SNP Profiles of "UF 676"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-08-080-2-03
______GGGGAT___AG______CTCTACCT___
2. _GC-08-080-2-03
______GGGGAT___AG______CTCTACCT___
3. _GC-08-080-2-03
______GGGGAT___AG______CTCTACCT___
4. _GC-08-080-2-03
______GGGGAT___AG______CTCTACCT___
5. _8203_3_>_FP
______GG___AT___________________________
6. _8203_4_>_FP
______GG___AT___________________________
7. _8203_5_>_FP
______GG___AT___________________________
8. _8203_7_>_FP
______GG___AT___________________________
9. _Cabiria
______GG___AT___________________________
10. _RUQ_56
__________________________________________
11. _RUQ_56
TTAC_________CT___ACTT____________GT
12. _RUQ_56
______GGCCAT___AG______AGAGACAG___
13. _RUQ_56
______________________________CTAC______
14. _RUQ_56
______GG___AT___________________________
15. _KW_293_I-043
______GG___AT___________________________
16. _C0245
______GG___AT___________________________
17. _MITC-000064
______GGCCAT___AG______AGAGACAG___
18. _UF_676_Fld#_180_Plt#_2
______GGCCAT___AG______AGAGACAG___
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-08-080-2-03
___ACGTCTATAG______AC___CGAGGGCT
2. _GC-08-080-2-03
___ACGTCTATAG______AC___CGAGGGCT
3. _GC-08-080-2-03
___ACGTCTATAG______AC___CGAGGGCT
4. _GC-08-080-2-03
___ACGTCTATAG______AC___CGAGGGCT
5. _8203_3_>_FP
___ACGTCT____________AC___CGAG___CT
6. _8203_4_>_FP
___ACGTCT____________AC___CGAG___CT
7. _8203_5_>_FP
___ACGTCT____________AC___CGAG___CT
8. _8203_7_>_FP
___ACGTCT____________AC___CGAG___CT
9. _Cabiria
___ACGTCT____________AC___CGAG___CT
10. _RUQ_56
___AC___CT___AG______AC___CGAG______
11. _RUQ_56
ATAC____________CTAG___GG___AG______
12. _RUQ_56
___ACACAGATAG______AC___CGAGGGAG
13. _RUQ_56
___ACGTCT___AG______AC___CGAG___CT
14. _RUQ_56
___ACGTCT____________AC___CGAG___CT
15. _KW_293_I-043
___ACGTCT____________AC___CGAG___CT
16. _C0245
___ACGTCT____________AC___CGAG___CT
17. _MITC-000064
___ACACAGATAG______AC___CGAGGGAG
18. _UF_676_Fld#_180_Plt#_2
___ACACAGATAG______AC___CGAGGGAG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-08-080-2-03
______ATAG___AGATCTAG___GGATCGAG
2. _GC-08-080-2-03
______ATAG___AGATCTAG___GGATCGAG
3. _GC-08-080-2-03
______ATAG___AGATCTAG___GGATCGAG
4. _GC-08-080-2-03
______ATAG___AGATCTAG___GGATCGAG
5. _8203_3_>_FP
__________________AT_________GG______AG
6. _8203_4_>_FP
__________________AT_________GG______AG
7. _8203_5_>_FP
__________________AT_________GG______AG
8. _8203_7_>_FP
__________________AT_________GG______AG
9. _Cabiria
__________________AT_________GG______AG
10. _RUQ_56
_______________AGATCT____________CG___
11. _RUQ_56
TTAC___AGAC____________CC____________
12. _RUQ_56
______ATAG___AGATAGAG___GGATCG___
13. _RUQ_56
_________AG___AGAT_______________CGAG
14. _RUQ_56
__________________AT_________GG______AG
15. _KW_293_I-043
__________________AT_________GG______AG
16. _C0245
__________________AT_________GG______AG
17. _MITC-000064
______ATAG___AGATAGAG___GGATCG___
18. _UF_676_Fld#_180_Plt#_2
______ATAG___AGATAGAG___GGATCG___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-08-080-2-03
______CC___CCCT___GGGTAACC___ACCC
2. _GC-08-080-2-03
______CC___CCCT___GGGTAACC___ACCC
3. _GC-08-080-2-03
______CC___CCCT___GGGTAACC___ACCC
4. _GC-08-080-2-03
______CC___CCCT___GGGTAACC___ACCC
5. _8203_3_>_FP
____________CCCT______GT___CC___AC___
6. _8203_4_>_FP
____________CCCT______GT___CC___AC___
7. _8203_5_>_FP
____________CCCT______GT___CC___AC___
8. _8203_7_>_FP
____________CCCT______GT___CC___AC___
9. _Cabiria
____________CCCT______GT___CC___AC___
10. _RUQ_56
