SNP Profiles of UF 667   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._UF 667___
______GGGGAT___AG______CTCTACCT___
2._UF 667___
______GGGGAT___AG______CTCTACCT___
3._UF 667___
______GGGGAT___AG______CTCTACCT___
4._UF 667___
______GGGGAT___AG______CTCTACCT___
5._UF 667___
______GGGGAT___AG______CTCTACCT___
6._UF 667___
______GGGGAT___AG______CTCTACCT___
7._UF 667___
______GGGGAT___AG______CTCTACCT___
8._UF 667___
______GGCCAT___AG______AGAGACAG___
9._UF 667___
______GG___AT___________________________
10._UF 667___
______GG___AT___________________________
11._UF 667___
______GG___AT___________________________
12._UF 667___
______GG___AT___________________________
13._UF 667___
______GG___AT___________________________
14._UF 667___
______GG___AT___________________________
15._UF 667___
______GG___AT___________________________
16._UF 667___
______GG___AT___________________________
17._UF 667___
TTAC_________CT___CCTT____________GT
18._UF 667___
______GGCCAT___AG______AGAGACAG___
19._UF 667___
______________________________CTAC______
20._UF 667___
______GG___AT___________________________
21._UF 667___
______GG___AT___________________________
22._UF 667___
______GG___AT___________________________
23._UF 667___
______GG___AT___________________________
24._UF 667___
______GGCCAT___AG______AGAGACAA___
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._UF 667___
___ACGTCTATAG______AC___CGAGGGCT
2._UF 667___
___ACGTCTATAG______AC___CGAGGGCT
3._UF 667___
___ACGTCTATAG______AC___CGAGGGCT
4._UF 667___
___ACGTCTATAG______AC___CGAGGGCT
5._UF 667___
___ACGTCTATAG______AC___CGAGGGCT
6._UF 667___
___ACGTCTATAG______AC___CGAGGGCT
7._UF 667___
___ACGTCTATAG______AC______AGGGCT
8._UF 667___
___ACACAGATAG______AC___CGAGGGAG
9._UF 667___
___ACGTCT____________AC___CGAG___CT
10._UF 667___
___ACGTCT____________AC___CGAG___CT
11._UF 667___
___ACGTCT____________AC___CGAG___CT
12._UF 667___
___ACGTCT____________AC___CGAG___CT
13._UF 667___
___ACGTCT____________AC___CGAG___CT
14._UF 667___
___ACGTCT____________AC______AG___CT
15._UF 667___
___ACGTCT____________AC___CGAG___CT
16._UF 667___
___ACGTCT____________AC___CGAG___CT
17._UF 667___
ATAC____________CTAG___GG___AG______
18._UF 667___
___ACACAGATAG______AC___CGAGGGAG
19._UF 667___
___ACGTCT___AG______AC___CGAG___CT
20._UF 667___
___ACGTCT____________AC___CGAG___CT
21._UF 667___
___ACGTCT____________AA___CCAG___CC
22._UF 667___
___ACGTCT____________AC___CGAG___CT
23._UF 667___
___ACGTCT____________AC___GGAG___CT
24._UF 667___
___CCACAAAAAG______AA___GGAAGGAG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._UF 667___
______ATAG___AGATCTAG___GGATCGAG
2._UF 667___
______ATAG___AGATCTAG___GGATCGAG
3._UF 667___
______ATAG___AGATCTAG___GGATCGAG
4._UF 667___
______ATAG___AGATCTAG___GGATCGAG
5._UF 667___
______ATAG___AGATCTAG___GGATCGAG
6._UF 667___
______ATAG___AGATCTAG___GGATCGAG
7._UF 667___
______ATAG___AGATCTAG___GGATCGAG
8._UF 667___
______ATAG___AGATAGAG___GGATCG___
9._UF 667___
__________________AT_________GG______AG
10._UF 667___
__________________AT_________GG______AG
11._UF 667___
__________________AT_________GG______AG
12._UF 667___
__________________AT_________GG______AG
13._UF 667___
__________________AT_________GG______AG
14._UF 667___
__________________AT_________GG______AG
15._UF 667___
__________________AT_________GG______AG
16._UF 667___
__________________AT_________GG______AG
17._UF 667___
TTAC___AGAC____________CC____________
18._UF 667___
______ATAG___AGATAGAG___GGATCG___
19._UF 667___
_________AG___AGAT_______________CGAG
20._UF 667___
__________________AT_________GG______AG
21._UF 667___
__________________AA_________GG______AG
22._UF 667___
__________________AT_________GG______AG
23._UF 667___
__________________AT_________GG______AG
24._UF 667___
______TTAA___GGATAGGG___GGATCG___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._UF 667___
______CC___CCCT___GGGTAACC___ACCC
2._UF 667___
______CC___CCCT___GGGTAACC___ACCC
3._UF 667___
______CC___CCCT___GGGTAACC___ACCC
4._UF 667___
______CC___CCCT___GGGTAACC___ACCC
5._UF 667___
______CC___CCCT___GGGTAACC___ACCC
6._UF 667___
______CC___CCCT___GGGTAACC___ACCC
7._UF 667___
______CC___CCCT___GGGTAACC___ACCC
8._UF 667___
AG___CC___CC______GGACAACC___ACGG
