SNP Profiles of "UF 712"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-01-089-5-06
CCGGAAAACCTTCCTTCCGGTTAAGGCC
2. _GC-01-089-5-06
CCGGAAAACCTTCCTTCCGGTTAAGGCC
3. _GC-01-089-5-06
CCGGAAAACCTTCCTTCCGGTTAAGGCC
4. _GC-01-089-5-06
CCGGAAAACCTTCCTTCCGGTTAAGGCC
5. _1506_1
CC___AA_______________CCGGTT______CC
6. _1506_2
CC___AA_______________CCGGTT______CC
7. _1506_3
CC___AA_______________CCGGTT______CC
8. _1506_4
CC___AA_______________CCGGTT______CC
9. _Cabiria
CC___AA_______________CCGGTT______CC
10. _La_Montaña_Lot_6_Row_39_34_36
CC___AA_______________CCGGTT______CC
11. _RUQ_1683
CCCCAAAAGGAACCAACCCCAATTGGCC
12. _RUQ_1683
_______________TTCC___CCGGTT___GGCC
13. _RUQ_1638
_______________TTCC___CCGGTT___GGCC
14. _RUQ_1638
CC___AA_______________CCGGTT______CC
15. _RUQ_1638
CC___AA_______________CCGGTT______CC
16. _MITC-000350
CCCCAAAAGGAACCAACCCCAATTGGCC
17. _MITC-000039
CCCCAAAAGGAACCAACCCCAATTGGCC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-01-089-5-06
CCAAGGCCTTAAGGTTCCAAAAAACCGG
2. _GC-01-089-5-06
CCAAGGCCTTAAGGTTCCAAAAAACCGG
3. _GC-01-089-5-06
CCAAGGCCTTAAGGTTCCAAAAAACCGG
4. _GC-01-089-5-06
CCAAGGCCTTAAGGTTCCAAAAAACCGG
5. _1506_1
CCAA___CC_________TT______AA______GG
6. _1506_2
CCAA___CC_________TT______AA______GG
7. _1506_3
CCAA___CC_________TT______AA______GG
8. _1506_4
CCAA___CC_________TT______AA______GG
9. _Cabiria
CCAA___CC_________TT______AA______GG
10. _La_Montaña_Lot_6_Row_39_34_36
CC______CC_________TT______AA______GG
11. _RUQ_1683
GGAAGGGGAAAAGGTTGGAAAAAAGG___
12. _RUQ_1683
CCAA___CC___AAGGTT____________CCGG
13. _RUQ_1638
CCAA___CC___AAGGTT____________CCGG
14. _RUQ_1638
CCAA___CC_________TT______AA______GG
15. _RUQ_1638
CCAA___CC_________TT______AA______GG
16. _MITC-000350
GGAAGGGGAAAAGGTTGGAAAAAAGG___
17. _MITC-000039
GGAAGGGGAAAAGGTTGGAAAAAAGG___
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-01-089-5-06
___AAAACCAAGGGGGGCCCCGGCTAAAA
2. _GC-01-089-5-06
___AAAACCAAGGGGGGCCCCGGCTAAAA
3. _GC-01-089-5-06
___AAAACCAAGGGGGGCCCCGGCTAAAA
4. _GC-01-089-5-06
___AAAACCAAGGGGGGCCCCGGCTAAAA
5. _1506_1
______AACC___GG___GGCC______CTAA___
6. _1506_2
______AACC___GG___GGCC______CTAA___
7. _1506_3
______AACC___GG___GGCC______CTAA___
8. _1506_4
______AACC___GG___GGCC______CTAA___
9. _Cabiria
______AACC___GG___GGCC______CTGG___
10. _La_Montaña_Lot_6_Row_39_34_36
______AACC___GG___GGTT______CTGG___
11. _RUQ_1683
GGAAAA___AACCGGGGCCGG___AG___AA
12. _RUQ_1683
______AACC___GG___GGCCCC___CT______
13. _RUQ_1638
______AACC___GG___GGCCCC___CT______
14. _RUQ_1638
______AACC___GG___GGCC______CTGG___
15. _RUQ_1638
______AACC___GG___GGCC______CTGG___
16. _MITC-000350
GGAAAA___AACCGGGGCCGG___AG___AA
17. _MITC-000039
GGAAAA___AACCGGGGCCGG___AG___AA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-01-089-5-06
AATTTTGGAATTTTTTCCCCAAGGGGTT
2. _GC-01-089-5-06
AATTTTGGAATTTTTTCCCCAAGGGGTT
3. _GC-01-089-5-06
AATTTTGGAATTTTTTCCCCAAGGGGTT
4. _GC-01-089-5-06
AATTTTGGAATTTTTTCCCCAAGGGGTT
5. _1506_1
_________GG_____________________GG___TT
6. _1506_2
_________GG_____________________GG___TT
7. _1506_3
_________GG_____________________GG___TT
8. _1506_4
_________GG_____________________GG___TT
9. _Cabiria
_________GG_____________________GG___TT
10. _La_Montaña_Lot_6_Row_39_34_36
_________GG_____________________GG___TT
11. _RUQ_1683
AA______CCAAAAAAAACCGGAACC___AA
12. _RUQ_1683
______TTGGAA______TTCC______GGGGTT
13. _RUQ_1638
______TTGGAA______TTCC______GGGGTT
14. _RUQ_1638
