SNP Profiles of PA 7 [PER]   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._PA 7 [PER]___
______GGGGAT___GG______CCTTCCTT___
2._PA 7 [PER]___
______GGGGAT___GG______CCTTCCTT___
3._PA 7 [PER]___
______GGGGAT___GG______CCTTCCTT___
4._PA 7 [PER]___
______GGGGAT___GG______CCTTCCTT___
5._PA 7 [PER]___
______GGGGAT___GG______CCTTCCTT___
6._PA 7 [PER]___
______GG___AT___________________________
7._PA 7 [PER]___
______GG___AT___________________________
8._PA 7 [PER]___
______GG___AT___________________________
9._PA 7 [PER]___
______GG___AT___________________________
10._PA 7 [PER]___
______GG___AT___________________________
11._PA 7 [PER]___
TTCC_________TT___CCGG____________TT
12._PA 7 [PER]___
______GGCCAT___GG______GGAACCAA___
13._PA 7 [PER]___
______________________________TTCC______
14._PA 7 [PER]___
______GG___AT___________________________
15._PA 7 [PER]___
______GG___AT___________________________
16._PA 7 [PER]___
______GG___AT___________________________
17._PA 7 [PER]___
______GG___AT___________________________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._PA 7 [PER]___
___AAGGCTAAGG______AA___CCAGGGCC
2._PA 7 [PER]___
___AAGGCTAAGG______AA___CCAGGGCC
3._PA 7 [PER]___
___AAGGCTAAGG______AA___CCAGGGCC
4._PA 7 [PER]___
___AAGGCTAAGG______AA___CCAGGGCC
5._PA 7 [PER]___
___AAGGCTAAGG______AA___CCAGGGCC
6._PA 7 [PER]___
___AAGGCT____________AA___CCAG___CC
7._PA 7 [PER]___
___AAGGCT____________AA___CCAG___CC
8._PA 7 [PER]___
___AAGGCT____________AA___CCAG___CC
9._PA 7 [PER]___
___AAGGCT____________AA___CCAG___CC
10._PA 7 [PER]___
___AAGGCT____________AA___CCAG___CC
11._PA 7 [PER]___
AAAA____________CCGG___GG___AG______
12._PA 7 [PER]___
___AACCAGTTGG______AC___GGAGGGGG
13._PA 7 [PER]___
___AAGGCT___GG______AC___CCAG___CC
14._PA 7 [PER]___
___AAGGCT____________AC___CCAG___CC
15._PA 7 [PER]___
___AAGGCT____________AC___CCAG___CC
16._PA 7 [PER]___
___AAGGCT____________AC___CCAG___CC
17._PA 7 [PER]___
___AAGGCT____________AC___CCAG___CC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._PA 7 [PER]___
______AAGG___GGAACTAA___GGAACCAA
2._PA 7 [PER]___
______AAGG___GGAACTAA___GGAACCAA
3._PA 7 [PER]___
______AAGG___GGAACTAA___GGAACCAA
4._PA 7 [PER]___
______AAGG___GGAACTAA___GGAACCAA
5._PA 7 [PER]___
______AAGG___GGAACTAA___GGAACCAA
6._PA 7 [PER]___
__________________AA_________GG______AA
7._PA 7 [PER]___
__________________AA_________GG______AA
8._PA 7 [PER]___
__________________AA_________GG______AA
9._PA 7 [PER]___
__________________AA_________GG______AA
10._PA 7 [PER]___
__________________AA_________GG______AA
11._PA 7 [PER]___
TTAA___GGAA____________CT____________
12._PA 7 [PER]___
______TTGG___GGAAAGAA___GGAAGG___
13._PA 7 [PER]___
_________GG___GGAA_______________CCAA
14._PA 7 [PER]___
__________________AA_________GG______AA
15._PA 7 [PER]___
__________________AA_________GG______AA
16._PA 7 [PER]___
__________________AA_________GG______AA
17._PA 7 [PER]___
__________________AA_________GG______AA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._PA 7 [PER]___
______CC___AACC___AAGTAGGG___CCCC
2._PA 7 [PER]___
______CC___AACC___AAGTAGGG___CCCC
3._PA 7 [PER]___
______CC___AACC___AAGTAGGG___CCCC
4._PA 7 [PER]___
______CC___AACC___AAGTAGGG___CCCC
5._PA 7 [PER]___
______CC___AACC___AAGTAGGG___CCCC
6._PA 7 [PER]___