9._UF 667___
____________CCCT______GT___CC___AC___
10._UF 667___
____________CCCT______GT___CC___AC___
11._UF 667___
____________CCCT______GT___CC___AC___
12._UF 667___
____________CCCT______GT___CC___AC___
13._UF 667___
____________CCCT______GT___CC___AC___
14._UF 667___
____________CCCT______GT___CC___AC___
15._UF 667___
____________CCCT______GT___CC___AC___
16._UF 667___
____________CCCT______GT___CC___AC___
17._UF 667___
___AC___CTAC___AG_________CCATACCC
18._UF 667___
AG___CC___CC______GGACAACC___ACGG
19._UF 667___
____________CCCT______GT___CC___AACC
20._UF 667___
____________CCCT______GT___CC___AC___
21._UF 667___
____________AACC______GG___CG___CC___
22._UF 667___
____________CCCT______GT___CC___AC___
23._UF 667___
____________CCCT______GT___CC___AC___
24._UF 667___
AG___AC___AC______AGACAGCG___ACGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._UF 667___
AGCT_________GGAG___AGCTCTGTAG___
2._UF 667___
AGCT_________GGAG___AGCTCTGTAG___
3._UF 667___
AGCT_________GGAG___AGCTCTGTAG___
4._UF 667___
AGCT_________GGAG___AGCTCTGTAG___
5._UF 667___
AGCT_________GGAG______CTCTGTAG___
6._UF 667___
AGCT_________GGAG___AGCTCTGTAG___
7._UF 667___
AGCT_________GGAG___AGCTCTGTAG___
8._UF 667___
___AG____________AG___AG______ACAG___
9._UF 667___
___CT_________GG_______________GT______
10._UF 667___
___CT_________GG_______________GT______
11._UF 667___
___CT_________GG_______________GT______
12._UF 667___
___CT_________GG_______________GT______
13._UF 667___
___CT_________GG_______________GT______
14._UF 667___
___CT_________GG_______________GT______
15._UF 667___
___CT_________GG_______________GT______
16._UF 667___
___CT_________AG_______________GT______
17._UF 667___
______TTAGCCAG___CG______CTGTAGCT
18._UF 667___
___AG____________AG___AG______ACAG___
19._UF 667___
___CT________________________CTGTAG___
20._UF 667___
___CT_________AG_______________GT______
21._UF 667___
___TT_________AA_______________GG______
22._UF 667___
___CT_________AG_______________GT______
23._UF 667___
___CT_________AG_______________GT______
24._UF 667___
___AA____________AG___AA______CCGG___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._UF 667___
GTGTGT___AC___GGAACGCGCCCCAGTT
2._UF 667___
GTGTGT___AC___GGAACGCGCCCC___TT
3._UF 667___
GTGTGT___AC___GGAACGCGCCCCAGTT
4._UF 667___
GTGTGT___AC___GGAACGCGCCCCAGTT
5._UF 667___
GTGTGT___AC___GGAACGCGCCCCAGTT
6._UF 667___
GTGTGT___AC___GGAACGCGCCCCAGTT
7._UF 667___
GTGTGT___AC___GGAACGCGCCCCAGTT
8._UF 667___
ACACAC___AC___CCAGCG___GGGGAGAA
9._UF 667___
________________________CG___CC______TT
10._UF 667___
________________________CG___CC______TT
11._UF 667___
________________________CG___CC______TT
12._UF 667___
________________________CG___CC______TT
13._UF 667___
________________________CG___CC______TT
14._UF 667___
________________________CG___CC______TT
15._UF 667___
________________________CG___CC______TT
16._UF 667___
________________________CG___CC______TT
17._UF 667___
_________CTACAATT___CG_________AG___
18._UF 667___
ACACAC___AC___CCAGCG___GGGGAGAA
19._UF 667___
______GT___AC_________CGCGCC_________
20._UF 667___
________________________CG___CC______TT
21._UF 667___
________________________GG___CC______CT
22._UF 667___
________________________CG___CC______TT
23._UF 667___
________________________CG___CC______TT
24._UF 667___
ACACAC___CC___CGGGGG___AGGGGGAG
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1._UF 667___
GGCT___AACTAGCT______CTCC___CTAA
2._UF 667___
GGCT___AACTAGCT______CTCC______AA
3._UF 667___
GGCT___AACTAGCT______CTCC___CTAA
4._UF 667___
GGCT___AACTAGCT______CTCC___CTAA
5._UF 667___
GGCT___AACTAGCT______CTCC______AA
6._UF 667___
GGCT___AACTAGCT______CTCC___CTAA
7._UF 667___
GGCT___AACTAGCT______CTCC___CTAA
8._UF 667___
GGAG___AAAGAG_________AG______AGAA
9._UF 667___
GG______AACTAG_____________________AA
10._UF 667___
GG______AACTAG__________________CTAA
11._UF 667___
GG______AACTAG_____________________AA
12._UF 667___
GG______AACTAG__________________CTAA
13._UF 667___
GG______AACTAG__________________CTAA
14._UF 667___
GG______AACTAG__________________CTAA
15._UF 667___
GG______AACTAG__________________CTAA
16._UF 667___
GG______AACTAG__________________CTAA
17._UF 667___
______CG______AGCTTTAA______CC___AA
18._UF 667___
