SNP Profiles of UF 273   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _Tree:_Tree-2
______CGCCAA___AA______GGAACCAG___
2. _Field:_La_Montana,_Tree:_1
______CGCCAA___AA______GGAACCAG___
3. _RUQ_1707
CTAA_________CT___CCGG____________GT
4. _RUQ_1707B
CTAA_________CT___CCGG____________GT
5. _RUQ_1707
______CGCCAA___AA______GGAACCAG___
6. _MITC-000717
______GGCCTT___GG______GGAACCAA___
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _Tree:_Tree-2
___CCCCAGTTAG______AC___GGAAGGGG
2. _Field:_La_Montana,_Tree:_1
___CCCCAGTTAG______AC___GGAAGGGG
3. _RUQ_1707
AACC____________TTAA___GT___AA______
4. _RUQ_1707B
AACC____________TTAA___GT___AA______
5. _RUQ_1707
___CCCCAGTTAG______AC___GGAAGGGG
6. _MITC-000717
___CCAAGGTTGG______AA___GGAAGGGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _Tree:_Tree-2
______ATGG___AGTTGGAA___GGAAGGAG
2. _Field:_La_Montana,_Tree:_1
______ATGG___AGTTGGAA___GGAAGGAG
3. _RUQ_1707
CCAA___GGAC____________CC____________
4. _RUQ_1707B
CCAA___GGAC____________CC____________
5. _RUQ_1707
______ATGG___AGTTGGAA___GGAAGGAG
6. _MITC-000717
______TTGG___GGAAAAGG___GGTTGGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _Tree:_Tree-2
___AC___AC___AGACGGCG___CCGGAG___
2. _Field:_La_Montana,_Tree:_1
___AC___AC___AGACGGCG___CCGGAG___
3. _RUQ_1707
AC___CCAAAA_________CGAACCCC___TT
4. _RUQ_1707B
AC___CCAAAA_________CGAACCCC___TT
5. _RUQ_1707
___AC___AC___AGACGGCG___CCGGAG___
6. _MITC-000717
___CC___CC___GGAAAACC___AAAAAA___
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _Tree:_Tree-2
_________AG___AA___CCAG___AAAAAA___
2. _Field:_La_Montana,_Tree:_1
_________AG___AA___CCAG___AAAAAA___
3. _RUQ_1707
AACCAA___CC______GGAGCC_________TT
4. _RUQ_1707B
AACCAA___CC___TTGGAGCC_________TT
5. _RUQ_1707
_________AG___AA___CCAG___AAAAAA___
6. _MITC-000717
_________GG___AA___CCGG___AAAAAA___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _Tree:_Tree-2
CC___GGAACCAGCGAGGGGGGG___ATAA
2. _Field:_La_Montana,_Tree:_1
CC___GGAACCAGCGAGGGGGGG___ATAA
3. _RUQ_1707
CCAACC___GG______AG_________CC______
4. _RUQ_1707B
CCAACC___GG______AG_________CC______
5. _RUQ_1707
CC___GGAACCAGCGAGGGGGGG___ATAA
6. _MITC-000717
AA___CCGGCCGGGGAAAAGGGG___AAAA
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1. _Tree:_Tree-2
AA_________AA___GGGGCCATAGGG______
2. _Field:_La_Montana,_Tree:_1
AA_________AA___GGGGCCATAGGG______
3. _RUQ_1707
AACTCTAA___CT___GG____________TTCT
4. _RUQ_1707B
AACTCTAA___CT___GG____________TTCT
5. _RUQ_1707
AA_________AA___GGGGCCATAGGG______
6. _MITC-000717
GG_________AA___GGAACCAAGGGG______
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1. _Tree:_Tree-2
GGAAAA_________CCAG______AGCCGG___
2. _Field:_La_Montana,_Tree:_1
GGAAAA_________CCAG______AGCCGG___
3. _RUQ_1707
_________GGAACTGG___GGTT_________AG
4. _RUQ_1707B
_________GGAACTGG___GGTT_________AG
5. _RUQ_1707
GGAAAA_________CCAG______AG___GG___
6. _MITC-000717
AAAACC_________AAGG______AAAAGG___
 113 114 115 116 117 118 119 120 121 122 123 124 125  
1. _Tree:_Tree-2
___AGAGAGGGAGAG______ACCCAGACX_X
2. _Field:_La_Montana,_Tree:_1
___AGAGAGGGAGAG______ACCCAGACX_X
3. _RUQ_1707
GG_________CC______TTAT____________X_X
4. _RUQ_1707B
GG_________CC______TTAT____________X_X
5. _RUQ_1707
___AGAGAGGGAGAG______ACCCAGACX_X
6. _MITC-000717
___AAAAGGCCAAAA______CCCCAAAAX_X

 Key

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

1._UF_273
Location: Tree: Tree-2
 Mars, 2018
2._UF_273
Location: Field: La Montana, Tree: 1
 Mars, 2018

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

3._UF_273 RUQ 1707
 Lambert Motilal, 2023
Population Assignment: 
4._UF_273 RUQ 1707B
 Lambert Motilal, 2023
5._UF_273 RUQ 1707
Notes: Reading_Collection
 Mars, 2018

USDA-SHRS United States of America

6._UF_273 MITC-000717
 Mars, 2018

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP497 43TcSNP519 44TcSNP521 45TcSNP522
46TcSNP529 47TcSNP546 48TcSNP547 49TcSNP560 50TcSNP561
51TcSNP577 52TcSNP589 53TcSNP591 54TcSNP602 55TcSNP619
56TcSNP640 57TcSNP642 58TcSNP644 59TcSNP645 60TcSNP653
61TcSNP660 62TcSNP689 63TcSNP702 64TcSNP723 65TcSNP731
66TcSNP739 67TcSNP751 68TcSNP776 69TcSNP799 70TcSNP800
71TcSNP823 72TcSNP835 73TcSNP836 74TcSNP860 75TcSNP872
76TcSNP891 77TcSNP894 78TcSNP899 79TcSNP917 80TcSNP929
81TcSNP944 82TcSNP945 83TcSNP953 84TcSNP994 85TcSNP998
86TcSNP999 87TcSNP1010 88TcSNP1019 89TcSNP1034 90TcSNP1053
91TcSNP1060 92TcSNP1062 93TcSNP1063 94TcSNP1075 95TcSNP1096
96TcSNP1111 97TcSNP1112 98TcSNP1144 99TcSNP1149 100TcSNP1156
101TcSNP1175 102TcSNP1205 103TcSNP1230 104TcSNP1237 105TcSNP1253
106TcSNP1270 107TcSNP1275 108TcSNP1293 109TcSNP1309 110TcSNP1350
111TcSNP1383 112TcSNP1401 113TcSNP1404 114TcSNP1414 115TcSNP1439
116TcSNP1442 117TcSNP1458 118TcSNP1484 119TcSNP1520 120TcSNP1524
121TcSNP1527 122Tcm001s00947643 123Tcm003s01336581 124Tcm003s07402719 125Tcm006s26664133