____________AACC______GT___GG___CC___
7._PA 7 [PER]___
____________AACC______GT___GG___CC___
8._PA 7 [PER]___
____________AACC______GT___GG___CC___
9._PA 7 [PER]___
____________AACC______GT___GG___CC___
10._PA 7 [PER]___
____________AACC______GT___GG___CC___
11._PA 7 [PER]___
___AC___CCAA___AA_________GGAACCCC
12._PA 7 [PER]___
GG___CC___AA______AAACAGGG___CCGG
13._PA 7 [PER]___
____________AACC______GT___GG___CCCC
14._PA 7 [PER]___
____________AACC______GT___GG___CC___
15._PA 7 [PER]___
____________AACC______GT___GG___CC___
16._PA 7 [PER]___
____________AACC______GT___GG___CC___
17._PA 7 [PER]___
____________AACC______GT___GG___CC___
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._PA 7 [PER]___
AATT_________AGAA___AACCCCGGAG___
2._PA 7 [PER]___
AATT_________AGAA___AACCCCGGAG___
3._PA 7 [PER]___
AATT_________AGAA___AACCCCGGAG___
4._PA 7 [PER]___
AATT_________AGAA___AACCCCGGAG___
5._PA 7 [PER]___
AATT_________AGAA___AACCCCGGAG___
6._PA 7 [PER]___
___TT_________AG_______________GG______
7._PA 7 [PER]___
___TT_________AG_______________GG______
8._PA 7 [PER]___
___TT_________AG_______________GG______
9._PA 7 [PER]___
___TT_________AG_______________GG______
10._PA 7 [PER]___
___TT_________AG_______________GG______
11._PA 7 [PER]___
______CCGGCCAA___CC______CCGGAGCT
12._PA 7 [PER]___
___AA____________AG___AA______CCAG___
13._PA 7 [PER]___
___TT________________________CCGGAG___
14._PA 7 [PER]___
___TT_________AA_______________GG______
15._PA 7 [PER]___
___TT_________AG_______________GG______
16._PA 7 [PER]___
___TT_________AG_______________GG______
17._PA 7 [PER]___
___TT_________AG_______________GG______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._PA 7 [PER]___
GTGGTT___AA___GG___GGCCCCCCGGCC
2._PA 7 [PER]___
GTGGTT___AA___GG___GGCCCCCCGGCC
3._PA 7 [PER]___
GTGGTT___AA___GG___GGCCCCCCGGCC
4._PA 7 [PER]___
GTGGTT___AA___GG___GGCCCCCCGGCC
5._PA 7 [PER]___
GTGGTT___AA___GG___GGCCCCCCGGCC
6._PA 7 [PER]___
________________________GG___CC______CC
7._PA 7 [PER]___
________________________GG___CC______CC
8._PA 7 [PER]___
________________________GG___CC______CC
9._PA 7 [PER]___
________________________GG___CC______CC
10._PA 7 [PER]___
________________________GG___CC______CC
11._PA 7 [PER]___
_________TTAAAATT___GG_________GG___
12._PA 7 [PER]___
ACCCAA___AA___CCGGCC___GGGGGGGG
13._PA 7 [PER]___
______TT___AA_________GGCCCC___GG___
14._PA 7 [PER]___
________________________GG___CC______CC
15._PA 7 [PER]___
________________________GG___CC______CC
16._PA 7 [PER]___
________________________GG___CC______CC
17._PA 7 [PER]___
________________________GG___CC______CC
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1._PA 7 [PER]___
CCCC___AACCAGCC______TTCG___CCGG
2._PA 7 [PER]___
CCCC___AACCAGCC______TTCG___CCGG
3._PA 7 [PER]___
CCCC___AACCAGCC______TTCG___CCGG
4._PA 7 [PER]___
CCCC___AACCAGCC______TTCG___CCGG
5._PA 7 [PER]___
CCCC___AACCAGCC______TTCG___CCGG
6._PA 7 [PER]___
CC______AACCAG__________________CCGG
7._PA 7 [PER]___
CC______AACCAG__________________CCGG
8._PA 7 [PER]___
CC______AACCAG__________________CCGG
9._PA 7 [PER]___
CC______AACCAG__________________CCGG
10._PA 7 [PER]___
CC______AACCAG__________________CCGG
11._PA 7 [PER]___
______CC______AGCCCTAA______CT___GG
12._PA 7 [PER]___
CCGG___AAGGAG_________AA______GGGG
13._PA 7 [PER]___
