SNP Profiles of UF 712   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._UF 712___
______CCGGAA___AA______CCTTCCTT___
2._UF 712___
______CCGGAA___AA______CCTTCCTT___
3._UF 712___
______CCGGAA___AA______CCTTCCTT___
4._UF 712___
______CCGGAA___AA______CCTTCCTT___
5._UF 712___
______CC___AA___________________________
6._UF 712___
______CC___AA___________________________
7._UF 712___
______CC___AA___________________________
8._UF 712___
______CC___AA___________________________
9._UF 712___
______CC___AA___________________________
10._UF 712___
______CC___AA___________________________
11._UF 712___
CTAA_________TT___CCGG____________TT
12._UF 712___
______CCCCAA___AA______GGAACCAA___
13._UF 712___
______________________________TTCC______
14._UF 712___
______________________________TTCC______
15._UF 712___
______CC___AA___________________________
16._UF 712___
______CC___AA___________________________
17._UF 712___
______CCCCAA___AA______GGAACCAA___
18._UF 712___
______CCCCAA___AA______GGAACCAA___
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._UF 712___
___CCGGTTAAGG______CC___CCAAGGCC
2._UF 712___
___CCGGTTAAGG______CC___CCAAGGCC
3._UF 712___
___CCGGTTAAGG______CC___CCAAGGCC
4._UF 712___
___CCGGTTAAGG______CC___CCAAGGCC
5._UF 712___
___CCGGTT____________CC___CCAA___CC
6._UF 712___
___CCGGTT____________CC___CCAA___CC
7._UF 712___
___CCGGTT____________CC___CCAA___CC
8._UF 712___
___CCGGTT____________CC___CCAA___CC
9._UF 712___
___CCGGTT____________CC___CCAA___CC
10._UF 712___
___CCGGTT____________CC___CC______CC
11._UF 712___
AACC____________TTAA___GG___AA______
12._UF 712___
___CCCCAATTGG______CC___GGAAGGGG
13._UF 712___
___CCGGTT___GG______CC___CCAA___CC
14._UF 712___
___CCGGTT___GG______CC___CCAA___CC
15._UF 712___
___CCGGTT____________CC___CCAA___CC
16._UF 712___
___CCGGTT____________CC___CCAA___CC
17._UF 712___
___CCCCAATTGG______CC___GGAAGGGG
18._UF 712___
___CCCCAATTGG______CC___GGAAGGGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._UF 712___
______TTAA___GGTTCCAA___AAAACCGG
2._UF 712___
______TTAA___GGTTCCAA___AAAACCGG
3._UF 712___
______TTAA___GGTTCCAA___AAAACCGG
4._UF 712___
______TTAA___GGTTCCAA___AAAACCGG
5._UF 712___
__________________TT_________AA______GG
6._UF 712___
__________________TT_________AA______GG
7._UF 712___
__________________TT_________AA______GG
8._UF 712___
__________________TT_________AA______GG
9._UF 712___
__________________TT_________AA______GG
10._UF 712___
__________________TT_________AA______GG
11._UF 712___
CCAA___AAAC____________CC____________
12._UF 712___
______AAAA___GGTTGGAA___AAAAGG___
13._UF 712___
_________AA___GGTT_______________CCGG
14._UF 712___
_________AA___GGTT_______________CCGG
15._UF 712___
__________________TT_________AA______GG
16._UF 712___
__________________TT_________AA______GG
17._UF 712___
______AAAA___GGTTGGAA___AAAAGG___
18._UF 712___
______AAAA___GGTTGGAA___AAAAGG___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._UF 712___
______AA___AACC___AAGGGGGG___CCCC
2._UF 712___
______AA___AACC___AAGGGGGG___CCCC
3._UF 712___
______AA___AACC___AAGGGGGG___CCCC
4._UF 712___
______AA___AACC___AAGGGGGG___CCCC
5._UF 712___
____________AACC______GG___GG___CC___
6._UF 712___
____________AACC______GG___GG___CC___
7._UF 712___
____________AACC______GG___GG___CC___
8._UF 712___
____________AACC______GG___GG___CC___
9._UF 712___
____________AACC______GG___GG___CC___
10._UF 712___
____________AACC______GG___GG___TT___
11._UF 712___
___AA___CCAA___AA_________GGAA___CC
12._UF 712___
GG___AA___AA______AACCGGGG___CCGG
13._UF 712___
____________AACC______GG___GG___CCCC
14._UF 712___
____________AACC______GG___GG___CCCC
15._UF 712___
____________AACC______GG___GG___CC___
16._UF 712___
____________AACC______GG___GG___CC___
17._UF 712___
GG___AA___AA______AACCGGGG___CCGG
18._UF 712___
GG___AA___AA______AACCGGGG___CCGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._UF 712___
GGCT_________AAAA___AATTTTGGAA___
2._UF 712___
GGCT_________AAAA___AATTTTGGAA___
3._UF 712___
GGCT_________AAAA___AATTTTGGAA___
4._UF 712___
GGCT_________AAAA___AATTTTGGAA___
5._UF 712___
___CT_________AA_______________GG______
6._UF 712___
___CT_________AA_______________GG______
7._UF 712___
___CT_________AA_______________GG______
8._UF 712___
___CT_________AA_______________GG______
9._UF 712___
___CT_________GG_______________GG______
10._UF 712___
___CT_________GG_______________GG______
11._UF 712___
______TTAACCGG___CC______TTGGAACC
12._UF 712___
___AG____________AA___AA______CCAA___
13._UF 712___
___CT________________________TTGGAA___
14._UF 712___
___CT________________________TTGGAA___
15._UF 712___
___CT_________GG_______________GG______
16._UF 712___
___CT_________GG_______________GG______
17._UF 712___
___AG____________AA___AA______CCAA___
18._UF 712___
___AG____________AA___AA______CCAA___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._UF 712___
TTTTTT___CC___CCAAGGGGTTGGGGCC
