SNP Profiles of TSA 644 View Data

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
1._TSA 644___	CG	GT	AT	GG	CC	TT	CC	TT	AC	GG	TT	TT	GG	AC
2._TSA 644___	CG	GT	AT	GG	CC	TT	CC	TT	AC	GG	TT	TT	GG	AC
3._TSA 644___	CG	GT	AT	GG	CC	TT	CC	TT	AC	GG	TT	TT	GG	AC
4._TSA 644___	CG	GT	AT	GG	CC	TT	CC	TT	AC	GG	TT	TT	GG	AC
5._TSA 644___	CG	GT	AT	GG	CC	TT	CC	TT	AC	GG	TT	TT	GG	AC
6._TSA 644___	CC	GT	AA	AA	CC	TT	CC	CT	CC	GT	TT	AT	GG	CC
7._TSA 644___	CC	GT	AA	AA	CC	TT	CC	CT	CC	GT	TT	AT	GG	CC
8._TSA 644___	CG	GT	AT	GG	CC	TT	CC	TT	AC	GG	TT	TT	GG	AC
9._TSA 644___	CG	GT	AT	GG	CC	TT	CC	TT	AC	GG	TT	TT	GG	AC
10._TSA 644___	CG	GT	AT	GG	CC	TT	CC	TT	AC	GG	TT	TT	GG	AC
11._TSA 644___	CC	GT	AA	AA	CC	TT	CC	CT	CC	GT	TT	AT	GG	CC
12._TSA 644___	CC	GT	AA	AA	CC	TT	CC	CT	CC	GT	TT	AT	GG	CC
13._TSA 644___	CC	GT	AA	AA	CC	TT	CC	CT	CC	GT	TT	AT	GG	CC
14._TSA 644___	CG	GT	AT	GG	CC	TT	CC	TT	AC	GG	TT	TT	GG	AC
15._TSA 644___	CC	GT	AA	AA	CC	TT	CC	CT	CC	GT	TT	AT	GG	CC
16._TSA 644___	CG	___	AT	___	___	___	___	___	AC	GG	TT	___	___	AC
17._TSA 644___	CG	___	AT	___	___	___	___	___	AC	GG	TT	___	___	AC
18._TSA 644___	CG	___	AT	___	___	___	___	___	AC	GG	TT	___	___	AC
19._TSA 644___	CG	___	AT	___	___	___	___	___	AC	GG	TT	___	___	AC
20._TSA 644___	CG	___	AT	___	___	___	___	___	AC	GG	TT	___	___	AC
21._TSA 644___	CG	___	AT	___	___	___	___	___	AC	GG	TT	___	___	AC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
1._TSA 644___	CC	AG	AG	TT	AT	AG	GG	AA	CC	AG	AG	AA	CG	AG
2._TSA 644___	CC	AG	AG	TT	AT	AG	GG	AA	CC	AG	AG	AA	CG	AG
3._TSA 644___	CC	AG	AG	TT	AT	AG	GG	AA	CC	AG	AG	AA	CG	AG
4._TSA 644___	CC	AG	AG	TT	AT	AG	GG	AA	CC	AG	AG	AA	CG	AG
5._TSA 644___	CC	AG	AG	TT	AT	AG	GG	AA	CC	AG	AG	AA	CG	AG
6._TSA 644___	CC	AG	AG	CC	AA	AG	GG	AT	CC	AA	AG	AA	GG	AG
7._TSA 644___	CC	AG	AG	CC	AA	AG	GG	AT	CC	AA	AG	AA	GG	AG
8._TSA 644___	CC	AG	AG	TT	AT	AG	GG	AA	CC	AG	AG	AA	CG	AG
9._TSA 644___	CC	AG	AG	TT	AT	AG	GG	AA	CC	AG	AG	AA	CG	AG
10._TSA 644___	CC	AG	AG	TT	AT	AG	GG	AA	CC	AG	AG	AA	CG	AG
11._TSA 644___	CC	AG	AG	CC	AA	AG	GG	AT	CC	AA	AG	AA	GG	AG
12._TSA 644___	CC	AG	AG	CC	AA	AG	GG	AT	CC	AA	AG	AA	GG	AG
13._TSA 644___	CC	AG	AG	CC	AA	AG	GG	AT	CC	AA	AG	AA	GG	AG
14._TSA 644___	CC	AG	AG	TT	AT	AG	GG	AA	CC	AG	AG	AA	CG	AG
15._TSA 644___	CC	AG	AG	CC	AA	AG	GG	AT	CC	AA	AG	AA	GG	AG
16._TSA 644___	CC	AG	___	TT	___	___	___	AA	___	___	AG	___	___	AG
17._TSA 644___	CC	AG	___	TT	___	___	___	AA	___	___	AG	___	___	AG
18._TSA 644___	CC	AG	___	TT	___	___	___	AA	___	___	AG	___	___	AG
19._TSA 644___	CC	AG	___	TT	___	___	___	AA	___	___	AG	___	___	AG
20._TSA 644___	CC	AG	___	TT	___	___	___	AA	___	___	AG	___	___	AG
21._TSA 644___	CC	AG	___	TT	___	___	___	AA	___	___	AG	___	___	___

