6 > FP
 Dapeng Zhang, 2016

26._UF_29

Location: 1115 9 > FP
 Dapeng Zhang, 2016

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

27._UF_29

Location: Cabiria
 Dapeng Zhang, 2016

28._UF_29

Location: Cabiria
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

29._UF_29

Location: 6B F454 T8
 Dapeng Zhang, 2016

USDA-TARS United States of America

30._UF_29 UF 29_Fld#_20_Plt#_5

Location: Field: 20, Tree: 5
Notes: TARS_Cacao_collection
 Mars, 2018

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP497 30TcSNP521
31TcSNP529 32TcSNP534 33TcSNP547 34TcSNP560 35TcSNP561
36TcSNP577 37TcSNP591 38TcSNP602 39TcSNP606 40TcSNP619
41TcSNP645 42TcSNP653 43TcSNP689 44TcSNP701 45TcSNP702
46TcSNP723 47TcSNP731 48TcSNP751 49TcSNP776 50TcSNP799
51TcSNP823 52TcSNP836 53TcSNP860 54TcSNP872 55TcSNP878
56TcSNP891 57TcSNP894 58TcSNP899 59TcSNP917 60TcSNP929
61TcSNP944 62TcSNP953 63TcSNP994 64TcSNP998 65TcSNP999
66TcSNP1034 67TcSNP1041 68TcSNP1060 69TcSNP1062 70TcSNP1063
71TcSNP1075 72TcSNP1096 73TcSNP1111 74TcSNP1126 75TcSNP1144
76TcSNP1149 77TcSNP1156 78TcSNP1165 79TcSNP1175 80TcSNP1242
81TcSNP1253 82TcSNP1270 83TcSNP1309 84TcSNP1350 85TcSNP1383
86TcSNP1414 87TcSNP1439 88TcSNP1442 89TcSNP1458 90TcSNP1484
91TcSNP1520 92Tcm001s00947643 93Tcm002s20575712 94Tcm003s01336581 95Tcm003s07402719
96Tcm006s26664133