SNP Profiles of LV 20 [POU]   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._LV 20 [POU]___
______CGGGTT___AG______CCTTCCCC___
2._LV 20 [POU]___
______CGGGTT___AG______CCTTCCCC___
3._LV 20 [POU]___
______CGGGTT___AG______CCTTCCCC___
4._LV 20 [POU]___
______CGGGTT___AG______CCTTCCCC___
5._LV 20 [POU]___
______CG___TT___________________________
6._LV 20 [POU]___
______CG___TT___________________________
7._LV 20 [POU]___
______CG___TT___________________________
8._LV 20 [POU]___
______CG___TT___________________________
9._LV 20 [POU]___
CTCC_________CC___CCGG____________TT
10._LV 20 [POU]___
______CGCCTT___AG______GGAACCGG___
11._LV 20 [POU]___
______________________________TTCC______
12._LV 20 [POU]___
______CG___TT___________________________
13._LV 20 [POU]___
______CG___TT___________________________
14._LV 20 [POU]___
______CG___TT___________________________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._LV 20 [POU]___
___CCGTCTAAGG______AC___CCAAGGCC
2._LV 20 [POU]___
___CCGTCTAAGG______AC___CCAAGGCC
3._LV 20 [POU]___
___CCGTCTAAGG______AC___CCAAGGCC
4._LV 20 [POU]___
___CCGTCTAAGG______AC___CCAAGGCC
5._LV 20 [POU]___
___CCGTCT____________AC___CCAA___CC
6._LV 20 [POU]___
___CCGTCT____________AC___CCAA___CC
7._LV 20 [POU]___
___CCGTCT____________AC___CCAA___CC
8._LV 20 [POU]___
___CCGTCT____________AC___CCAA___CC
9._LV 20 [POU]___
TTCC____________CCGG___TT___AA______
10._LV 20 [POU]___
___CCACAGTTGG______AC___GGAAGGGG
11._LV 20 [POU]___
___CCGTCT___GG______AC___CCAA___CC
12._LV 20 [POU]___
___CCGTCT____________AC___CCAA___CC
13._LV 20 [POU]___
___CCGTCT____________AC___CCAA___CC
14._LV 20 [POU]___
___CCGTCT____________AC___CCAA___CC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._LV 20 [POU]___
______AAGGAGAATTAG___GGAACCAG___
2._LV 20 [POU]___
______AAGGAGAATTAG___GGAACCAG___
3._LV 20 [POU]___
______AAGGAGAATTAG___GGAACCAG___
4._LV 20 [POU]___
______AAGGAGAATTAG___GGAACCAG___
5._LV 20 [POU]___
_______________AA_________GG______AG___
6._LV 20 [POU]___
_______________AA_________GG______AG___
7._LV 20 [POU]___
_______________AA_________GG______AG___
8._LV 20 [POU]___
_______________AA_________GG______AG___
9._LV 20 [POU]___
CTAA___GG____________TT_______________
10._LV 20 [POU]___
______TTGGAGAAAAAG___GGAAGG___AG
11._LV 20 [POU]___
_________GGAGAA_______________CCAG___
12._LV 20 [POU]___
_______________AA_________GG______AG___
13._LV 20 [POU]___
_______________AA_________GG______AG___
14._LV 20 [POU]___
_______________AA_________GG______AG___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._LV 20 [POU]___
___CC___CCTT___GGGTAACG___CCCTAA
2._LV 20 [POU]___
___CC___CCTT___GGGTAACG___CCCTAA
3._LV 20 [POU]___
___CC___CCTT___GGGTAACG___CCCTAA
4._LV 20 [POU]___
___CC___CCTT___GGGTAACG___CCCTAA
5._LV 20 [POU]___
_________CCTT______GT___CG___CC______
6._LV 20 [POU]___
_________CCTT______GT___CG___CC______
7._LV 20 [POU]___
_________CCTT______GT___CG___CC______
8._LV 20 [POU]___
_________CCTT______GT___CG___CC______
9._LV 20 [POU]___
AC___CTCC___AA_________CGAACCCT___
10._LV 20 [POU]___
___CC___CC______GGACAACG___CCAG___
11._LV 20 [POU]___
_________CCTT______GT___CG___CCCT___
12._LV 20 [POU]___
_________CCTT______GT___CG___CC______
13._LV 20 [POU]___
_________CCTT______GT___CG___CC______
14._LV 20 [POU]___
_________CCTT______GT___CG___CC______
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._LV 20 [POU]___
TT_________AGAA___AACCCTGTAG___TT
2._LV 20 [POU]___
TT_________AGAA___AACCCTGTAG___TT
3._LV 20 [POU]___
TT_________AGAA___AACCCTGTAG___TT
4._LV 20 [POU]___
TT_________AGAA___AACCCTGTAG___TT
5._LV 20 [POU]___
TT_________AG_______________GT_________
6._LV 20 [POU]___
TT_________AG_______________GT_________
7._LV 20 [POU]___
TT_________AG_______________GT_________
8._LV 20 [POU]___
TT_________AG_______________GT_________
9._LV 20 [POU]___
___CTAACCGG___CG______CCGTAGTT___
10._LV 20 [POU]___
AA____________AG___AA______ACAG___AA
11._LV 20 [POU]___
TT________________________CCGTAG______
12._LV 20 [POU]___
TT_________GG_______________GT_________
13._LV 20 [POU]___
TT_________GG_______________GT_________
14._LV 20 [POU]___
TT_________GG_______________GT_________