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
1._TSA 644___	AA	AC	CT	AA	GG	GG	GG	AC	CC	AG	CT	AA	AA	AA
2._TSA 644___	AA	AC	CT	AA	GG	GG	GG	AC	CC	AG	CT	AA	AA	AA
3._TSA 644___	AA	AC	CT	AA	GG	GG	GG	AC	CC	AG	CT	AA	AA	AA
4._TSA 644___	AA	AC	CT	AA	GG	GG	GG	AC	CC	AG	CT	AA	AA	AA
5._TSA 644___	AA	AC	CT	AA	GG	GG	GG	AC	CC	AG	CT	AA	AA	AA
6._TSA 644___	AC	AC	CT	AA	GG	AG	CG	AC	CC	AA	TT	AA	AA	AA
7._TSA 644___	AC	AC	CT	AA	GG	AG	CG	AC	CC	AA	TT	AA	AA	AA
8._TSA 644___	AA	AC	TT	AA	GG	GG	GG	AC	CC	AG	CT	AA	AA	AA
9._TSA 644___	AA	AC	CT	AA	GG	GG	GG	AC	CC	AG	CT	AA	AA	AA
10._TSA 644___	AA	AC	CT	AA	GG	GG	GG	AC	CC	AG	CT	AA	AA	AA
11._TSA 644___	AC	AC	CT	AA	GG	AG	CG	___	CC	AA	TT	AA	AA	AA
12._TSA 644___	AC	AC	CT	AA	GG	AG	CG	AC	CC	AA	TT	AA	AA	AA
13._TSA 644___	AC	AC	CT	AA	GG	AG	CG	AC	CC	AA	TT	AA	AA	AA
14._TSA 644___	AA	AC	CT	AA	GG	GG	GG	AC	CC	AG	CT	AA	AA	AA
15._TSA 644___	AC	AC	CT	AA	GG	AG	CG	AC	CC	AA	TT	AA	AA	AA
16._TSA 644___	___	AC	CT	___	GG	___	GG	AC	___	___	CT	AA	___	___
17._TSA 644___	___	AC	CT	___	GG	___	GG	AC	___	___	CT	AA	___	___
18._TSA 644___	___	AC	CT	___	GG	___	GG	AC	___	___	CT	AA	___	___
19._TSA 644___	___	AC	CT	___	GG	___	GG	AC	___	___	CT	AA	___	___
20._TSA 644___	___	AC	CT	___	GG	___	GG	AC	___	___	CT	AA	___	___
21._TSA 644___	___	AC	CT	___	___	___	GG	AA	___	___	CT	AG	___	___