2._UF 712___
TTTTTT___CC___CCAAGGGGTTGGGGCC
3._UF 712___
TTTTTT___CC___CCAAGGGGTTGGGGCC
4._UF 712___
TTTTTT___CC___CCAAGGGGTTGGGGCC
5._UF 712___
________________________GG___TT______CC
6._UF 712___
________________________GG___TT______CC
7._UF 712___
________________________GG___TT______CC
8._UF 712___
________________________GG___TT______CC
9._UF 712___
________________________GG___TT______CC
10._UF 712___
________________________GG___TT______CC
11._UF 712___
_________TTCCAACC___GG_________GG___
12._UF 712___
AAAAAA___CC___GGAACC___AACCGGGG
13._UF 712___
______TT___CC_________GGGGTT_________
14._UF 712___
______TT___CC_________GGGGTT_________
15._UF 712___
________________________GG___TT______CC
16._UF 712___
________________________GG___TT______CC
17._UF 712___
AAAAAA___CC___GGAACC___AACCGGGG
18._UF 712___
AAAAAA___CC___GGAACC___AACCGGGG
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1._UF 712___
GGCC___TTTTAACC______TTCC___CCGG
2._UF 712___
GGCC___TTTTAACC______TTCC___CCGG
3._UF 712___
GGCC___TTTTAACC______TTCC___CCGG
4._UF 712___
GGCC___TTTTAACC______TTCC___CCGG
5._UF 712___
GG______TTTTAA__________________CCGG
6._UF 712___
GG______TTTTAA__________________CCGG
7._UF 712___
GG______TTTTAA__________________CCGG
8._UF 712___
GG______TTTTAA__________________CCGG
9._UF 712___
_________TTTTAA__________________CCGG
10._UF 712___
_________TTTTAA__________________CCGG
11._UF 712___
______CC______AACCCCAA______CC___GG
12._UF 712___
GGGG___TTAAAA_________AA______GGGG
13._UF 712___
_______________AACC_______________CC___
14._UF 712___
_______________AACC_______________CC___
15._UF 712___
GG______TTTTAA__________________CCGG
16._UF 712___
GG______TTTTAA__________________CCGG
17._UF 712___
GGGG___TTAAAA_________AA______GGGG
18._UF 712___
GGGG___TTAAAA_________AA______GGGG
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1._UF 712___
GGTTTTGG___TTCCCCTTCCTT_________
2._UF 712___
GGTTTTGG___TTCCCCTTCCTT_________
3._UF 712___
GGTTTTGG___TTCCCCTTCCTT_________
4._UF 712___
GGTTTTGG___TTCCCCTTCCTT_________
5._UF 712___
___TT____________CC______CC____________
6._UF 712___
___TT____________CC______CC____________
7._UF 712___
___TT____________CC______CC____________
8._UF 712___
___TT____________CC______CC____________
9._UF 712___
___AT____________CC______CC____________
10._UF 712___
___AT____________CC______CC____________
11._UF 712___
____________CC___CC____________GGAACC
12._UF 712___
CCATAAGG_________GGAA___AA_________
13._UF 712___
GG______GG___TT________________________
14._UF 712___
GG______GG___TT________________________
15._UF 712___
___AT____________CC______CC____________
16._UF 712___
___AT____________CC______CC____________
17._UF 712___
CCATAAGG_________GGAA___AA_________
18._UF 712___
CCATAAGG_________GGAA___AA_________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1._UF 712___
AAGGTT____________GG___CCCCTTCCGG
2._UF 712___
AAGGTT____________GG___CCCCTTCCGG
3._UF 712___
AAGGTT____________GG___CCCCTT___GG
4._UF 712___
AAGGTT____________GG___CCCCTTCCGG
5._UF 712___
___GGTT__________________CC___TTCCGG
6._UF 712___
___GGTT__________________CC___TTCCGG
7._UF 712___
___GGTT__________________CC___TT___GG
8._UF 712___
___GGTT__________________CC___TTCCGG
9._UF 712___
___GGTT_________CC______CC___TTCCGG
10._UF 712___
___GGTT_________CC______CC___TTCCGG
11._UF 712___
___GG___GGTT_________AA_________CC___
12._UF 712___
___CCAA______GGCCGG___GGGGAAGGGG
13._UF 712___
___GG_________CC____________CCTTCCGG
14._UF 712___
___GG_________CC____________CCTTCCGG
15._UF 712___
___GGTT_________CC______CC___TTCCGG
16._UF 712___
___GGTT_________CC______CC___TTCCGG
17._UF 712___
___CCAA______GGCCGG___GGGGAAGGGG
18._UF 712___
___CCAA______GGCCGG___GGGGAAGGGG
 127 128 129 130 131 132 133 134       
1._UF 712___
CC______AAAACCGGAAX_XX_XX_XX_XX_XX_X
2._UF 712___
CC______AAAACCGGAAX_XX_XX_XX_XX_XX_X
3._UF 712___
CC______AAAACCGGAAX_XX_XX_XX_XX_XX_X
4._UF 712___
CC______AAAACCGGAAX_XX_XX_XX_XX_XX_X
5._UF 712___
CC_____________________X_XX_XX_XX_XX_XX_X
6._UF 712___
CC_____________________X_XX_XX_XX_XX_XX_X
7._UF 712___
CC_____________________X_XX_XX_XX_XX_XX_X
8._UF 712___
CC_____________________X_XX_XX_XX_XX_XX_X
9._UF 712___
CC_____________________X_XX_XX_XX_XX_XX_X
10._UF 712___
CC_____________________X_XX_XX_XX_XX_XX_X
11._UF 712___
___CTAA_______________X_XX_XX_XX_XX_XX_X
12._UF 712___
GG______AA___CCGGAAX_XX_XX_XX_XX_XX_X
13._UF 712___
________________________X_XX_XX_XX_XX_XX_X
14._UF 712___
________________________X_XX_XX_XX_XX_XX_X
15._UF 712___
CC_____________________X_XX_XX_XX_XX_XX_X
16._UF 712___
CC_____________________X_XX_XX_XX_XX_XX_X
17._UF 712___
GG______AA___CCGGAAX_XX_XX_XX_XX_XX_X
18._UF 712___
GG______AA___CCGGAAX_XX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._UF_712 GC-01-089-5-06

