SNP Profiles of "TSH 565"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-01-005-1-05
______CGGTAA___GG______CTTTACCT___
2. _GC-01-005-1-05
______CGGTAA___GG______CTTTACCT___
3. _GC-01-005-1-05
______CGGTAA___GG______CTTTACCT___
4. _GC-01-005-1-05
______CGGTAA___GG______CTTTACCT___
5. _GC-01-005-1-05
______CGGTAA___GG______CTTTACCT___
6. _GC-01-005-1-05
______CGGTAA___GG______CTTTACCT___
7. _GC-01-005-1-05
______CGGTAA___GG______CTTTACCT___
8. _GC-01-005-1-05
______CGGTAA___GG______CTTTACCT___
9. _GC-01-005-1-05
______CGGTAA___GG______CTTTACCT___
10. _GC-01-005-1-05
______CGGTAA___GG______CTTTACCT___
11. _GC-01-005-1-05
______CGGTAA___GG______CTTTACCT___
12. _Tree:_FP_4
______CGACAA___GG______AGAAACAG___
13. _Tree:_FP_1
______CGACAA___GG______AGAAACAG___
14. _Tree:_FP_2
______CGACAA___GG______AGAAACAG___
15. _RUQ_1741
CTAC_________TT___ACTT____________TT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-01-005-1-05
___ACGTCTATAG______AC___CGAAAGCC
2. _GC-01-005-1-05
___ACGTCTATAG______AC___CGAAAGCC
3. _GC-01-005-1-05
___ACGTCTATAG______AC___CGAAAGCC
4. _GC-01-005-1-05
___ACGTCTATAG______AC___CGAAAGCC
5. _GC-01-005-1-05
___ACGTCTATAG______AC___CGAAAGCC
6. _GC-01-005-1-05
___ACGTCTATAG______AC___CGAAAGCC
7. _GC-01-005-1-05
___ACGTCTATAG______AC___CGAAAGCC
8. _GC-01-005-1-05
___ACGTCTATAG______AC___CGAAAGCC
9. _GC-01-005-1-05
___ACGTCTATAG______AC___CGAAAGCC
10. _GC-01-005-1-05
___ACGTCTATAG______AC___CGAAAGCC
11. _GC-01-005-1-05
___ACGTCTATAG______AC___CGAAAGCC
12. _Tree:_FP_4
___ACACAGATAG______AC___CGAAAGGG
13. _Tree:_FP_1
___ACACAGATAG______AC___CGAAAGGG
14. _Tree:_FP_2
___ACACAGATAG______AC___CGAAAGGG
15. _RUQ_1741
ATAC____________CTAG___GT___AA______
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-01-005-1-05
______ATAG___AGAACTAG___GGAAGGAG
2. _GC-01-005-1-05
______ATAG___AGAACTAG___GGAAGGAG
3. _GC-01-005-1-05
______ATAG___AGAACTAG___GGAAGGAG
4. _GC-01-005-1-05
______ATAG___AGAACTAG___GGAAGGAG
5. _GC-01-005-1-05
______ATAG___AGAACTAG___GGAAGGAG
6. _GC-01-005-1-05
______ATAG___AGAACTAG___GGAAGGAG
7. _GC-01-005-1-05
______ATAG___AGAACT______GGAAGGAG
8. _GC-01-005-1-05
______ATAG___AGAACTAG___GGAAGGAG
9. _GC-01-005-1-05
______ATAG___AGAACTAG___GGAAGGAG
10. _GC-01-005-1-05
______ATAG___AGAACTAG___GGAAGGAG
11. _GC-01-005-1-05
______ATAG___AGAACTAG___GGAAGGAG
12. _Tree:_FP_4
______ATAG___AGAAAGAG___GGAACC___
13. _Tree:_FP_1
______ATAG___AGAAAGAG___GGAACC___
14. _Tree:_FP_2
