SNP Profiles of MO 9   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._MO 9___
______GGGGAA___GG______CCTTCCTT___
2._MO 9___
______CGGTAT___GG______CTCTACCT___
3._MO 9___
______CGGTAT___GG______CTCTACCT___
4._MO 9___
______CGGTAT___GG______CTCTACCT___
5._MO 9___
______GGGGAA___GG______CCTTCCTT___
6._MO 9___
______GGGGAA___GG______CCTTCCTT___
7._MO 9___
______GGGGAA___GG______CCTTCCTT___
8._MO 9___
______GGGGAA___GG______CCTTCCTT___
9._MO 9___
______CGGTAT___GG______CTCTACCT___
10._MO 9___
______CGGTAT___GG______CTCTACCT___
11._MO 9___
______GG___AA___________________________
12._MO 9___
______GG___AA___________________________
13._MO 9___
______GG___AA___________________________
14._MO 9___
______GG___AA___________________________
15._MO 9___
______GG___AA___________________________
16._MO 9___
______CG___AT___________________________
17._MO 9___
______CG___AT___________________________
18._MO 9___
______CG___AT___________________________
19._MO 9___
______CG___AT___________________________
20._MO 9___
______CG___AT___________________________
21._MO 9___
TTCC_________CT___CCGG____________GT
22._MO 9___
______GGCCAA___GG______GGAACCAA___
23._MO 9___
______GG___AA___________________________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._MO 9___
___ACGTCCAAGG______AA___CCAAGGCC
2._MO 9___
___AAGGCTATGG______AC___CGAGGGCT
3._MO 9___
___AAGGCTATGG______AC___CGAGGGCT
4._MO 9___
___AAGGCTATGG______AC___CGAGGGCT
5._MO 9___
___ACGTCCAAGG______AA___CCAAGGCC
6._MO 9___
___ACGTCCAAGG______AA___CCAAGGCC
7._MO 9___
___ACGTCCAAGG____________CCAAGGCC
8._MO 9___
___ACGTCCAAGG______AA___CCAAGGCC
9._MO 9___
___AAGGCTATGG______AC___CGAGGGCT
10._MO 9___
___AAGGCTATGG______AC___CGAGGGCT
11._MO 9___
___ACGTCC____________AA___CCAA___CC
12._MO 9___
___ACGTCC____________AA___CCAA___CC
13._MO 9___
___ACGTCC____________AA___CCAA___CC
14._MO 9___
___ACGTCC__________________CCAA___CC
15._MO 9___
___ACGTCC____________AA___CCAA___CC
16._MO 9___
___AAGGCT____________AC___CGAG___CT
17._MO 9___
___AAGGCT____________AC___CGAG___CT
18._MO 9___
___AAGGCT____________AC___CGAG___CT
19._MO 9___
___AAGGCT____________AC___CGAG___CT
20._MO 9___
___AAGGCT____________AC___CGAG___CT
21._MO 9___
AAAC____________CCGG___GG___AA______
22._MO 9___
___ACACGGTTGG______AC___GGAAGGGG
23._MO 9___
___ACGTCC____________AC______AA___CC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._MO 9___
______AAGG___GGAATTGG___GGTTCCAA
2._MO 9___
______ATAA___AGATCTAG___AGAAGGAG
3._MO 9___
______ATAA___AGATCTAG___AGAAGGAG
4._MO 9___
______ATAA___AGATCTAG___AGAAGGAG
5._MO 9___
______AAGG___GGAATTGG___GGTTCCAA
6._MO 9___
______AAGG___GGAATTGG___GGTTCCAA
7._MO 9___
______AAGG___GGAATTGG___GGTTCCAA
8._MO 9___
______AAGG___GGAATTGG___GGTTCCAA
9._MO 9___
______ATAA___AGATCTAG___AGAAGGAG
10._MO 9___
______ATAA___AGATCTAG___AGAAGGAG
11._MO 9___
__________________AA_________GG______AA
12._MO 9___
__________________AA_________GG______AA
13._MO 9___
__________________AA_________GG______AA
14._MO 9___
__________________AA_________GG______AA
15._MO 9___
__________________AA_________GG______AA
16._MO 9___
__________________AT_________AG______AG
17._MO 9___
__________________AT_________AG______AG
18._MO 9___
__________________AT_________AG______AG
19._MO 9___
__________________AT_________AG______AG
20._MO 9___
__________________AT_________AG______AG
21._MO 9___
TTAA___GGAA____________CT____________
22._MO 9___
______TTGG___GGAAAAGG___GGTTGG___
23._MO 9___
__________________AA_________GG______AA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._MO 9___
______CC___CCCT___AGGTGGGG___CCTT
2._MO 9___
______AC___ACCT___AGGTAGCG___ACCC
3._MO 9___
______AC___ACCT___AGGTAGCG___ACCC
4._MO 9___
______AC___ACCT___AGGTAGCG___ACCC
5._MO 9___
______CC___CCCT___AGGTGGGG___CCTT
6._MO 9___
______CC___CCCT___AGGTGGGG___CCTT
7._MO 9___
______CC___CCCT___AGGTGGGG___CCTT
8._MO 9___