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
1._TSA 644___	TT	CT	GG	AG	TT	GG	TT	CC	CG	AA	CC	CC	CT	CG
2._TSA 644___	TT	CT	GG	AG	TT	GG	TT	CC	CG	AA	CC	CC	CT	CG
3._TSA 644___	TT	CT	GG	AG	TT	GG	TT	CC	CG	AA	CC	CC	CT	CG
4._TSA 644___	TT	CT	GG	AG	TT	GG	TT	CC	CG	AA	CC	CC	CT	CG
5._TSA 644___	TT	CT	GG	AG	TT	GG	TT	CC	CG	AA	CC	CC	CT	CG
6._TSA 644___	TT	TT	GT	AA	TT	GT	TT	CC	CC	AA	CG	CG	CT	CG
7._TSA 644___	TT	TT	GT	AA	TT	GT	TT	CC	CC	AA	CG	CG	CT	CG
8._TSA 644___	TT	CT	GG	AG	TT	GG	TT	CC	CG	AA	CC	CC	CT	CG
9._TSA 644___	TT	CT	GG	AG	TT	GG	TT	CC	CG	AA	CC	CC	CT	CG
10._TSA 644___	TT	CT	GG	AG	TT	GG	TT	CC	CG	AA	CC	CC	CT	CG
11._TSA 644___	TT	TT	GT	AA	TT	GT	TT	CC	CC	AA	CG	CG	CT	CG
12._TSA 644___	TT	TT	GT	AA	TT	GT	TT	CC	CC	AA	CG	CG	CT	CG
13._TSA 644___	TT	TT	GT	AA	TT	GT	TT	CC	CC	AA	CG	CG	CT	CG
14._TSA 644___	TT	CT	GG	AG	TT	GG	TT	CC	CG	AA	CC	CC	CT	CG
15._TSA 644___	TT	TT	GT	AA	TT	GT	TT	CC	CC	AA	CG	CG	CT	CG
16._TSA 644___	___	___	GG	___	___	___	___	___	___	___	CC	___	CT	___
17._TSA 644___	___	___	GG	___	___	___	___	___	___	___	CC	___	CT	___
18._TSA 644___	___	___	GG	___	___	___	___	___	___	___	CC	___	CT	___
19._TSA 644___	___	___	GG	___	___	___	___	___	___	___	CC	___	CT	___
20._TSA 644___	___	___	GG	___	___	___	___	___	___	___	CC	___	CT	___
21._TSA 644___	___	___	GG	___	___	___	___	___	___	___	CC	___	CT	___

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
1._TSA 644___	GG	CC	CG	CC	AT	CT	AA	CC	TT	CC	TT	AG	GG	AA
2._TSA 644___	GG	CC	CG	CC	AT	CT	AA	CC	TT	CC	TT	AG	GG	AA
3._TSA 644___	GG	CC	CG	CC	AT	CT	AA	CC	TT	CC	TT	AG	GG	AA
4._TSA 644___	GG	CC	CG	CC	AT	CT	AA	CC	TT	CC	TT	AG	GG	AA
5._TSA 644___	GG	CC	CG	CC	AT	CT	AA	CC	TT	CC	TT	AG	GG	AA
6._TSA 644___	GG	CT	CG	CC	AT	CT	AA	CC	CT	CC	TT	AG	GG	TT
7._TSA 644___	GG	CT	CG	CC	AT	CT	AA	CC	CT	CC	TT	AG	GG	TT
8._TSA 644___	GG	CC	CG	CC	AT	CT	AA	CC	TT	CC	TT	AG	GG	AA
9._TSA 644___	GG	CC	CG	CC	AT	CT	AA	CC	TT	CC	TT	AG	GG	AA
10._TSA 644___	GG	CC	CG	CC	AT	CT	AA	CC	TT	CC	TT	AG	GG	AA
11._TSA 644___	GG	CT	CG	CC	AT	CT	AA	CC	CT	CC	TT	AG	GG	___
12._TSA 644___	GG	CT	CG	CC	AT	CT	AA	CC	CT	CC	TT	AG	GG	TT
13._TSA 644___	GG	CT	CG	CC	AT	CT	AA	CC	CT	CC	TT	AG	GG	TT
14._TSA 644___	GG	CC	CG	CC	AT	CT	AA	CC	TT	CC	TT	AG	GG	AA
15._TSA 644___	GG	CT	CG	CC	AT	CT	AA	CC	CT	CC	TT	AG	GG	TT
16._TSA 644___	___	CC	CG	___	AT	CT	AA	___	___	___	TT	AG	___	AA
17._TSA 644___	___	CC	CG	___	AT	CT	AA	___	___	___	TT	AG	___	AA
18._TSA 644___	___	CC	CG	___	AT	CT	AA	___	___	___	TT	AG	___	AA
19._TSA 644___	___	CC	CG	___	AT	CT	AA	___	___	___	TT	AG	___	AA
20._TSA 644___	___	CC	CG	___	AT	CT	AA	___	___	___	TT	AG	___	AA
21._TSA 644___	___	CC	CG	___	___	CT	___	___	___	___	___	AG	___	AA