______ATAG___AGAAAGAG___GGAACC___
15. _RUQ_1741
TTAA___AGAC____________CC____________
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-01-005-1-05
______AC___ACCT___AGGTAGCG___CCCT
2. _GC-01-005-1-05
______AC___ACCT___AGGTAGCG___CCCT
3. _GC-01-005-1-05
______AC___ACCT___AGGTAGCG___CCCT
4. _GC-01-005-1-05
______AC___ACCT___AGGTAGCG___CCCT
5. _GC-01-005-1-05
______AC___ACCT___AGGTAGCG___CCCT
6. _GC-01-005-1-05
______AC___ACCT___AGGTAGCG___CCCT
7. _GC-01-005-1-05
______AC___ACCT___AGGTAGCG___CCCT
8. _GC-01-005-1-05
______AC___ACCT___AGGTAGCG___CCCT
9. _GC-01-005-1-05
______AC___ACCT___AGGTAGCG___CCCT
10. _GC-01-005-1-05
______AC___ACCT___AGGTAGCG___CCCT
11. _GC-01-005-1-05
______AC___ACCT___AGGTAGCG___CCCT
12. _Tree:_FP_4
AG___AC___AC______AGACAGCG___CCAG
13. _Tree:_FP_1
AG___AC___AC______AGACAGCG___CCAG
14. _Tree:_FP_2
AG___AC___AC______AGACAGCG___CCAG
15. _RUQ_1741
___AA___CCAA___AA_________CGAACCCT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-01-005-1-05
AGTT_________AGAA______CCCTGTAG___
2. _GC-01-005-1-05
AGTT_________AGAA___AACCCTGTAG___
3. _GC-01-005-1-05
AGTT_________AGAA___AACCCTGTAG___
4. _GC-01-005-1-05
AGTT_________AGAA___AACCCTGTAG___
5. _GC-01-005-1-05
AGTT_________AGAA___AACCCTGTAG___
6. _GC-01-005-1-05
AGTT_________AGAA___AACCCTGTAG___
7. _GC-01-005-1-05
AGTT_________AGAA___AACCCTGTAG___
8. _GC-01-005-1-05
AGTT_________AGAA___AACCCTGTAG___
9. _GC-01-005-1-05
AGTT_________AGAA___AACCCTGTAG___
10. _GC-01-005-1-05
AGTT_________AGAA___AACCCTGTAG___
11. _GC-01-005-1-05
AGTT_________AGAA___AACCCTGTAG___
12. _Tree:_FP_4
___AA____________AG___AA______ACAG___
13. _Tree:_FP_1
___AA____________AG___AA______ACAG___
14. _Tree:_FP_2
___AA____________AG___AA______ACAG___
15. _RUQ_1741
______CTAGCGGG___CG______CCGTAGCT
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-01-005-1-05
GTGTGT___CC___CGAACCCGCTCCAGCT
2. _GC-01-005-1-05
GTGTGT___CC___CGAACCCGCTCCAGCT
3. _GC-01-005-1-05
GTGTGT___CC___CGAACCCGCTCCAGCT
4. _GC-01-005-1-05
GTGTGT___CC___CGAACCCGCTCCAGCT
5. _GC-01-005-1-05
GTGTGT___CC___CGAACCCGCTCCAGCT
6. _GC-01-005-1-05
GTGTGT___CC___CGAACCCGCTCCAGCT
7. _GC-01-005-1-05
GTGTGT___CC___CGAACCCGCTCCAGCT
8. _GC-01-005-1-05
GTGTGT___CC___CGAACCCGCTCCAGCT
9. _GC-01-005-1-05
GTGTGT___CC___CGAACCCGCTCCAGCT
10. _GC-01-005-1-05
GTGTGT___CC___CGAACCCGCTCCAGCT
11. _GC-01-005-1-05
GTGTGT___CC___CGAACCCGCTCCAGCT
12. _Tree:_FP_4
ACACAC___CC___CGAAGG___AGGGAGAG
13. _Tree:_FP_1
ACACAC___CC___CGAAGG___AGGGAGAG
14. _Tree:_FP_2