______CC___CCCT___AGGTGGGG___CCTT
9._MO 9___
______AC___ACCT___AGGTAGCG___ACCC
10._MO 9___
______AC___ACCT___AGGTAGCG___ACCC
11._MO 9___
____________CCCT______GT___GG___CC___
12._MO 9___
____________CCCT______GT___GG___CC___
13._MO 9___
____________CCCT______GT___GG___CC___
14._MO 9___
____________CCCT______GT___GG___CC___
15._MO 9___
____________CCCT______GT___GG___CC___
16._MO 9___
____________ACCT______GT___CG___AC___
17._MO 9___
____________ACCT______GT___CG___AC___
18._MO 9___
____________ACCT______GT___CG___AC___
19._MO 9___
____________ACCT______GT___CG___AC___
20._MO 9___
____________ACCT______GT___CG___AC___
21._MO 9___
___AA___CTCC___AG_________GGAACCTT
22._MO 9___
GG___CC___CC______AGACGGGG___CCAA
23._MO 9___
____________CCCT______GT___GG___CC___
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._MO 9___
AATT_________AAAA___AACTCCGGAG___
2._MO 9___
AGTT_________AAAA___AACTCTGTAG___
3._MO 9___
AGTT_________AAAA___AACTCTGTAG___
4._MO 9___
AGTT_________AAAA___AACTCTGTAG___
5._MO 9___
AATT_________AAAA___AACTCCGGAG___
6._MO 9___
AATT_________AAAA___AACTCCGGAG___
7._MO 9___
AATT_________AAAA___AACTCCGGAG___
8._MO 9___
AATT_________AAAA___AACTCCGGAG___
9._MO 9___
AGTT_________AAAA___AACTCTGTAG___
10._MO 9___
AGTT_________AAAA___AACTCTGTAG___
11._MO 9___
___TT_________AA_______________GG______
12._MO 9___
___TT_________AA_______________GG______
13._MO 9___
___TT_________AA_______________GG______
14._MO 9___
___TT_________AA_______________GG______
15._MO 9___
___TT_________AA_______________GG______
16._MO 9___
___TT_________AA_______________GT______
17._MO 9___
___TT_________AA_______________GT______
18._MO 9___
___TT_________AA_______________GT______
19._MO 9___
___TT_________AA_______________GT______
20._MO 9___
___TT_________AA_______________GT______
21._MO 9___
______CCGGCCAA___CC______CTGGAGCT
22._MO 9___
___AA____________AA___AA______CCAG___
23._MO 9___
___TT_________AA_______________GG______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._MO 9___
GTGGTT___AA___GGAAGGCCCCCC___CT
2._MO 9___
GTGGTT___AC___CGAACCCCCTCCAGCT
3._MO 9___
GTGGTT___AC___CGAACCCCCTCCAGCT
4._MO 9___
GTGGTT___AC___CGAACCCCCTCCAGCT
5._MO 9___
GTGGTT___AA___GGAAGGCCCCCCGGCT
6._MO 9___
GTGGTT___AA___GGAAGGCCCCCCGGCT
7._MO 9___
GTGGTT___AA___GGAAGGCCCCCCGGCT
8._MO 9___
GTGGTT___AA___GGAAGGCCCCCCGGCT
9._MO 9___
GTGGTT___AC___CGAACCCCCTCCAGCT
10._MO 9___
GTGGTT___AC___CGAACCCCCTCCAGCT
11._MO 9___
________________________GG___CC______CT
12._MO 9___
________________________GG___CC______CT
13._MO 9___
________________________GG___CC______CT
14._MO 9___
________________________GG___CC______CT
15._MO 9___
________________________GG___CC______CT
16._MO 9___
________________________CC___CT______CT
17._MO 9___
________________________CC___CT______CT
18._MO 9___
________________________CC___CT______CT
19._MO 9___
________________________CC___CT______CT
20._MO 9___
________________________CC___CT______CT
21._MO 9___
_________TTAAAATT___GG_________GG___
22._MO 9___
ACCCAA___AA___CCAGCC___GGGGGGAG
23._MO 9___
________________________GG___CC______CT
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1._MO 9___
CGCC___AACTAGCT______TTCC___CCGG
2._MO 9___
CGCT___ATCTAGCC______TTCC___CTAG
3._MO 9___
CGCT___ATCTAGCC______TTCC___CTAG
4._MO 9___
CGCT___ATCTAGCC______TTCC___CTAG
5._MO 9___
CGCC___AACTAGCT______TTCC___CCGG
6._MO 9___
CGCC___AACTAGCT______TTCC___CCGG
7._MO 9___
CGCC___AACTAGCT______TTCC___CCGG
8._MO 9___
CGCC___AACTAGCT______TTCC___CCGG
9._MO 9___
CGCT___ATCTAGCC______TTCC___CTAG
10._MO 9___
CGCT___ATCTAGCC______TTCC___CTAG
11._MO 9___
CG______AACTAG__________________CCGG
12._MO 9___
CG______AACTAG__________________CCGG
13._MO 9___
CG______AACTAG__________________CCGG
14._MO 9___
CG______AACTAG__________________CCGG
15._MO 9___
CG______AACTAG__________________CCGG
16._MO 9___
CG______ATCTAG__________________CTAG
17._MO 9___
