SNP Profiles of AMAZ 5 /2   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-03-008-1-08
______GGGGAA___GG______CCCTCCTT___
2. _GC-03-008-1-08
______GGGGAA___GG______CCCTCCTT___
3. _GC-03-008-1-08
______GGGGAA___GG______CCCTCCTT___
4. _GC-03-008-1-08
______GGGGAA___GG______CCCTCCTT___
5. _3108_2
______GG___AA___________________________
6. _3108_5
______GG___AA___________________________
7. _3108_8_>_FP
______GG___AA___________________________
8. _3108_9_>_FP
______GG___AA___________________________
9. _RUQ_93
CTAC_________TT___CCGG____________TT
10. _RUQ_93
______________________________CTCC______
11. _RUQ_93
______GG___AA___________________________
12. _4A_A20_T1
______GG___TT___________________________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-03-008-1-08
___AATTTTTTGG______AA___GGAAGGTT
2. _GC-03-008-1-08
___AATTTTTTGG______AA___GGAAGGTT
3. _GC-03-008-1-08
___AATTTTTTGG______AA___GGAAGGTT
4. _GC-03-008-1-08
___AATTTTTTGG______AA___GGAAGGTT
5. _3108_2
___AATTTT____________AA___GGAA___TT
6. _3108_5
___AATTTT____________AA___GGAA___TT
7. _3108_8_>_FP
___AATTTT____________AA___GGAA___TT
8. _3108_9_>_FP
___AATTTT____________AA___GGAA___TT
9. _RUQ_93
AAAA____________TTGG___GT___AA______
10. _RUQ_93
___AATTTT___GG______AA___GGAA___TT
11. _RUQ_93
___AATTTT____________AA___GGAA___TT
12. _4A_A20_T1
___CCTTCC____________AA___CCAA___CC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-03-008-1-08
______ATGG___GGAACCAA___GGATGGAA
2. _GC-03-008-1-08
______ATGG___GGAACCAA___GGATGGAA
3. _GC-03-008-1-08
______ATGG___GGAACCAA___GGATGGAA
4. _GC-03-008-1-08
______ATGG___GGAACCAA___GGATGGAA
5. _3108_2
__________________AA_________GG______AA
6. _3108_5
__________________AA_________GG______AA
7. _3108_8_>_FP
__________________AA_________GG______AA
8. _3108_9_>_FP
__________________AA_________GG______AA
9. _RUQ_93
TTAA___GGAC____________CC____________
10. _RUQ_93
_________GG___GGAA_______________GGAA
11. _RUQ_93
__________________AA_________GG______AA
12. _4A_A20_T1
__________________AA_________GG______AA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-03-008-1-08
___AC___CCCC___AAGGGGGG___AACTAA
2. _GC-03-008-1-08
___AC___CCCC___AAGGGGGG___AACTAA
3. _GC-03-008-1-08
___AC___CCCC___AAGGGGGG___AACTAA
4. _GC-03-008-1-08
___AC___CCCC___AAGGGGGG___AACTAA
5. _3108_2
_________CCCC______GG___GG___AA______
6. _3108_5
_________CCCC______GG___GG___AA______
7. _3108_8_>_FP
_________CCCC______GG___GG___AA______
8. _3108_9_>_FP
_________CCCC______GG___GG___AA______
9. _RUQ_93
AA___CCCC___AA_________GGTTAACT___
10. _RUQ_93
_________CCCC______GG___GG___AACT___
11. _RUQ_93
_________CCCC______GG___GG___AA______
12. _4A_A20_T1
_________CCTT______TT___CC___AA______
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-03-008-1-08
CT_________AAAA___AATTTTGGAA___TT
2. _GC-03-008-1-08
CT_________AAAA___AATTTTGGAA___TT
3. _GC-03-008-1-08
CT_________AAAA___AATTTTGGAA___TT