_________GG_____________________GG___TT
15. _RUQ_1638
_________GG_____________________GG___TT
16. _MITC-000350
AA______CCAAAAAAAACCGGAACC___AA
17. _MITC-000039
AA______CCAAAAAAAACCGGAACC___AA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-01-089-5-06
GGGGCCGGCCTTTTAACCTTCCCCGGGG
2. _GC-01-089-5-06
GGGGCCGGCCTTTTAACCTTCCCCGGGG
3. _GC-01-089-5-06
GGGGCCGGCCTTTTAACCTTCCCCGGGG
4. _GC-01-089-5-06
GGGGCCGGCCTTTTAACCTTCCCCGGGG
5. _1506_1
______CCGG___TTTTAA_________CCGG___
6. _1506_2
______CCGG___TTTTAA_________CCGG___
7. _1506_3
______CCGG___TTTTAA_________CCGG___
8. _1506_4
______CCGG___TTTTAA_________CCGG___
9. _Cabiria
______CC______TTTTAA_________CCGG___
10. _La_Montaña_Lot_6_Row_39_34_36
______CC______TTTTAA_________CCGG___
11. _RUQ_1683
CCGGGGGGGGTTAAAA___AA___GGGGCC
12. _RUQ_1683
___-_______________AACC______CC___GG
13. _RUQ_1638
___-_______________AACC______CC___GG
14. _RUQ_1638
______CCGG___TTTTAA_________CCGG___
15. _RUQ_1638
______CCGG___TTTTAA_________CCGG___
16. _MITC-000350
CCGGGGGGGGTTAAAA___AA___GGGGCC
17. _MITC-000039
CCGGGGGGGGTTAAAA___AA___GGGGCC
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-01-089-5-06
TTTTGGTTCCCCTTCCTTAAGGTT______
2. _GC-01-089-5-06
TTTTGGTTCCCCTTCCTTAAGGTT______
3. _GC-01-089-5-06
TTTTGGTTCCCCTTCCTTAAGGTT______
4. _GC-01-089-5-06
TTTTGGTTCCCCTTCCTTAAGGTT______
5. _1506_1
TT_________CC______CC______GGTT______
6. _1506_2
TT_________CC______CC______GGTT______
7. _1506_3
TT_________CC______CC______GGTT______
8. _1506_4
TT_________CC______CC______GGTT______
9. _Cabiria
AT_________CC______CC______GGTT___CC
10. _La_Montaña_Lot_6_Row_39_34_36
AT_________CC______CC______GGTT___CC
11. _RUQ_1683
ATAAGG______GGAA___AA___CCAAGGCC
12. _RUQ_1683
______GGTT__________________GG___CC___
13. _RUQ_1638
______GGTT__________________GG___CC___
14. _RUQ_1638
AT_________CC______CC______GGTT___CC
15. _RUQ_1638
AT_________CC______CC______GGTT___CC
16. _MITC-000350
ATAAGG______GGAA___AA___CCAAGGCC
17. _MITC-000039
ATAAGG______GGAA___AA___CCAAGGCC
 85 86 87 88 89 90 91 92 93 94 95 96   
1. _GC-01-089-5-06
GGCCCCTTCCGGCCAAAACCGGAAX_XX_X
2. _GC-01-089-5-06
GGCCCCTTCCGGCCAAAACCGGAAX_XX_X
3. _GC-01-089-5-06
GGCCCCTT___GGCCAAAACCGGAAX_XX_X
4. _GC-01-089-5-06
GGCCCCTTCCGGCCAAAACCGGAAX_XX_X
5. _1506_1
___CC___TTCCGGCC_______________X_XX_X
6. _1506_2
___CC___TTCCGGCC_______________X_XX_X
7. _1506_3
___CC___TT___GGCC_______________X_XX_X
8. _1506_4
___CC___TTCCGGCC_______________X_XX_X
9. _Cabiria
___CC___TTCCGGCC_______________X_XX_X
10. _La_Montaña_Lot_6_Row_39_34_36
___CC___TTCCGGCC_______________X_XX_X
11. _RUQ_1683
GGGGGGAAGGGGGGAA___CCGGAAX_XX_X
12. _RUQ_1683
______CCTTCCGG__________________X_XX_X
13. _RUQ_1638
______CCTTCCGG__________________X_XX_X
14. _RUQ_1638
___CC___TTCCGGCC_______________X_XX_X
15. _RUQ_1638
___CC___TTCCGGCC_______________X_XX_X
16. _MITC-000350
GGGGGGAAGGGGGGAA___CCGGAAX_XX_X
17. _MITC-000039
GGGGGGAAGGGGGGAA___CCGGAAX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._UF_712 GC-01-089-5-06
Location: Tree: 1
Notes: 1
 Mars, 2018
2._UF_712 GC-01-089-5-06
Location: Tree: 2
Notes: 2
 Mars, 2018
3._UF_712 GC-01-089-5-06
Location: Tree: 3
Notes: 3
 Mars, 2018
4._UF_712 GC-01-089-5-06
Location: Tree: 4
Notes: 4
 Mars, 2018
5._UF_712
Location: 1506 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
6._UF_712
Location: 1506 2
 Dapeng Zhang, 2016
7._UF_712
Location: 1506 3
 Dapeng Zhang, 2016
8._UF_712
Location: 1506 4
 Dapeng Zhang, 2016