______________________________CC___ACCC
11. _RUQ_56
___AC___CTAC___AG_________CCATACCC
12. _RUQ_56
AG___CC___CC______GGACAACC___ACGG
13. _RUQ_56
____________CCCT______GT___CC___AACC
14. _RUQ_56
____________CCCT______GT___CC___AC___
15. _KW_293_I-043
____________CCCT______GT___CC___AC___
16. _C0245
____________CCCT______GT___CC___AC___
17. _MITC-000064
AG___CC___CC______GGACAACC___ACGG
18. _UF_676_Fld#_180_Plt#_2
AG___CC___CC______GGACAACC___ACGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-08-080-2-03
AGCT_________GGAG___AGCTCTGTAG___
2. _GC-08-080-2-03
AGCT_________GGAG___AGCTCTGTAG___
3. _GC-08-080-2-03
AGCT_________GGAG___AGCTCTGTAG___
4. _GC-08-080-2-03
AGCT_________GGAG___AGCTCTGTAG___
5. _8203_3_>_FP
___CT_________GG_______________GT______
6. _8203_4_>_FP
___CT_________GG_______________GT______
7. _8203_5_>_FP
___CT_________GG_______________GT______
8. _8203_7_>_FP
___CT_________GG_______________GT______
9. _Cabiria
___CT_________AG_______________GT______
10. _RUQ_56
AG_______________________________________
11. _RUQ_56
______TTAGCGAG___CG______CTGTAGCT
12. _RUQ_56
___AG____________AG___AG______ACAG___
13. _RUQ_56
___CT________________________CTGTAG___
14. _RUQ_56
___CT_________AG_______________GT______
15. _KW_293_I-043
___CT_________AG_______________GT______
16. _C0245
___CT_________AG_______________GT______
17. _MITC-000064
___AG____________AG___AG______ACAG___
18. _UF_676_Fld#_180_Plt#_2
___AG____________AG___AG______ACAG___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-08-080-2-03
GTGTGT___AC___GGAACGCGCCCCAGTT
2. _GC-08-080-2-03
GTGTGT___AC___GGAACGCGCCCCAGTT
3. _GC-08-080-2-03
GTGTGT___AC___GGAACGCGCCCCAGTT
4. _GC-08-080-2-03
GTGTGT___AC___GGAACGCGCCCCAGTT
5. _8203_3_>_FP
________________________CG___CC______TT
6. _8203_4_>_FP
________________________CG___CC______TT
7. _8203_5_>_FP
________________________CG___CC______TT
8. _8203_7_>_FP
________________________CG___CC______TT
9. _Cabiria
________________________CG___CC______TT
10. _RUQ_56
GT__________________AGCGCGCC_________
11. _RUQ_56
_________CTACAATT___CG_________AG___
12. _RUQ_56
ACACAC___AC___CCAGCG___GGGGAGAA
13. _RUQ_56
______GT___AC_________CGCGCC_________
14. _RUQ_56
________________________CG___CC______TT
15. _KW_293_I-043
________________________CG___CC______TT
16. _C0245
________________________CG___CC______TT
17. _MITC-000064
ACACAC___AC___CCAGCG___GGGGAGAA
18. _UF_676_Fld#_180_Plt#_2
ACACAC___AC___CCAGCG___GGGGAGAA
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1. _GC-08-080-2-03
GGCT___AACTAGCT______CTCC___CTAA
2. _GC-08-080-2-03
GGCT___AACTAGCT______CTCC___CTAA
3. _GC-08-080-2-03
GGCT___AACTAGCT______CTCC___CTAA
4. _GC-08-080-2-03
GGCT___AACTAGCT______CTCC___CTAA
5. _8203_3_>_FP
GG______AACTAG__________________CTAA
6. _8203_4_>_FP
GG______AACTAG__________________CTAA
7. _8203_5_>_FP
GG______AACTAG__________________CTAA
8. _8203_7_>_FP
GG______AACTAG__________________CTAA
9. _Cabiria
GG______AACTAG__________________CTAA
10. _RUQ_56
____________CT_______________CC___CT___
11. _RUQ_56
______CG______AGCTTTAA______CC___AA
12. _RUQ_56
GGAG___AAAGAG_________AG______AGAA
13. _RUQ_56
_______________AGCC_______________CT___
14. _RUQ_56
GG______AACTAG__________________CTAA
15. _KW_293_I-043
GG______AACTAG__________________CTAA
16. _C0245
GG______AACTAG__________________CTAA
17. _MITC-000064
GGAG___AAAGAG_________AG______AGAA
18. _UF_676_Fld#_180_Plt#_2
GGAG___AAAGAG_________AG______AGAA
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1. _GC-08-080-2-03
GTAACCAG___ATCTTTTTCTGT_________