_______________AGCC_______________CC___
14._PA 7 [PER]___
CC______AACCAG__________________CCGG
15._PA 7 [PER]___
CC______AACCAG__________________CCGG
16._PA 7 [PER]___
CC______AACCAG__________________CCGG
17._PA 7 [PER]___
CC______AACCAG__________________CCGG
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1._PA 7 [PER]___
GGAACCGG___TTCCTTCTCCGT_________
2._PA 7 [PER]___
GGAACCGG___TTCCTTCTCCGT_________
3._PA 7 [PER]___
GGAACCGG___TTCCTTCTCCGT_________
4._PA 7 [PER]___
GGAACCGG___TTCCTTCTCCGT_________
5._PA 7 [PER]___
GGAACCGG___TTCCTTCTCCGT_________
6._PA 7 [PER]___
___AA____________CC______CC____________
7._PA 7 [PER]___
___AA____________CC______CC____________
8._PA 7 [PER]___
___AA____________CC______CC____________
9._PA 7 [PER]___
___AA____________CC______CC____________
10._PA 7 [PER]___
___AA____________CC______CC____________
11._PA 7 [PER]___
____________TT___CC____________GGAATT
12._PA 7 [PER]___
CCAAGGGG_________AAAG___AC_________
13._PA 7 [PER]___
GG______GG___TT________________________
14._PA 7 [PER]___
___AA____________CC______CC____________
15._PA 7 [PER]___
___AA____________CC______CC____________
16._PA 7 [PER]___
___AA____________CC______CC____________
17._PA 7 [PER]___
___AA____________CC______CC____________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1._PA 7 [PER]___
CCTTCT______TTCCGG______TTCCCTCG
2._PA 7 [PER]___
CCTTCT______TTCCGG______TTCCCTCG
3._PA 7 [PER]___
CCTTCT______TTCCGG______TTCCCTCG
4._PA 7 [PER]___
CCTTCT______TTCCGG______TTCCCTCG
5._PA 7 [PER]___
CCTTCT______TTCCGG______TTCCCTCG
6._PA 7 [PER]___
___TTCT_________CC_________TT___CTCG
7._PA 7 [PER]___
___TTCT_________CC_________TT___CTCG
8._PA 7 [PER]___
___TTCT_________CC_________TT___CTCG
9._PA 7 [PER]___
___TTCT_________CC_________TT___CTCG
10._PA 7 [PER]___
___TTCT_________CC_________TT___CTCG
11._PA 7 [PER]___
___TT___GGTT_________AAGG_________CG
12._PA 7 [PER]___
___AAAG______AGCCGG______AAGGAGCG
13._PA 7 [PER]___
___TT_________CT_______________CCCTCG
14._PA 7 [PER]___
___TTCT_________CC_________TT___CTCG
15._PA 7 [PER]___
___TTCT_________CC_________TT___CTCG
16._PA 7 [PER]___
___TTCT_________CC_________TT___CTCG
17._PA 7 [PER]___
___TTCT_________CC_________TT___CTCG
 127 128 129 130 131 132 133 134 135      
1._PA 7 [PER]___
AGCT______ACAGACAGACX_XX_XX_XX_XX_X
2._PA 7 [PER]___
AGCT______ACAGACAGACX_XX_XX_XX_XX_X
3._PA 7 [PER]___
AGCT______ACAGACAGACX_XX_XX_XX_XX_X
4._PA 7 [PER]___
AGCT______ACAGACAGACX_XX_XX_XX_XX_X
5._PA 7 [PER]___
AGCT______ACAGACAGACX_XX_XX_XX_XX_X
6._PA 7 [PER]___
AGCT_____________________X_XX_XX_XX_XX_X
7._PA 7 [PER]___
AGCT_____________________X_XX_XX_XX_XX_X
8._PA 7 [PER]___
AGCT_____________________X_XX_XX_XX_XX_X
9._PA 7 [PER]___
AGCT_____________________X_XX_XX_XX_XX_X
10._PA 7 [PER]___
AGCT_____________________X_XX_XX_XX_XX_X
11._PA 7 [PER]___
______TTAT_______________X_XX_XX_XX_XX_X
12._PA 7 [PER]___
AGAG______AC___ACAGACX_XX_XX_XX_XX_X
13._PA 7 [PER]___
AG________________________X_XX_XX_XX_XX_X
14._PA 7 [PER]___
AGCT_____________________X_XX_XX_XX_XX_X
15._PA 7 [PER]___
AGCT_____________________X_XX_XX_XX_XX_X
16._PA 7 [PER]___
AGCT_____________________X_XX_XX_XX_XX_X
17._PA 7 [PER]___
AGCT_____________________X_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._PA_7_[PER] GC-04-030-2-12

Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._PA_7_[PER] GC-04-030-2-12

Location: Tree: 2
Notes: 2 > FP4
 Mars, 2018

3._PA_7_[PER] GC-04-030-2-12

Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

4._PA_7_[PER] GC-04-030-2-12

Location: Tree: 7
Notes: 7 > FP2
 Mars, 2018

5._PA_7_[PER] GC-04-030-2-12

Location: Tree: 8
Notes: 8
 Mars, 2018

6._PA_7_[PER]

Location: 4212 8
 Dapeng Zhang, 2016

7._PA_7_[PER]

Location: 4212 1 > FP
 Dapeng Zhang, 2016

8._PA_7_[PER]

Location: 4212 2 > FP
 Dapeng Zhang, 2016

9._PA_7_[PER]

Location: 4212 3 > FP
 Dapeng Zhang, 2016

10._PA_7_[PER]

Location: 4212 7 > FP
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

11._PA_7_[PER] RUQ 113

 Lambert Motilal, 2023
Population Assignment: 

12._PA_7_[PER] RUQ 113

Notes: Reading_Collection
 Mars, 2018

13._PA_7_[PER] RUQ 113

 Dapeng Zhang, 2014

14._PA_7_[PER] RUQ 113

 Dapeng Zhang, 2016

Cocoa Research Institute of Ghana (CRIG) Ghana

15._PA_7_[PER]

Location: P61 842
 Dapeng Zhang, 2016

Indonesian Coffee and Cocoa Research Institute (ICCRI) Indonesia

16._PA_7_[PER]

Location: KW 185 I-033
 Dapeng Zhang, 2016

Malaysian Cocoa Board (MCB) Malaysia

17._PA_7_[PER]

Location: Row 2 C0214 27
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1237 113TcSNP1242 114TcSNP1253 115TcSNP1270
116TcSNP1275 117TcSNP1293 118TcSNP1309 119TcSNP1350 120TcSNP1383
121TcSNP1401 122TcSNP1404 123TcSNP1414 124TcSNP1439 125TcSNP1442
126TcSNP1458 127TcSNP1484 128TcSNP1520 129TcSNP1524 130TcSNP1527
131Tcm001s00947643 132Tcm002s20575712 133Tcm003s01336581 134Tcm003s07402719 135Tcm006s26664133