GGAG___AAAGAG_________AG______AGAA
19._UF 667___
_______________AGCC_______________CT___
20._UF 667___
GG______AACTAG__________________CTAA
21._UF 667___
CG______AACCAG__________________CCGG
22._UF 667___
GG______AACTAG__________________CTAA
23._UF 667___
GG______AACTAG__________________CTAA
24._UF 667___
GGAG___ATAAAA_________AG______GGAG
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1._UF 667___
GTAACCAG___ATCTTTTTCTGT_________
2._UF 667___
GTAACCAG___ATCTTTTTCTGT_________
3._UF 667___
GTAACCAG___ATCTTTTTCTGT_________
4._UF 667___
GTAACCAG___ATCTTTTTCTGT_________
5._UF 667___
GTAACCAG___ATCTTTTTCTGT_________
6._UF 667___
GTAACCAG___ATCTTTTTCTGT_________
7._UF 667___
GTAACCAG___ATCTTTTTCTGT_________
8._UF 667___
ACAAGGAG_________AAAA___AC_________
9._UF 667___
___AA____________CT______CT____________
10._UF 667___
___AA____________CT______CT____________
11._UF 667___
___AA____________CT______CT____________
12._UF 667___
___AA____________CT______CT____________
13._UF 667___
___AA____________CT______CT____________
14._UF 667___
___AA____________CT______CT____________
15._UF 667___
___AA____________CT______CT____________
16._UF 667___
___AA____________CT______CT____________
17._UF 667___
____________TT___CT____________GTACCC
18._UF 667___
ACAAGGAG_________AAAA___AC_________
19._UF 667___
GT______AG___AT________________________
20._UF 667___
___AA____________CT______CT____________
21._UF 667___
___AA____________CC______CC____________
22._UF 667___
___AA____________CT______CT____________
23._UF 667___
___AA____________CT______CT____________
24._UF 667___
ACAAGGGG_________AGAG___AA_________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1._UF 667___
CCGTCC______TTAAGG______TTCTCTCG
2._UF 667___
CCGTCC______TTAAGG______TT___CTCG
3._UF 667___
CCGTCC______TTAAGG______TTCTCTCG
4._UF 667___
CCGTCC______TTAAGG______TTCTCTCG
5._UF 667___
CCGTCC______TTAAGG______TTCTCTCG
6._UF 667___
CCGTCC______TTAAGG______TTCTCTCG
7._UF 667___
CCGTCC______TTAAGG______TTCTCTCG
8._UF 667___
___AAGG______AGAAGG______AAAGAGCG
9._UF 667___
___GTCC_________AA_________TT___CTCG
10._UF 667___
___GTCC_________AA_________TT___CTCG
11._UF 667___
___GTCC_________AA_________TT___CTCG
12._UF 667___
___GTCC_________AA_________TT___CTCG
13._UF 667___
___GTCC_________AA_________TT___CTCG
14._UF 667___
___GTCC_________AA_________TT___CTCG
15._UF 667___
___GTCC_________AA_________TT___CTCG
16._UF 667___
___GTCC_________AA_________TT___CTCG
17._UF 667___
___GT___GGTT_________GGGG_________CG
18._UF 667___
___AAGG______AGAAGG______AAAGAGCG
19._UF 667___
___GT_________CT_______________CTCTCG
20._UF 667___
___GTCC_________AA_________TT___CTCG
21._UF 667___
___TTTT_________CC_________TT___CTCG
22._UF 667___
___GTCC_________AA_________TT___CTCG
23._UF 667___
___GTCC_________AA_________TT___CTCG
24._UF 667___
___AAAG______GGACGG______AGAGAGCC
 127 128 129 130 131 132 133 134 135      
1._UF 667___
AGCT______ACAGACAGAAX_XX_XX_XX_XX_X
2._UF 667___
AGCT______ACAGACAGAAX_XX_XX_XX_XX_X
3._UF 667___
AGCT______ACAGACAGAAX_XX_XX_XX_XX_X
4._UF 667___
AGCT______ACAGACAGAAX_XX_XX_XX_XX_X
5._UF 667___
AGCT______ACAGACAGAAX_XX_XX_XX_XX_X
6._UF 667___
AGCT______ACAGACAGAAX_XX_XX_XX_XX_X
7._UF 667___
AGCT______ACAGACAGAAX_XX_XX_XX_XX_X
8._UF 667___
AGAG______AC___ACAGAAX_XX_XX_XX_XX_X
9._UF 667___
AGCT_____________________X_XX_XX_XX_XX_X
10._UF 667___
AGCT_____________________X_XX_XX_XX_XX_X
11._UF 667___
AGCT_____________________X_XX_XX_XX_XX_X
12._UF 667___
AGCT_____________________X_XX_XX_XX_XX_X
13._UF 667___
AGCT_____________________X_XX_XX_XX_XX_X
14._UF 667___
AGCT_____________________X_XX_XX_XX_XX_X
15._UF 667___
AGCT_____________________X_XX_XX_XX_XX_X
16._UF 667___
AGCT_____________________X_XX_XX_XX_XX_X
17._UF 667___
______CTAT_______________X_XX_XX_XX_XX_X
18._UF 667___
AGAG______AC___ACAGAAX_XX_XX_XX_XX_X
19._UF 667___
AG________________________X_XX_XX_XX_XX_X
20._UF 667___
AGCT_____________________X_XX_XX_XX_XX_X
21._UF 667___
GGCC_____________________X_XX_XX_XX_XX_X
22._UF 667___
AGCT_____________________X_XX_XX_XX_XX_X
23._UF 667___
AGCT_____________________X_XX_XX_XX_XX_X
24._UF 667___
AGGG______AC___AAAAAAX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._UF_667 GC-01-029-2-06

Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._UF_667 GC-01-029-2-06

Location: Tree: 2
Notes: 2
 Mars, 2018

3._UF_667 GC-01-029-2-06

Location: Tree: 3
Notes: 3
 Mars, 2018

4._UF_667 GC-01-029-2-06

Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

5._UF_667 GC-01-029-2-06

Location: Tree: 7
Notes: 7
 Mars, 2018

6._UF_667 GC-01-029-2-06

Location: Tree: 10
Notes: 10
 Mars, 2018

7._UF_667 GC-01-029-2-06

Location: Tree: 11
Notes: 11 > FP4
 Mars, 2018

8._UF_667 GC-01-29-2-6

Location: Field: 1, Block: 2, Rep: 6, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

9._UF_667

Location: 1206 2
 Dapeng Zhang, 2016

10._UF_667

Location: 1206 3
 Dapeng Zhang, 2016

11._UF_667

Location: 1206 7
 Dapeng Zhang, 2016

12._UF_667

Location: 1206 10
 Dapeng Zhang, 2016

13._UF_667

Location: 1206 1 > FP
 Dapeng Zhang, 2016

14._UF_667

Location: 1206 11 > F
 Dapeng Zhang, 2016

15._UF_667

Location: 1206 5 > FP
 Dapeng Zhang, 2016

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

16._UF_667

Location: Cabiria
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

17._UF_667 RUQ 55

 Lambert Motilal, 2023
Population Assignment: 

18._UF_667 RUQ 55

Notes: Reading_Collection
 Mars, 2018

19._UF_667 RUQ 55

 Dapeng Zhang, 2014

20._UF_667 RUQ 55

 Dapeng Zhang, 2016

Indonesian Coffee and Cocoa Research Institute (ICCRI) Indonesia

21._UF_667

Location: KW 292 I-042
 Dapeng Zhang, 2016

Malaysian Cocoa Board (MCB) Malaysia

22._UF_667

Location: C0244
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

23._UF_667

Location: 6B F466 T2
 Dapeng Zhang, 2016

USDA-TARS United States of America

24._UF_667 UF 667_Fld#_119_Plt#_1

Location: Field: 119, Tree: 1
 Mars, 2018

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1237 113TcSNP1242 114TcSNP1253 115TcSNP1270
116TcSNP1275 117TcSNP1293 118TcSNP1309 119TcSNP1350 120TcSNP1383
121TcSNP1401 122TcSNP1404 123TcSNP1414 124TcSNP1439 125TcSNP1442
126TcSNP1458 127TcSNP1484 128TcSNP1520 129TcSNP1524 130TcSNP1527
131Tcm001s00947643 132Tcm002s20575712 133Tcm003s01336581 134Tcm003s07402719 135Tcm006s26664133