2. _GC-08-080-2-03
GTAACCAG___ATCTTTTTCTGT_________
3. _GC-08-080-2-03
GTAACCAG___ATCTTTTTCTGT_________
4. _GC-08-080-2-03
GTAACCAG___ATCTTTTTCTGT_________
5. _8203_3_>_FP
___AA____________CT______CT____________
6. _8203_4_>_FP
___AA____________CT______CT____________
7. _8203_5_>_FP
___AA____________CT______CT____________
8. _8203_7_>_FP
___AA____________CT______CT____________
9. _Cabiria
___AA____________CT______CT____________
10. _RUQ_56
_________AG___AT________________________
11. _RUQ_56
____________TT___CT____________GTACCC
12. _RUQ_56
ACAAGGAG_________AAAA___AC_________
13. _RUQ_56
GT______AG___AT________________________
14. _RUQ_56
___AA____________CT______CT____________
15. _KW_293_I-043
___AA____________CT______CT____________
16. _C0245
___AA____________CT______CT____________
17. _MITC-000064
ACAAGGAG_________AAAA___AC_________
18. _UF_676_Fld#_180_Plt#_2
ACAAGGAG_________AAAA___AC_________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1. _GC-08-080-2-03
CCGTCC______TTAAGG______TTCTCTCG
2. _GC-08-080-2-03
CCGTCC______TTAAGG______TTCTCTCG
3. _GC-08-080-2-03
CCGTCC______TTAAGG______TTCTCTCG
4. _GC-08-080-2-03
CCGTCC______TTAAGG______TTCTCTCG
5. _8203_3_>_FP
___GTCC_________AA_________TT___CTCG
6. _8203_4_>_FP
___GTCC_________AA_________TT___CTCG
7. _8203_5_>_FP
___GTCC_________AA_________TT___CTCG
8. _8203_7_>_FP
___GTCC_________AA_________TT___CTCG
9. _Cabiria
___GTCC_________AA_________TT___CTCG
10. _RUQ_56
_________________________________CT___CG
11. _RUQ_56
___GT___GGTT_________GGGG_________CG
12. _RUQ_56
___AAGG______AGAAGG______AAAGAGCG
13. _RUQ_56
___GT_________CT_______________CTCTCG
14. _RUQ_56
___GTCC_________AA_________TT___CTCG
15. _KW_293_I-043
___GTCC_________AA_________TT___CTGG
16. _C0245
___GTCC_________AA_________TT___CTCG
17. _MITC-000064
___AAGG______AGAAGG______AAAGAGCG
18. _UF_676_Fld#_180_Plt#_2
___AAGG______AGAAGG______AAAGAGCG
 127 128 129 130 131 132 133 134 135      
1. _GC-08-080-2-03
AGCT______ACAGACAGAAX_XX_XX_XX_XX_X
2. _GC-08-080-2-03
AGCT______ACAGACAGAAX_XX_XX_XX_XX_X
3. _GC-08-080-2-03
AGCT______AC___ACAGAAX_XX_XX_XX_XX_X
4. _GC-08-080-2-03
AGCT______ACAGACAGAAX_XX_XX_XX_XX_X
5. _8203_3_>_FP
AGCT_____________________X_XX_XX_XX_XX_X
6. _8203_4_>_FP
AGCT_____________________X_XX_XX_XX_XX_X
7. _8203_5_>_FP
AGCT_____________________X_XX_XX_XX_XX_X
8. _8203_7_>_FP
AGCT_____________________X_XX_XX_XX_XX_X
9. _Cabiria
AGCT_____________________X_XX_XX_XX_XX_X
10. _RUQ_56
___________________________X_XX_XX_XX_XX_X
11. _RUQ_56
______CTAT_______________X_XX_XX_XX_XX_X
12. _RUQ_56
AGAG______AC___ACAGAAX_XX_XX_XX_XX_X
13. _RUQ_56
AG________________________X_XX_XX_XX_XX_X
14. _RUQ_56
AGCT_____________________X_XX_XX_XX_XX_X
15. _KW_293_I-043
AGCT_____________________X_XX_XX_XX_XX_X
16. _C0245
AGCT_____________________X_XX_XX_XX_XX_X
17. _MITC-000064
AGAG______AC___ACAGAAX_XX_XX_XX_XX_X
18. _UF_676_Fld#_180_Plt#_2
AGAG______AC___ACAGAAX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._UF_676 GC-08-080-2-03
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018
2._UF_676 GC-08-080-2-03
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018
3._UF_676 GC-08-080-2-03
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018
4._UF_676 GC-08-080-2-03
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018
5._UF_676
Location: 8203 3 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
6._UF_676
Location: 8203 4 > FP
 Dapeng Zhang, 2016
7._UF_676
Location: 8203 5 > FP
 Dapeng Zhang, 2016
8._UF_676
Location: 8203 7 > FP
 Dapeng Zhang, 2016

