SNP Profiles of "PA 195 [PER]"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-05-166-4-19
______GGGGAT___GG______CCTTCCTT___
2. _GC-05-166-4-19
______GGGGAT___GG______CCTTCCTT___
3. _GC-05-166-4-19
______GGGGAT___GG______CCTTCCTT___
4. _GC-05-166-4-19
______GGGGAT___GG______CCTTCCTT___
5. _GC-05-166-4-19
______GGCCAT___GG______GGAACCAA___
6. _5419_4
______GG___AT___________________________
7. _5419_1_>_FP
______GG___AT___________________________
8. _5419_2_>_FP
______GG___AT___________________________
9. _5419_5_>_FP
______GG___AT___________________________
10. _RUQ_1642
TTCC_________CC___CCGG____________GT
11. _RUQ_1642
______GGCCAT___GG______GGAACCAA___
12. _RUQ_1642
______________________________TTCC______
13. _RUQ_1642
______________________________TTCC______
14. _RUQ_1642
______GG___AT___________________________
15. _RUQ_1642
______GG___AT___________________________
16. _6B_C165_T1
______GG___AT___________________________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-05-166-4-19
___ACGGCCAAGG______CC___CCGGGGCC
2. _GC-05-166-4-19
___ACGGCCAAGG______CC___CCGGGGCC
3. _GC-05-166-4-19
___ACGGCCAAGG______CC___CCGGGGCC
4. _GC-05-166-4-19
___ACGGCCAAGG______CC___CCGGGGCC
5. _GC-05-166-4-19
___ACCCGGTTGG______CC___GGGGGGGG
6. _5419_4
___ACGGCC____________CC___CCGG___CC
7. _5419_1_>_FP
___ACGGCC____________CC___CCGG___CC
8. _5419_2_>_FP
___ACGGCC____________CC___CCGG___CC
9. _5419_5_>_FP
___ACGGCC____________CC___CCGG___CC
10. _RUQ_1642
ATAC____________CCGG___GT___GG______
11. _RUQ_1642
___ACCCGGTTGG______CC___GGGGGGGG
12. _RUQ_1642
___ACGGCC___GG______CC___CCGG___CC
13. _RUQ_1642
___ACGGCC___GG______CC___CCGG___CC
14. _RUQ_1642
___ACGGCC____________CC___CCGG___CC
15. _RUQ_1642
___ACGGCC____________CC___CCGG___CC
16. _6B_C165_T1
___ACGGCC____________CC______GG___CC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-05-166-4-19
______AAGG___GGAATTAG___GGTTCCAA
2. _GC-05-166-4-19
______AAGG___GGAATTAG___GGTTCCAA
3. _GC-05-166-4-19
______AAGG___GGAATTAG___GGTTCCAA
4. _GC-05-166-4-19
______AAGG___GGAATTAG___GGTTCCAA
5. _GC-05-166-4-19
______TTGG___GGAAAAAG___GGTTGG___
6. _5419_4
__________________AA_________GG______AA
7. _5419_1_>_FP
__________________AA_________GG______AA
8. _5419_2_>_FP
__________________AA_________GG______AA
9. _5419_5_>_FP
__________________AA_________GG______AA
10. _RUQ_1642
TTAA___GGAA____________CT____________
11. _RUQ_1642
______TTGG___GGAAAAAG___GGTTGG___
12. _RUQ_1642
_________GG___GGAA_______________CCAA
13. _RUQ_1642
_________GG___GGAA_______________CCAA
14. _RUQ_1642
__________________AA_________GG______AA
15. _RUQ_1642
__________________AA_________GG______AA
16. _6B_C165_T1
__________________AA_________GG______AA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-05-166-4-19
______CC___AACC___AGGGGGCG___CCTT
2. _GC-05-166-4-19
______CC___AACC___AGGGGGCG___CCTT
3. _GC-05-166-4-19
______CC___AACC___AGGGGGCG___CCTT
4. _GC-05-166-4-19
______CC___AACC___AGGGGGCG___CCTT
5. _GC-05-166-4-19
GG___CC___AA______AGCCGGCG___CCAA
6. _5419_4
____________AACC______GG___CG___CC___
7. _5419_1_>_FP
____________AACC______GG___CG___CC___
8. _5419_2_>_FP
____________AACC______GG___CG___CC___
9. _5419_5_>_FP
____________AACC______GG___CG___CC___
10. _RUQ_1642
___AC___CCAA___AG_________CGAACCTT
11. _RUQ_1642
______CC___AA______AGCCGGCG___CCAA
12. _RUQ_1642
____________AACC______GG___CG___CCTT
13. _RUQ_1642
____________AACC______GG___CG___CCTT
14. _RUQ_1642
____________AACC______GG___CG___CC___
15. _RUQ_1642