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._LV 20 [POU]___
TTTT___AC___GGAAGGCGCTCGAGCTGG
2._LV 20 [POU]___
TTTT___AC___GGAAGGCGCTCGAGCTGG
3._LV 20 [POU]___
TTTT___AC___GGAAGGCGCTCGAGCTGG
4._LV 20 [POU]___
TTTT___AC___GGAAGGCGCTCGAGCTGG
5._LV 20 [POU]___
_____________________GG___CT______CTGG
6._LV 20 [POU]___
_____________________GG___CT______CTGG
7._LV 20 [POU]___
_____________________GG___CT______CTGG
8._LV 20 [POU]___
_____________________GG___CT______CTGG
9._LV 20 [POU]___
______TTACAACT___GG_________AG______
10._LV 20 [POU]___
AAAA___AC___CCAACC___AGCGAGAGGG
11._LV 20 [POU]___
___TT___AC_________GGCGTT____________
12._LV 20 [POU]___
_____________________GG___CT______CTGG
13._LV 20 [POU]___
_____________________GG___CT______CTGG
14._LV 20 [POU]___
_____________________GG___CT______CTGG
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1._LV 20 [POU]___
CC___ATTTAGTT______TTCC___CCAGGG
2._LV 20 [POU]___
CC___ATTTAGTT______TTCC___CCAGGG
3._LV 20 [POU]___
CC___ATTTAGTT______TTCC___CCAGGG
4._LV 20 [POU]___
CC___ATTTAGTT______TTCC___CCAGGG
5._LV 20 [POU]___
______ATTTAG__________________CCAG___
6._LV 20 [POU]___
______ATTTAG__________________CCAG___
7._LV 20 [POU]___
______ATTTAG__________________CCAG___
8._LV 20 [POU]___
______ATTTAG__________________CCAG___
9._LV 20 [POU]___
___CC______AGTTTTAA______CT___AG___
10._LV 20 [POU]___
GG___ATAAAG_________AA______GGAGCC
11._LV 20 [POU]___
____________AGTT_______________CC___GG
12._LV 20 [POU]___
______ATTTAG__________________CCAG___
13._LV 20 [POU]___
______ATTTAG__________________CCAG___
14._LV 20 [POU]___
______ATTTAG__________________CCAG___
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1._LV 20 [POU]___
ATCTAG___TTCTTTTTCCGG______ACGT
2._LV 20 [POU]___
ATCTAG___TTCTTTTTCCGG______ACGT
3._LV 20 [POU]___
ATCTAG___TTCTTTTTCCGG______ACGT
4._LV 20 [POU]___
ATCTAG___TTCTTTTTCCGG______ACGT
5._LV 20 [POU]___
AT____________CT______CC____________GT
6._LV 20 [POU]___
AT____________CT______CC____________GT
7._LV 20 [POU]___
AT____________CT______CC____________GT
8._LV 20 [POU]___
AT____________CT______CC____________GT
9._LV 20 [POU]___
_________CT___CT____________TTAA___GT
10._LV 20 [POU]___
ATAGAG_________AAAA___CC_________AC
11._LV 20 [POU]___
______AG___TT________________________GT
12._LV 20 [POU]___
AT____________CT______CC____________GT
13._LV 20 [POU]___
AT____________CT______CC____________GT
14._LV 20 [POU]___
AT____________CT______CC____________GT
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1._LV 20 [POU]___
CT______TTAAGG______CTCTCTCGAGTT
2._LV 20 [POU]___
CT______TTAAGG______CTCTCTCGAGTT
3._LV 20 [POU]___
CT______TTAAGG______CTCTCTCGAGTT
4._LV 20 [POU]___
CT______TTAAGG______CTCTCTCGAGTT
5._LV 20 [POU]___
CT_________AA_________CT___CTCGAGTT
6._LV 20 [POU]___
CT_________AA_________CT___CTCGAGTT
7._LV 20 [POU]___
CT_________AA_________CT___CTCGAGTT
8._LV 20 [POU]___
CT_________AA_________CT___CTCGAGTT
9._LV 20 [POU]___
___GTTT_________AGGG_________CG______
10._LV 20 [POU]___
AG______AAACGG______AGAGAGCGAGAA
11._LV 20 [POU]___
_________TT_______________CTCTCGAG___
12._LV 20 [POU]___
CT_________AC_________CT___CTCGAGTT
13._LV 20 [POU]___
CT_________AC_________CT___CTCGAGTT
14._LV 20 [POU]___
CT_________AC_________CT___CTCGAGTT
 127 128 129 130 131 132 133        
1._LV 20 [POU]___
______CCAAACAGACX_XX_XX_XX_XX_XX_XX_X
2._LV 20 [POU]___
______CCAAACAGACX_XX_XX_XX_XX_XX_XX_X
3._LV 20 [POU]___
______CCAAACAGACX_XX_XX_XX_XX_XX_XX_X
4._LV 20 [POU]___
______CCAAACAGACX_XX_XX_XX_XX_XX_XX_X
5._LV 20 [POU]___
_____________________X_XX_XX_XX_XX_XX_XX_X
6._LV 20 [POU]___
_____________________X_XX_XX_XX_XX_XX_XX_X
7._LV 20 [POU]___
_____________________X_XX_XX_XX_XX_XX_XX_X
8._LV 20 [POU]___
_____________________X_XX_XX_XX_XX_XX_XX_X
9._LV 20 [POU]___
TTAT_______________X_XX_XX_XX_XX_XX_XX_X
10._LV 20 [POU]___
______CC___ACAGACX_XX_XX_XX_XX_XX_XX_X
11._LV 20 [POU]___
_____________________X_XX_XX_XX_XX_XX_XX_X
12._LV 20 [POU]___
_____________________X_XX_XX_XX_XX_XX_XX_X
13._LV 20 [POU]___
_____________________X_XX_XX_XX_XX_XX_XX_X
14._LV 20 [POU]___
_____________________X_XX_XX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._LV_20_[POU] GC-04-027-2-09