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

9._UF_676
Location: Cabiria
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

10._UF_676 RUQ 56
 Jocelyn De Wever et al., 2019
11._UF_676 RUQ 56
 Lambert Motilal, 2023
12._UF_676 RUQ 56
Notes: Reading_Collection
 Mars, 2018
13._UF_676 RUQ 56
 Dapeng Zhang, 2014
14._UF_676 RUQ 56
 Dapeng Zhang, 2016

Indonesian Coffee and Cocoa Research Institute (ICCRI) Indonesia

15._UF_676
Location: KW 293 I-043
 Dapeng Zhang, 2016

Malaysian Cocoa Board (MCB) Malaysia

16._UF_676
Location: C0245
 Dapeng Zhang, 2016

USDA-SHRS United States of America

17._UF_676 MITC-000064
 Mars, 2018

USDA-TARS United States of America

18._UF_676 UF 676_Fld#_180_Plt#_2
Location: Field: 180, Tree: 2
 Mars, 2018

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1237 113TcSNP1242 114TcSNP1253 115TcSNP1270
116TcSNP1275 117TcSNP1293 118TcSNP1309 119TcSNP1350 120TcSNP1383
121TcSNP1401 122TcSNP1404 123TcSNP1414 124TcSNP1439 125TcSNP1442
126TcSNP1458 127TcSNP1484 128TcSNP1520 129TcSNP1524 130TcSNP1527
131Tcm001s00947643 132Tcm002s20575712 133Tcm003s01336581 134Tcm003s07402719 135Tcm006s26664133