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
1._TSA 644___	CT	GG	TT	CC	CT	CT	CT	TT	AC	GT	TT	TT	CC	AG
2._TSA 644___	CT	GG	TT	CC	CT	CT	CT	TT	AC	GT	TT	___	CC	AG
3._TSA 644___	CT	GG	TT	CC	CT	CT	CT	TT	AC	GT	TT	TT	CC	AG
4._TSA 644___	CT	GG	TT	CC	CT	CT	CT	TT	AC	GT	TT	TT	CC	AG
5._TSA 644___	CT	GG	TT	CC	CT	CT	CT	TT	AC	GT	TT	TT	CC	AG
6._TSA 644___	TT	GG	TT	CT	CT	CT	TT	GT	AC	GT	CT	___	CC	AG
7._TSA 644___	TT	GG	TT	CT	CT	CT	TT	GT	AC	GT	CT	___	CC	AG
8._TSA 644___	CT	GG	TT	CC	CT	CT	CT	TT	AC	GT	TT	TT	CC	AG
9._TSA 644___	CT	GG	TT	CC	CT	CT	CT	TT	AC	GT	TT	TT	CC	AG
10._TSA 644___	CT	GG	TT	CC	CT	CT	CT	TT	___	GT	TT	TT	CC	AG
11._TSA 644___	TT	GG	TT	CT	CT	CT	TT	GT	AC	GT	CT	___	CC	AG
12._TSA 644___	TT	GG	TT	CT	CT	CT	TT	GT	AC	GT	CT	___	CC	AG
13._TSA 644___	TT	GG	TT	CT	CT	CT	TT	GT	AC	GT	CT	___	CC	AG
14._TSA 644___	CT	GG	TT	CC	CT	CT	CT	TT	AC	GT	TT	TT	CC	AG
15._TSA 644___	TT	GG	TT	CT	CT	CT	TT	GT	AC	GT	CT	___	CC	AG
16._TSA 644___	___	___	___	CC	___	___	CT	___	___	GT	TT	___	CC	___
17._TSA 644___	___	___	___	CC	___	___	CT	___	___	GT	TT	___	CC	___
18._TSA 644___	___	___	___	CC	___	___	CT	___	___	GT	TT	___	CC	___
19._TSA 644___	___	___	___	CC	___	___	CT	___	___	GT	TT	___	CC	___
20._TSA 644___	___	___	___	CC	___	___	CT	___	___	GT	TT	___	CC	___
21._TSA 644___	___	___	___	___	___	___	CT	___	___	GT	TT	___	CC	___

	85	86	87	88	89	90	91	92	93	94	95
1._TSA 644___	CT	CC	TT	CC	AG	CC	CC	AA	CC	AG	CC	X_X	X_X	X_X
2._TSA 644___	CT	CC	TT	CC	AG	CC	CC	AA	CC	AG	CC	X_X	X_X	X_X
3._TSA 644___	CT	CC	TT	CC	AG	CC	CC	AA	CC	AG	CC	X_X	X_X	X_X
4._TSA 644___	CT	CC	TT	CC	AG	CC	CC	AA	CC	AG	CC	X_X	X_X	X_X
5._TSA 644___	CT	CC	TT	CC	AG	CC	CC	AA	CC	AG	CC	X_X	X_X	X_X
6._TSA 644___	CC	CC	CC	CG	AG	CT	CC	AA	AC	AG	AC	X_X	X_X	X_X
7._TSA 644___	CC	CC	CC	CG	AG	CT	CC	AA	AC	AG	AC	X_X	X_X	X_X
8._TSA 644___	CT	CC	TT	CC	AG	CC	CC	AA	CC	AG	CC	X_X	X_X	X_X
9._TSA 644___	CT	CC	TT	CC	AG	CC	CC	AA	CC	AG	CC	X_X	X_X	X_X
10._TSA 644___	CT	CC	TT	CC	AG	CC	CC	AA	CC	AG	CC	X_X	X_X	X_X
11._TSA 644___	CC	CC	CC	CG	AG	CT	CC	AA	AC	AG	AC	X_X	X_X	X_X
12._TSA 644___	CC	CC	CC	CG	AG	CT	CC	AA	AC	AG	AC	X_X	X_X	X_X
13._TSA 644___	CC	CC	CC	CG	AG	CT	CC	AA	AC	AG	AC	X_X	X_X	X_X
14._TSA 644___	CT	CC	TT	CC	AG	CC	CC	AA	CC	AG	CC	X_X	X_X	X_X
15._TSA 644___	CC	CC	CC	CG	AG	CT	CC	AA	AC	AG	AC	X_X	X_X	X_X
16._TSA 644___	CT	___	TT	CC	AG	CC	___	___	___	___	___	X_X	X_X	X_X
17._TSA 644___	CT	___	TT	CC	AG	CC	___	___	___	___	___	X_X	X_X	X_X
18._TSA 644___	CT	___	TT	CC	AG	CC	___	___	___	___	___	X_X	X_X	X_X
19._TSA 644___	CT	___	TT	CC	AG	CC	___	___	___	___	___	X_X	X_X	X_X
20._TSA 644___	CT	___	TT	CC	AG	CC	___	___	___	___	___	X_X	X_X	X_X
21._TSA 644___	CT	___	TT	CC	AG	___	___	___	___	___	___	X_X	X_X	X_X