4. _GC-03-008-1-08
CT_________AAAA___AATTTTGGAA___TT
5. _3108_2
CT_________AA_______________GG_________
6. _3108_5
CT_________AA_______________GG_________
7. _3108_8_>_FP
CT_________AA_______________GG_________
8. _3108_9_>_FP
CT_________AA_______________GG_________
9. _RUQ_93
___TTGGCCAA___CG______TTGGAACC___
10. _RUQ_93
CT________________________TTGGAA______
11. _RUQ_93
CT_________AA_______________GG_________
12. _4A_A20_T1
TT_________AA_______________GG_________
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-03-008-1-08
TTTT___CC___CCAACCCCCTCCGGCCGG
2. _GC-03-008-1-08
TTTT___CC___CCAACCCCCTCCGGCCGG
3. _GC-03-008-1-08
TTTT___CC___CCAACCCCCTCCGGCCGG
4. _GC-03-008-1-08
TTTT___CC___CCAACCCCCTCCGGCCGG
5. _3108_2
_____________________CC___CT______CCGG
6. _3108_5
_____________________CC___CT______CCGG
7. _3108_8_>_FP
_____________________CC___CT______CCGG
8. _3108_9_>_FP
_____________________CC___CT______CCGG
9. _RUQ_93
______TTCCAATT___CC_________GG______
10. _RUQ_93
___TT___CC_________CCCCTT___GG______
11. _RUQ_93
_____________________CC___CT______CCGG
12. _4A_A20_T1
_____________________GG___CC______TTGG
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1. _GC-03-008-1-08
CC___AACCAACC______TTGG___CTAGGG
2. _GC-03-008-1-08
CC___AACCAACC______TTGG___CTAGGG
3. _GC-03-008-1-08
CC___AACCAACC______TTGG___CTAGGG
4. _GC-03-008-1-08
CC___AACCAACC______TTGG___CTAGGG
5. _3108_2
______AACCAA__________________CTAG___
6. _3108_5
______AACCAA__________________CTAG___
7. _3108_8_>_FP
______AACCAA__________________CTAG___
8. _3108_9_>_FP
______AACCAA__________________CTAG___
9. _RUQ_93
___CG______AACCCCAA______CC___AG___
10. _RUQ_93
____________AACC_______________CT___GG
11. _RUQ_93
______AACCAA__________________TTAG___
12. _4A_A20_T1
______AATTGG__________________CCAA___
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1. _GC-03-008-1-08
AACCGG___TTCCTTCTCCGG______ACTT
2. _GC-03-008-1-08
AACCGG___TTCCTTCTCCGG______ACTT
3. _GC-03-008-1-08
AACCGG___TTCCTTCTCCGG______ACTT
4. _GC-03-008-1-08
AACCGG___TTCCTTCTCCGG______ACTT
5. _3108_2
AA____________CC______CC____________TT
6. _3108_5
AA____________CC______CC____________TT
7. _3108_8_>_FP
AA____________CC______CC____________TT
8. _3108_9_>_FP
AA____________CC______CC____________TT
9. _RUQ_93
_________CT___CC____________GGAA___TT
10. _RUQ_93
______GG___TT________________________TT
11. _RUQ_93
AA____________CC______CC____________TT
12. _4A_A20_T1
AA____________TT______CC____________TT
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1. _GC-03-008-1-08
TT______TTAAGG______TTCCTTCCGGCC
2. _GC-03-008-1-08
TT______TTAAGG______TTCCTTCCGGCC
3. _GC-03-008-1-08
TT______TTAAGG______TTCCTTCCGGCC
4. _GC-03-008-1-08
TT______TTAAGG______TTCCTTCCGGCC
5. _3108_2
TT_________AA_________TT___TTCCGGCC
6. _3108_5
TT_________AA_________TT___TTCCGGCC
7. _3108_8_>_FP
TT_________AA_________TT___TTCCGGCC
8. _3108_9_>_FP