ACACAC___CC___CGAAGG___AGGGAGAG
15. _RUQ_1741
_________TTCCATCT___CC_________AG___
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1. _GC-01-005-1-05
CGCT___ATCTAACT______CTCG___TTAG
2. _GC-01-005-1-05
CGCT___ATCTAACT______CTCG___TTAG
3. _GC-01-005-1-05
CGCT___ATCTAACT______CTCG___TTAG
4. _GC-01-005-1-05
CGCT___ATCTAACT______CTCG___TTAG
5. _GC-01-005-1-05
CGCT___ATCTAACT______CTCG___TTAG
6. _GC-01-005-1-05
CGCT___ATCTAACT______CTCG___TTAG
7. _GC-01-005-1-05
CGCT___ATCTAACT______CTCG___TTAG
8. _GC-01-005-1-05
CGCT___ATCTAACT______CTCG___TTAG
9. _GC-01-005-1-05
CGCT___ATCTAACT______CTCG___TTAG
10. _GC-01-005-1-05
CGCT___ATCTAACT______CTCG___TTAG
11. _GC-01-005-1-05
CGCT___ATCTAACT______CTCG___TTAG
12. _Tree:_FP_4
CGAG___ATAGAA_________AG______AAAG
13. _Tree:_FP_1
CGAG___ATAGAA_________AG______AAAG
14. _Tree:_FP_2
CGAG___ATAGAA_________AG______AAAG
15. _RUQ_1741
______GG______AACTCTAT______CT___AG
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1. _GC-01-005-1-05
GGAACTAG___ATCTCTCTTTGT_________
2. _GC-01-005-1-05
GGAACTAG___ATCTCTCTTTGT_________
3. _GC-01-005-1-05
GGAACTAG___ATCTCTCTTTGT_________
4. _GC-01-005-1-05
GGAACTAG___ATCTCTCTTTGT_________
5. _GC-01-005-1-05
GGAACTAG___ATCTCTCTTTGT_________
6. _GC-01-005-1-05
GGAACTAG___ATCTCTCTTTGT_________
7. _GC-01-005-1-05
GGAACTAG___ATCTCTCTTTGT_________
8. _GC-01-005-1-05
GGAACTAG___ATCTCTCTTTGT_________
9. _GC-01-005-1-05
GGAACTAG___ATCTCTCTTTGT_________
10. _GC-01-005-1-05
GGAACTAG___ATCTCTCTTTGT_________
11. _GC-01-005-1-05
GGAACTAG___ATCTCTCTTTGT_________
12. _Tree:_FP_4
CCAAAGAG_________AGAG___AC_________
13. _Tree:_FP_1
CCAAAGAG_________AGAG___AC_________
14. _Tree:_FP_2
CCAAAGAG_________AGAG___AC_________
15. _RUQ_1741
____________CT___CT____________GTAACT
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1. _GC-01-005-1-05
ACGTCC______TTACAG______CTCTCCCG
2. _GC-01-005-1-05
ACGTCC______TTACAG______CTCTCCCG
3. _GC-01-005-1-05
ACGTCC______TTACAG______CTCTCCCG
4. _GC-01-005-1-05
ACGTCC______TTACAG______CTCTCCCG
5. _GC-01-005-1-05
ACGTCC______TTACAG______CTCTCCCG
6. _GC-01-005-1-05
ACGTCC______TTACAG______CTCTCCCG
7. _GC-01-005-1-05
ACGTCC______TTACAG______CTCTCCCG
8. _GC-01-005-1-05
ACGTCC______TTACAG______CTCTCCCG
9. _GC-01-005-1-05
ACGTCC______TTACAG______CTCTCCCG
10. _GC-01-005-1-05
ACGTCC______TTACAG______CTCTCCCG
11. _GC-01-005-1-05
ACGTCC______TTACAG______CTCTCCCG
12. _Tree:_FP_4
___ACGG______AGACAG______AGAGGGCG
13. _Tree:_FP_1