____________AACC______GG___CG___CC___
16. _6B_C165_T1
____________AACC______GG___CG___CC___
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-05-166-4-19
AATT_________AGAA___AACTCTGGAG___
2. _GC-05-166-4-19
AATT_________AGAA___AACTCTGGAG___
3. _GC-05-166-4-19
AATT_________AGAA___AACTCTGGAG___
4. _GC-05-166-4-19
AATT_________AGAA___AACTCTGGAG___
5. _GC-05-166-4-19
___AA____________AG___AA______CCAG___
6. _5419_4
___TT_________AG_______________GG______
7. _5419_1_>_FP
___TT_________AG_______________GG______
8. _5419_2_>_FP
___TT_________AG_______________GG______
9. _5419_5_>_FP
___TT_________AG_______________GG______
10. _RUQ_1642
______CCGGCCAA___CG______CTGGAGCT
11. _RUQ_1642
___AA____________AG___AA______CCAG___
12. _RUQ_1642
___TT________________________CTGGAG___
13. _RUQ_1642
___TT________________________CTGGAG___
14. _RUQ_1642
___TT_________AA_______________GG______
15. _RUQ_1642
___TT_________AA_______________GG______
16. _6B_C165_T1
___TT_________AA_______________GG______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-05-166-4-19
GGGGTT___AA___CCAAGGCCCCCCGGCC
2. _GC-05-166-4-19
GGGGTT___AA___CCAAGGCCCCCCGGCC
3. _GC-05-166-4-19
GGGGTT___AA___CCAAGGCCCCCCGGCC
4. _GC-05-166-4-19
GGGGTT___AA___CCAAGGCCCCCCGGCC
5. _GC-05-166-4-19
CCCCAA___AA___GGAGCC___GGGGGGGG
6. _5419_4
________________________GG___CC______CC
7. _5419_1_>_FP
________________________GG___CC______CC
8. _5419_2_>_FP
________________________GG___CC______CC
9. _5419_5_>_FP
________________________GG___CC______CC
10. _RUQ_1642
_________TTAAAATT___GG_________GG___
11. _RUQ_1642
CCCCAA___AA___GGAGCC___GGGGGGGG
12. _RUQ_1642
______TT___AA_________GGCCCC_________
13. _RUQ_1642
______TT___AA_________GGCCCC_________
14. _RUQ_1642
________________________GG___CC______CC
15. _RUQ_1642
________________________GG___CC______CC
16. _6B_C165_T1
________________________GG___CC______CC
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1. _GC-05-166-4-19
CGCC___AACCAGCT______TTCC___CCAG
2. _GC-05-166-4-19
CGCC___AACCAGCT______TTCC___CCAG
3. _GC-05-166-4-19
CGCC___AACCAGCT______TTCC___CCAG
4. _GC-05-166-4-19
CGCC___AACCAGCT______TTCC___CCAG
5. _GC-05-166-4-19
CGGG___AAGGAG_________AA______GGAG
6. _5419_4
CG______AACCAG__________________CCAG
7. _5419_1_>_FP
CG______AACCAG__________________CCAG
8. _5419_2_>_FP
CG______AACCAG__________________CCAG
9. _5419_5_>_FP
CG______AACCAG__________________CCAG
10. _RUQ_1642
______CC______AGCTTTAA______CC___AG
11. _RUQ_1642
CGGG___AAGGAG_________AA______GGAG
12. _RUQ_1642
_______________AGCC_______________CC___
13. _RUQ_1642
_______________AGCC_______________CC___
14. _RUQ_1642
CG______AACCAG__________________CCAG
15. _RUQ_1642
CG______AACCAG__________________CCAG
16. _6B_C165_T1
CG______AACCAG__________________CCAG
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1. _GC-05-166-4-19
GGAACCGG___TTCCTTCCCCGT______CC
2. _GC-05-166-4-19
GGAACCGG___TTCCTTCCCCGT______CC
3. _GC-05-166-4-19
GGAACCGG___TTCCTTCCCCGT______CC
4. _GC-05-166-4-19
GGAACCGG___TTCCTTCCCCGT______CC
5. _GC-05-166-4-19
CCAAGGGG_________AAGG___AC_________
6. _5419_4
___AA____________CC______CC____________
7. _5419_1_>_FP
___AA____________CC______CC____________
8. _5419_2_>_FP
___AA____________CC______CC____________
9. _5419_5_>_FP
___AA____________CC______CC____________
10. _RUQ_1642
____________CC___CC____________GGAA___
11. _RUQ_1642
CCAAGGGG_________AAGG___AC_________
12. _RUQ_1642
GG______GG___TT________________________
13. _RUQ_1642
GG______GG___TT________________________