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

9._UF_712
Location: Cabiria
 Dapeng Zhang, 2016
10._UF_712
Location: La Montaña Lot 6 Row 39 34_36
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

11._UF_712 RUQ 1683
Notes: Reading_Collection
 Mars, 2018
12._UF_712 RUQ 1683
 Dapeng Zhang, 2014
13._UF_712 RUQ 1638
 Dapeng Zhang, 2014
14._UF_712 RUQ 1638
 Dapeng Zhang, 2016
15._UF_712 RUQ 1638
 Dapeng Zhang, 2016

USDA-SHRS United States of America

16._UF_712 MITC-000350
 Mars, 2018
17._UF_712 MITC-000039
 Mars, 2018

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP497 30TcSNP521
31TcSNP529 32TcSNP534 33TcSNP547 34TcSNP560 35TcSNP561
36TcSNP577 37TcSNP591 38TcSNP602 39TcSNP606 40TcSNP619
41TcSNP645 42TcSNP653 43TcSNP689 44TcSNP701 45TcSNP702
46TcSNP723 47TcSNP731 48TcSNP751 49TcSNP776 50TcSNP799
51TcSNP823 52TcSNP836 53TcSNP860 54TcSNP872 55TcSNP878
56TcSNP891 57TcSNP894 58TcSNP899 59TcSNP917 60TcSNP929
61TcSNP944 62TcSNP953 63TcSNP994 64TcSNP998 65TcSNP999
66TcSNP1034 67TcSNP1041 68TcSNP1060 69TcSNP1062 70TcSNP1063
71TcSNP1075 72TcSNP1096 73TcSNP1111 74TcSNP1126 75TcSNP1144
76TcSNP1149 77TcSNP1156 78TcSNP1165 79TcSNP1175 80TcSNP1242
81TcSNP1253 82TcSNP1270 83TcSNP1309 84TcSNP1350 85TcSNP1383
86TcSNP1414 87TcSNP1439 88TcSNP1442 89TcSNP1458 90TcSNP1484
91TcSNP1520 92Tcm001s00947643 93Tcm002s20575712 94Tcm003s01336581 95Tcm003s07402719
96Tcm006s26664133