Location: Tree: 1
Notes: 1
 Mars, 2018

2._LV_20_[POU] GC-04-027-2-09

Location: Tree: 3
Notes: 3
 Mars, 2018

3._LV_20_[POU] GC-04-027-2-09

Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

4._LV_20_[POU] GC-04-027-2-09

Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018

5._LV_20_[POU]

Location: 4209 1
 Dapeng Zhang, 2016

6._LV_20_[POU]

Location: 4209 3
 Dapeng Zhang, 2016

7._LV_20_[POU]

Location: 4209 4 > FP
 Dapeng Zhang, 2016

8._LV_20_[POU]

Location: 4209 8 > FP
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

9._LV_20_[POU] RUQ 354

 Lambert Motilal, 2023
Population Assignment: 

10._LV_20_[POU] RUQ 354

Notes: Reading_Collection
 Mars, 2018

11._LV_20_[POU] RUQ 354

 Dapeng Zhang, 2014

12._LV_20_[POU] RUQ 354

 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

13._LV_20_[POU]

Location: Marper C 563
 Dapeng Zhang, 2016

14._LV_20_[POU]

Location: Marper C 562
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP364 34TcSNP372 35TcSNP413
36TcSNP418 37TcSNP421 38TcSNP429 39TcSNP430 40TcSNP448
41TcSNP469 42TcSNP497 43TcSNP519 44TcSNP521 45TcSNP522
46TcSNP529 47TcSNP534 48TcSNP546 49TcSNP547 50TcSNP560
51TcSNP561 52TcSNP577 53TcSNP589 54TcSNP591 55TcSNP602
56TcSNP606 57TcSNP619 58TcSNP640 59TcSNP642 60TcSNP644
61TcSNP645 62TcSNP653 63TcSNP660 64TcSNP689 65TcSNP701
66TcSNP702 67TcSNP723 68TcSNP731 69TcSNP739 70TcSNP751
71TcSNP776 72TcSNP799 73TcSNP800 74TcSNP823 75TcSNP835
76TcSNP836 77TcSNP860 78TcSNP872 79TcSNP878 80TcSNP891
81TcSNP894 82TcSNP899 83TcSNP917 84TcSNP929 85TcSNP944
86TcSNP945 87TcSNP953 88TcSNP994 89TcSNP998 90TcSNP999
91TcSNP1010 92TcSNP1019 93TcSNP1034 94TcSNP1041 95TcSNP1053
96TcSNP1060 97TcSNP1062 98TcSNP1063 99TcSNP1075 100TcSNP1096
101TcSNP1111 102TcSNP1112 103TcSNP1126 104TcSNP1144 105TcSNP1149
106TcSNP1156 107TcSNP1165 108TcSNP1175 109TcSNP1205 110TcSNP1230
111TcSNP1242 112TcSNP1253 113TcSNP1270 114TcSNP1275 115TcSNP1293
116TcSNP1309 117TcSNP1350 118TcSNP1383 119TcSNP1401 120TcSNP1404
121TcSNP1414 122TcSNP1439 123TcSNP1442 124TcSNP1458 125TcSNP1484
126TcSNP1520 127TcSNP1524 128TcSNP1527 129Tcm001s00947643 130Tcm002s20575712
131Tcm003s01336581 132Tcm003s07402719 133Tcm006s26664133