Location: Tree: 1
Notes: 1
 Mars, 2018

2._UF_712 GC-01-089-5-06

Location: Tree: 2
Notes: 2
 Mars, 2018

3._UF_712 GC-01-089-5-06

Location: Tree: 3
Notes: 3
 Mars, 2018

4._UF_712 GC-01-089-5-06

Location: Tree: 4
Notes: 4
 Mars, 2018

5._UF_712

Location: 1506 1
 Dapeng Zhang, 2016

6._UF_712

Location: 1506 2
 Dapeng Zhang, 2016

7._UF_712

Location: 1506 3
 Dapeng Zhang, 2016

8._UF_712

Location: 1506 4
 Dapeng Zhang, 2016

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

9._UF_712

Location: Cabiria
 Dapeng Zhang, 2016

10._UF_712

Location: La Montaña Lot 6 Row 39 34_36
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

11._UF_712 RUQ 1683

 Lambert Motilal, 2023
Population Assignment: 

12._UF_712 RUQ 1683

Notes: Reading_Collection
 Mars, 2018

13._UF_712 RUQ 1683

 Dapeng Zhang, 2014

14._UF_712 RUQ 1638

 Dapeng Zhang, 2014

15._UF_712 RUQ 1638

 Dapeng Zhang, 2016

16._UF_712 RUQ 1638

 Dapeng Zhang, 2016

USDA-SHRS United States of America

17._UF_712 MITC-000350

 Mars, 2018

18._UF_712 MITC-000039

 Mars, 2018

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1237 113TcSNP1242 114TcSNP1253 115TcSNP1270
116TcSNP1275 117TcSNP1293 118TcSNP1309 119TcSNP1350 120TcSNP1383
121TcSNP1401 122TcSNP1414 123TcSNP1439 124TcSNP1442 125TcSNP1458
126TcSNP1484 127TcSNP1520 128TcSNP1524 129TcSNP1527 130Tcm001s00947643
131Tcm002s20575712 132Tcm003s01336581 133Tcm003s07402719 134Tcm006s26664133