Mars Center for Cocoa Science Brazil

1._TSA_644 GC-04-034-2-16

Location: Tree: 2

Notes: 2 > FP1

2._TSA_644 GC-04-034-2-16

Location: Tree: 3

Notes: 3 > FP2

3._TSA_644 GC-04-034-2-16

Location: Tree: 4

Notes: 4 > FP4

4._TSA_644 GC-04-034-2-16

Location: Tree: 6

Notes: 6

5._TSA_644 GC-04-034-2-16

Location: Tree: 7

Notes: 7 > FP3

6._TSA_644 GC-08-174-4-17

Location: Tree: 1

Notes: 1

7._TSA_644 GC-08-174-4-17

Location: Tree: 2

Notes: 2

8._TSA_644 GC-08-174-4-17

Location: Tree: 4

Notes: 4

9._TSA_644 GC-08-174-4-17

Location: Tree: 5

Notes: 5

10._TSA_644 GC-08-174-4-17

Location: Tree: 6

Notes: 6

11._TSA_644 GC-08-175-4-18

Location: Tree: 1

Notes: 1

12._TSA_644 GC-08-175-4-18

Location: Tree: 2

Notes: 2

13._TSA_644 GC-08-175-4-18

Location: Tree: 3

Notes: 3

14._TSA_644 GC-08-175-4-18

Location: Tree: 4

Notes: 4

15._TSA_644 GC-08-175-4-18

Location: Tree: 5

Notes: 5

16._TSA_644

Location: 4216 6

Dapeng Zhang, 2016

17._TSA_644

Location: 4216 2 > FP

Dapeng Zhang, 2016

18._TSA_644

Location: 4216 3 > FP

Dapeng Zhang, 2016

19._TSA_644

Location: 4216 4 > FP

Dapeng Zhang, 2016

20._TSA_644

Location: 4216 7 > FP

Dapeng Zhang, 2016

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

21._TSA_644

Location: La Montaña Lot 8, Row 1 13_15

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP28	3	TcSNP32	4	TcSNP42	5	TcSNP60
6	TcSNP75	7	TcSNP90	8	TcSNP122	9	TcSNP144	10	TcSNP150
11	TcSNP151	12	TcSNP154	13	TcSNP174	14	TcSNP193	15	TcSNP226
16	TcSNP230	17	TcSNP240	18	TcSNP242	19	TcSNP316	20	TcSNP329
21	TcSNP364	22	TcSNP372	23	TcSNP413	24	TcSNP418	25	TcSNP429
26	TcSNP430	27	TcSNP448	28	TcSNP469	29	TcSNP521	30	TcSNP529
31	TcSNP534	32	TcSNP547	33	TcSNP560	34	TcSNP561	35	TcSNP577
36	TcSNP591	37	TcSNP602	38	TcSNP606	39	TcSNP619	40	TcSNP645
41	TcSNP653	42	TcSNP689	43	TcSNP701	44	TcSNP702	45	TcSNP723
46	TcSNP731	47	TcSNP751	48	TcSNP776	49	TcSNP799	50	TcSNP823
51	TcSNP836	52	TcSNP860	53	TcSNP872	54	TcSNP878	55	TcSNP891
56	TcSNP894	57	TcSNP899	58	TcSNP917	59	TcSNP929	60	TcSNP944
61	TcSNP953	62	TcSNP994	63	TcSNP998	64	TcSNP999	65	TcSNP1034
66	TcSNP1041	67	TcSNP1060	68	TcSNP1062	69	TcSNP1063	70	TcSNP1075
71	TcSNP1096	72	TcSNP1111	73	TcSNP1126	74	TcSNP1144	75	TcSNP1149
76	TcSNP1156	77	TcSNP1165	78	TcSNP1175	79	TcSNP1242	80	TcSNP1253
81	TcSNP1270	82	TcSNP1309	83	TcSNP1350	84	TcSNP1383	85	TcSNP1414
86	TcSNP1439	87	TcSNP1442	88	TcSNP1458	89	TcSNP1484	90	TcSNP1520
91	Tcm001s00947643	92	Tcm002s20575712	93	Tcm003s01336581	94	Tcm003s07402719	95	Tcm006s26664133