CG______ATCTAG__________________CTAG
18._MO 9___
CG______ATCTAG__________________CTAG
19._MO 9___
CG______ATCTAG__________________CTAG
20._MO 9___
CG______ATCTAG__________________CTAG
21._MO 9___
______CC______AGCTTTAA______TT___GG
22._MO 9___
CGGG___AAAGAG_________AA______GGGG
23._MO 9___
CG______AACTAG__________________CCGG
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1._MO 9___
GGAACCAG___TTCCTTCCCCTT______CC
2._MO 9___
GGAACTAG___ATCTTTCTCTGT______AC
3._MO 9___
GGAACTAG___ATCTTTCTCTGT______AC
4._MO 9___
GGAACTAG___ATCTTTCTCTGT______AC
5._MO 9___
GGAACCAG___TTCCTTCCCCTT______CC
6._MO 9___
GGAACCAG___TTCCTTCCCCTT______CC
7._MO 9___
GGAACCAG___TTCCTTCCCCTT______CC
8._MO 9___
GGAACCAG___TTCCTTCCCCTT______CC
9._MO 9___
GGAACTAG___ATCTTTCTCTGT______AC
10._MO 9___
GG___CTAG___ATCTTTCTCTGT______AC
11._MO 9___
___AA____________CC______CC____________
12._MO 9___
___AA____________CC______CC____________
13._MO 9___
___AA____________CC______CC____________
14._MO 9___
___AA____________CC______CC____________
15._MO 9___
___AA____________CC______CC____________
16._MO 9___
___AA____________CT______CT____________
17._MO 9___
__________________CT______CT____________
18._MO 9___
___AA____________CT______CT____________
19._MO 9___
___AA____________CT______CT____________
20._MO 9___
___AA____________CT______CT____________
21._MO 9___
____________CT___CC____________GGAA___
22._MO 9___
CCAAGGAG_________AAGG___AA_________
23._MO 9___
___AA____________CC______CC____________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1._MO 9___
TTCC_________ACGG______TTCTCTCGGG
2._MO 9___
GTCC_________ACAG______CTCTTTCGAA
3._MO 9___
GTCC_________ACAG______CTCTTTCGAA
4._MO 9___
GTCC_________ACAG______CTCTTTCGAA
5._MO 9___
TTCC_________ACGG______TTCTCTCGGG
6._MO 9___
TTCC_________ACGG______TTCTCTCGGG
7._MO 9___
TTCC_________ACGG______TTCTCTCGGG
8._MO 9___
TTCC_________ACGG______TTCTCTCGGG
9._MO 9___
GTCC_________ACAG______CTCTTTCGAA
10._MO 9___
GTCC_________ACAG______CTCTTTCGAA
11._MO 9___
TTCC_________AC_________TT___CTCGGG
12._MO 9___
TTCC_________AC_________TT___CTCGGG
13._MO 9___
TTCC_________AC_________TT___CTCGGG
14._MO 9___
TTCC_________AC_________TT___CTCGGG
15._MO 9___
TTCC_________AC_________TT___CTCGGG
16._MO 9___
GTCC_________AC_________CT___TTCGAA
17._MO 9___
GTCC_________AC_________CT___TTCGAA
18._MO 9___
GTCC_________AC_________CT___TTCGAA
19._MO 9___
GTCC_________AC_________CT___TTCGAA
20._MO 9___
GTCC_________AC_________CT___TTCGAA
21._MO 9___
TT___GGTT_________GGGG_________CG___
22._MO 9___
AAGG______GGACGG______AAAGAGCGGG
23._MO 9___
TTCC_________AC_________TT___CTCGGG
 127 128 129 130 131 132 133 134       
1._MO 9___
CC______CCGGCCAGACX_XX_XX_XX_XX_XX_X
2._MO 9___
CT______CCAAACGGACX_XX_XX_XX_XX_XX_X
3._MO 9___
CT______CCAAACGGACX_XX_XX_XX_XX_XX_X
4._MO 9___
CT______CCAAACGGACX_XX_XX_XX_XX_XX_X
5._MO 9___
CC______CCGGCCAGACX_XX_XX_XX_XX_XX_X
6._MO 9___
CC______CCGGCCAGACX_XX_XX_XX_XX_XX_X
7._MO 9___
CC______CCGGCCAGACX_XX_XX_XX_XX_XX_X
8._MO 9___
CC______CCGGCCAGACX_XX_XX_XX_XX_XX_X
9._MO 9___
CT______CCAAACGGACX_XX_XX_XX_XX_XX_X
10._MO 9___
CT______CCAAACGGACX_XX_XX_XX_XX_XX_X
11._MO 9___
CC_____________________X_XX_XX_XX_XX_XX_X
12._MO 9___
CC_____________________X_XX_XX_XX_XX_XX_X
13._MO 9___
CC_____________________X_XX_XX_XX_XX_XX_X
14._MO 9___
CC_____________________X_XX_XX_XX_XX_XX_X
15._MO 9___
CC_____________________X_XX_XX_XX_XX_XX_X
16._MO 9___
CT_____________________X_XX_XX_XX_XX_XX_X
17._MO 9___
CT_____________________X_XX_XX_XX_XX_XX_X
18._MO 9___
CT_____________________X_XX_XX_XX_XX_XX_X
19._MO 9___
CT_____________________X_XX_XX_XX_XX_XX_X
20._MO 9___
CT_____________________X_XX_XX_XX_XX_XX_X
21._MO 9___
___TTTT_______________X_XX_XX_XX_XX_XX_X
22._MO 9___
GG______CC___CCAGACX_XX_XX_XX_XX_XX_X
23._MO 9___
CC_____________________X_XX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._MO_9 GC-05-071-2-22

Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._MO_9 GC-05-071-2-22

Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

3._MO_9 GC-05-071-2-22

Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

4._MO_9 GC-05-071-2-22

Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

5._MO_9 GC-05-071-2-22

Location: Tree: 5
Notes: 5
 Mars, 2018

6._MO_9 GC-05-119-3-21

Location: Tree: 2
Notes: 2
 Mars, 2018

7._MO_9 GC-05-119-3-21

Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

8._MO_9 GC-05-119-3-21

Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

9._MO_9 GC-05-119-3-21

Location: Tree: 5
Notes: 5
 Mars, 2018

10._MO_9 GC-05-071-2-22

Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

11._MO_9

Location: 5222 5
 Dapeng Zhang, 2016

12._MO_9

Location: 5222 1 > FP
 Dapeng Zhang, 2016

13._MO_9

Location: 5321 2
 Dapeng Zhang, 2016

14._MO_9

Location: 5321 3 > FP
 Dapeng Zhang, 2016

15._MO_9

Location: 5321 4 > FP
 Dapeng Zhang, 2016

16._MO_9

Location: 5222 2 > FP
 Dapeng Zhang, 2016

17._MO_9

Location: 5222 2 > FP
 Dapeng Zhang, 2016

18._MO_9

Location: 5222 3 > FP
 Dapeng Zhang, 2016

19._MO_9

Location: 5222 4 > FP
 Dapeng Zhang, 2016

20._MO_9

Location: 5321 5
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

21._MO_9 RUQ 1691

 Lambert Motilal, 2023
Population Assignment: 

22._MO_9 RUQ 1691

Notes: Reading_Collection
 Mars, 2018

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

23._MO_9

Location: Marper D835
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1242 113TcSNP1253 114TcSNP1270 115TcSNP1275
116TcSNP1293 117TcSNP1309 118TcSNP1350 119TcSNP1383 120TcSNP1401
121TcSNP1404 122TcSNP1414 123TcSNP1439 124TcSNP1442 125TcSNP1458
126TcSNP1484 127TcSNP1520 128TcSNP1524 129TcSNP1527 130Tcm001s00947643
131Tcm002s20575712 132Tcm003s01336581 133Tcm003s07402719 134Tcm006s26664133