___ACGG______AGACAG______AGAGGGCG
14. _Tree:_FP_2
___ACGG______AGACAG______AGAGGGCG
15. _RUQ_1741
___GT___GTTT_________AGAG_________CG
 127 128 129 130 131 132 133 134 135      
1. _GC-01-005-1-05
AACT______CCAAACGGACX_XX_XX_XX_XX_X
2. _GC-01-005-1-05
AACT______CCAAACGGACX_XX_XX_XX_XX_X
3. _GC-01-005-1-05
AACT______CCAAACGGACX_XX_XX_XX_XX_X
4. _GC-01-005-1-05
AACT______CCAAACGGACX_XX_XX_XX_XX_X
5. _GC-01-005-1-05
AACT______CCAAACGGACX_XX_XX_XX_XX_X
6. _GC-01-005-1-05
AACT______CCAAACGGACX_XX_XX_XX_XX_X
7. _GC-01-005-1-05
AACT______CCAAACGGACX_XX_XX_XX_XX_X
8. _GC-01-005-1-05
AACT______CCAAACGGACX_XX_XX_XX_XX_X
9. _GC-01-005-1-05
AACT______CCAAACGGACX_XX_XX_XX_XX_X
10. _GC-01-005-1-05
AACT______CCAAACGGACX_XX_XX_XX_XX_X
11. _GC-01-005-1-05
AACT______CCAAACGGACX_XX_XX_XX_XX_X
12. _Tree:_FP_4
AAAG______CC___ACGGACX_XX_XX_XX_XX_X
13. _Tree:_FP_1
AAAG______CC___ACGGACX_XX_XX_XX_XX_X
14. _Tree:_FP_2
AAAG______CC___ACGGACX_XX_XX_XX_XX_X
15. _RUQ_1741
______CTAA_______________X_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._TSH_565 GC-01-005-1-05
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018
2._TSH_565 GC-01-005-1-05
Location: Tree: 2
Notes: 2
 Mars, 2018
3._TSH_565 GC-01-005-1-05
Location: Tree: 3
Notes: 3
 Mars, 2018
4._TSH_565 GC-01-005-1-05
Location: Tree: 4
Notes: 4
 Mars, 2018
5._TSH_565 GC-01-005-1-05
Location: Tree: 6
Notes: 6 > FP3
 Mars, 2018
6._TSH_565 GC-01-005-1-05
Location: Tree: 7
Notes: 7
 Mars, 2018
7._TSH_565 GC-01-005-1-05
Location: Tree: 8
Notes: 8
 Mars, 2018
8._TSH_565 GC-01-005-1-05
Location: Tree: 9
Notes: 9
 Mars, 2018
9._TSH_565 GC-01-005-1-05
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018
10._TSH_565 GC-01-005-1-05
Location: Tree: 13
Notes: 13
 Mars, 2018
11._TSH_565 GC-01-005-1-05
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018
12._TSH_565
Location: Tree: FP 4
 Mars, 2018
13._TSH_565
Location: Tree: FP 1
 Mars, 2018
14._TSH_565
Location: Tree: FP 2
 Mars, 2018

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

15._TSH_565 RUQ 1741
 Lambert Motilal, 2023
Population Assignment: 

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1237 113TcSNP1242 114TcSNP1253 115TcSNP1270
116TcSNP1275 117TcSNP1293 118TcSNP1309 119TcSNP1350 120TcSNP1383
121TcSNP1401 122TcSNP1404 123TcSNP1414 124TcSNP1439 125TcSNP1442
126TcSNP1458 127TcSNP1484 128TcSNP1520 129TcSNP1524 130TcSNP1527
131Tcm001s00947643 132Tcm002s20575712 133Tcm003s01336581 134Tcm003s07402719 135Tcm006s26664133