14. _RUQ_1642
___AA____________CC______CC____________
15. _RUQ_1642
___AA____________CC______CC____________
16. _6B_C165_T1
___AA_____________________CC____________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1. _GC-05-166-4-19
TTCC______TTCCGG______TTCCCCCGGG
2. _GC-05-166-4-19
TTCC______TTCCGG______TTCCCCCGGG
3. _GC-05-166-4-19
TTCC______TTCCGG______TTCCCCCGGG
4. _GC-05-166-4-19
TTCC______TTCCGG______TTCCCCCGGG
5. _GC-05-166-4-19
AAGG______AACCGG______AAGGGGCGGG
6. _5419_4
TTCC_________CC_________TT___CCCGGG
7. _5419_1_>_FP
TTCC_________CC_________TT___CCCGGG
8. _5419_2_>_FP
TTCC_________CC_________TT___CCCGGG
9. _5419_5_>_FP
TTCC_________CC_________TT___CCCGGG
10. _RUQ_1642
TT___GGTT_________AGGG_________CG___
11. _RUQ_1642
AAGG______AACCGG______AAGGGGCGGG
12. _RUQ_1642
TT_________TT_______________CCCCCGGG
13. _RUQ_1642
TT_________TT_______________CCCCCGGG
14. _RUQ_1642
TTCC_________CC_________TT___CCCGGG
15. _RUQ_1642
TTCC_________CC_________TT___CCCGGG
16. _6B_C165_T1
TTCC_________CC_________TT___CCCGGG
 127 128 129 130 131 132 133 134       
1. _GC-05-166-4-19
CC______ACAACCAAAAX_XX_XX_XX_XX_XX_X
2. _GC-05-166-4-19
CC______ACAACCAAAAX_XX_XX_XX_XX_XX_X
3. _GC-05-166-4-19
CC______ACAACCAAAAX_XX_XX_XX_XX_XX_X
4. _GC-05-166-4-19
CC______ACAACCAAAAX_XX_XX_XX_XX_XX_X
5. _GC-05-166-4-19
GG______AC___CCAAAAX_XX_XX_XX_XX_XX_X
6. _5419_4
CC_____________________X_XX_XX_XX_XX_XX_X
7. _5419_1_>_FP
CC_____________________X_XX_XX_XX_XX_XX_X
8. _5419_2_>_FP
CC_____________________X_XX_XX_XX_XX_XX_X
9. _5419_5_>_FP
CC_____________________X_XX_XX_XX_XX_XX_X
10. _RUQ_1642
___CCTT_______________X_XX_XX_XX_XX_XX_X
11. _RUQ_1642
GG______AC___CCAAAAX_XX_XX_XX_XX_XX_X
12. _RUQ_1642
________________________X_XX_XX_XX_XX_XX_X
13. _RUQ_1642
________________________X_XX_XX_XX_XX_XX_X
14. _RUQ_1642
CC_____________________X_XX_XX_XX_XX_XX_X
15. _RUQ_1642
CC_____________________X_XX_XX_XX_XX_XX_X
16. _6B_C165_T1
CC_____________________X_XX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._PA_195_[PER] GC-05-166-4-19
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018
2._PA_195_[PER] GC-05-166-4-19
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018
3._PA_195_[PER] GC-05-166-4-19
Location: Tree: 4
Notes: 4
 Mars, 2018
4._PA_195_[PER] GC-05-166-4-19
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018
5._PA_195_[PER] GC-05-166-4-19
Location: Field: 5, Block: 4, Rep: 19, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018
6._PA_195_[PER]
Location: 5419 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
7._PA_195_[PER]
Location: 5419 1 > FP
 Dapeng Zhang, 2016
8._PA_195_[PER]
Location: 5419 2 > FP
 Dapeng Zhang, 2016
9._PA_195_[PER]
Location: 5419 5 > FP
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

10._PA_195_[PER] RUQ 1642
 Lambert Motilal, 2023
11._PA_195_[PER] RUQ 1642
Notes: Reading_Collection
 Mars, 2018
12._PA_195_[PER] RUQ 1642
 Dapeng Zhang, 2014
13._PA_195_[PER] RUQ 1642
 Dapeng Zhang, 2014
14._PA_195_[PER] RUQ 1642
 Dapeng Zhang, 2016
15._PA_195_[PER] RUQ 1642
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

16._PA_195_[PER]
Location: 6B C165 T1
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1242 113TcSNP1253 114TcSNP1270 115TcSNP1275
116TcSNP1293 117TcSNP1309 118TcSNP1350 119TcSNP1383 120TcSNP1401
121TcSNP1404 122TcSNP1414 123TcSNP1439 124TcSNP1442 125TcSNP1458
126TcSNP1484 127TcSNP1520 128TcSNP1524 129TcSNP1527 130Tcm001s00947643
131Tcm002s20575712 132Tcm003s01336581 133Tcm003s07402719 134Tcm006s26664133