TT_________AA_________TT___TTCCGGCC
9. _RUQ_93
___GGAT_________GGGG_________CC______
10. _RUQ_93
_________TT_______________CCTTCCGG___
11. _RUQ_93
TT_________AA_________TT___TTCCGGCC
12. _4A_A20_T1
CC_________AA_________TT___CCGGAATT
 127 128 129 130 131 132 133        
1. _GC-03-008-1-08
______ACAGACAGCCX_XX_XX_XX_XX_XX_XX_X
2. _GC-03-008-1-08
______ACAGACAGCCX_XX_XX_XX_XX_XX_XX_X
3. _GC-03-008-1-08
______ACAGACAGCCX_XX_XX_XX_XX_XX_XX_X
4. _GC-03-008-1-08
______ACAGACAGCCX_XX_XX_XX_XX_XX_XX_X
5. _3108_2
_____________________X_XX_XX_XX_XX_XX_XX_X
6. _3108_5
_____________________X_XX_XX_XX_XX_XX_XX_X
7. _3108_8_>_FP
_____________________X_XX_XX_XX_XX_XX_XX_X
8. _3108_9_>_FP
_____________________X_XX_XX_XX_XX_XX_XX_X
9. _RUQ_93
TTAA_______________X_XX_XX_XX_XX_XX_XX_X
10. _RUQ_93
_____________________X_XX_XX_XX_XX_XX_XX_X
11. _RUQ_93
_____________________X_XX_XX_XX_XX_XX_XX_X
12. _4A_A20_T1
_____________________X_XX_XX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._AMAZ_5_/2 GC-03-008-1-08
Location: Tree: 2
Notes: 2
 Mars, 2018
2._AMAZ_5_/2 GC-03-008-1-08
Location: Tree: 5
Notes: 5
 Mars, 2018
3._AMAZ_5_/2 GC-03-008-1-08
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018
4._AMAZ_5_/2 GC-03-008-1-08
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018
5._AMAZ_5_/2
Location: 3108 2
 Dapeng Zhang, 2016
6._AMAZ_5_/2
Location: 3108 5
 Dapeng Zhang, 2016
7._AMAZ_5_/2
Location: 3108 8 > FP
 Dapeng Zhang, 2016
8._AMAZ_5_/2
Location: 3108 9 > FP
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

9._AMAZ_5_/2 RUQ 93
 Lambert Motilal, 2023
Population Assignment: 
10._AMAZ_5_/2 RUQ 93
 Dapeng Zhang, 2014
11._AMAZ_5_/2 RUQ 93
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

12._AMAZ_5_/2
Location: 4A A20 T1
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP519 44TcSNP521 45TcSNP522
46TcSNP529 47TcSNP534 48TcSNP546 49TcSNP547 50TcSNP560
51TcSNP561 52TcSNP577 53TcSNP589 54TcSNP591 55TcSNP602
56TcSNP606 57TcSNP619 58TcSNP640 59TcSNP642 60TcSNP644
61TcSNP645 62TcSNP653 63TcSNP660 64TcSNP689 65TcSNP701
66TcSNP702 67TcSNP723 68TcSNP731 69TcSNP739 70TcSNP751
71TcSNP776 72TcSNP799 73TcSNP800 74TcSNP823 75TcSNP835
76TcSNP836 77TcSNP860 78TcSNP872 79TcSNP878 80TcSNP891
81TcSNP894 82TcSNP899 83TcSNP917 84TcSNP929 85TcSNP944
86TcSNP945 87TcSNP953 88TcSNP994 89TcSNP998 90TcSNP999
91TcSNP1010 92TcSNP1019 93TcSNP1034 94TcSNP1041 95TcSNP1053
96TcSNP1060 97TcSNP1062 98TcSNP1063 99TcSNP1075 100TcSNP1096
101TcSNP1111 102TcSNP1112 103TcSNP1126 104TcSNP1144 105TcSNP1149
106TcSNP1156 107TcSNP1165 108TcSNP1175 109TcSNP1205 110TcSNP1230
111TcSNP1242 112TcSNP1253 113TcSNP1270 114TcSNP1275 115TcSNP1293
116TcSNP1309 117TcSNP1350 118TcSNP1383 119TcSNP1401 120TcSNP1404
121TcSNP1414 122TcSNP1439 123TcSNP1442 124TcSNP1458 125TcSNP1484
126TcSNP1520 127TcSNP1524 128TcSNP1527 129Tcm001s00947643 130Tcm002s20575712
131Tcm003s01336581 132Tcm003s07402719 133Tcm006s26664133