SNP Profiles of "ICS 40"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-01-106-6-03
GGGGATAGCTCTACCTACGTCTCCAGAC
2. _GC-01-106-6-03
GGGGATAGCTCTACCTACGTCTCCAG___
3. _GC-01-106-6-03
GGGGATAGCTCTACCTACGTCTATAGAC
4. _GC-01-106-6-03
GGGGATAGCTCTACCTACGTCTATAGAC
5. _GC-01-106-6-03
GGGGATAGCTCTACCTACGTCTATAGAC
6. _GC-01-106-6-03
GGGGATAGCCCTCCCTACGGTTATAGCC
7. _GC-01-106-6-03
GGGGATAGCTCTACCTACGTCTATAGAC
8. _GC-01-106-6-03
GGGGATAGCTCTACCTACGTCTATAGAC
9. _GC-01-106-6-03
GGGGATAGCTCTACCTACGTCTATAGAC
10. _1603_1
GG___AT_______________ACGTCT______AC
11. _1603_4
GG___AT_______________ACGTCT______AC
12. _1603_6
GG___AT_______________ACGTCT______AC
13. _1603_11
GG___AT_______________ACGTCT______AC
14. _1603_13
GG___AT_______________ACGTCT______AC
15. _1603_16
GG___AT_______________ACGTCT______AC
16. _1603_4_>_FP
GG___AT_______________ACGTCT______AC
17. _1603_6_>_FP
GG___AT_______________ACGTCT_________
18. _1603_9
GG___AT_______________ACGGTT______CC
19. _RUQ_1432
GGCCATAGAGAGACAGACACAGATAGAC
20. _RUQ_1432
_______________CTAC___ACGTCT___AGAC
21. _RUQ_1432
GG___AT_______________ACGTCT______AC
22. _C0201_2A
GG___AT_______________ACGTCT______AC
23. _San_Juan_Block2
GG___AT_______________ACGT_________AC
24. _6B_E287_T4
CG___TT_______________CCGTCC______AC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-01-106-6-03
CGAGCCCTATAGAGATCTAGGGATCGAG
2. _GC-01-106-6-03
CGAGCCCTATAGAGATCTAGGGATCGAG
3. _GC-01-106-6-03
CGAGGGCTATAGAGATCTAGGGATCGAG
4. _GC-01-106-6-03
CGAGGGCTATAGAGATCTAGGGATCGAG
5. _GC-01-106-6-03
CGAGGGCTATAGAGATCTAGGGATCGAG
6. _GC-01-106-6-03
CCAGGGCCATGGGGATCCAGAAAACGAG
7. _GC-01-106-6-03
CGAGGGCTATAGAGATCTAGGGATCGAG
8. _GC-01-106-6-03
CGAGGGCTATAGAGATCTAGGGATCGAG
9. _GC-01-106-6-03
CGAGGGCTATAGAGATCTAGGGATCGAG
10. _1603_1
CGAG___CT_________AT______GG______AG
11. _1603_4
CGAG___CT_________AT______GG______AG
12. _1603_6
CGAG___CT_________AT______GG______AG
13. _1603_11
CGAG___CT_________AT______GG______AG
14. _1603_13
CGAG___CT_________AT______GG______AG
15. _1603_16
CGAG___CT_________AT______GG______AG
16. _1603_4_>_FP
CGAG___CT_________AT______GG______AG
17. _1603_6_>_FP
CGAG___CT_________AT______GG______AG
18. _1603_9
CCAG___CC_________AT______AA______AG
19. _RUQ_1432
CGAGGGAGATAGAGATAGAGGGATCG___
20. _RUQ_1432
CGAG___CT___AGAGAT____________CGAG
21. _RUQ_1432
CGAG___CT_________AT______GG______AG
22. _C0201_2A
CGAG___CT_________AT______GG______AG
23. _San_Juan_Block2
___AG___CT__________________GG______AG
24. _6B_E287_T4
GGAA___TT_________AA______AG______AA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-01-106-6-03
CTCCCCCTGGGTAACCACCCAGCTGGAG
2. _GC-01-106-6-03
CTCCCCCTGGGTAACCACCCAGCTGGAG
3. _GC-01-106-6-03
___CCCCCTGGGTAACCACCCAGCTGGAG
4. _GC-01-106-6-03
___CCCCCTGGGTAACCACCCAGCTGGAG
5. _GC-01-106-6-03
___CCCCCTGGGTAACCACCCAGCTGGAG
6. _GC-01-106-6-03
___AAAACCAGGGGGGGCCCCAGTTAAAA
7. _GC-01-106-6-03
___CCCCCTGGGTAACCACCCAGCTGGAG
8. _GC-01-106-6-03
___CCCCCTGGGTAACCACCCAGCTGGAG
9. _GC-01-106-6-03
___CCCCCTGGGTAACCACCCAGCTGGAG
10. _1603_1
______CCCT___GT___CCAC______CTGG___
11. _1603_4
______CCCT___GT___CCAC______CTGG___
12. _1603_6
______CCCT___GT___CCAC______CTGG___
13. _1603_11
______CCCT___GT___CCAC______CTGG___
14. _1603_13
______CCCT___GT___CCAC______CTGG___
15. _1603_16
______CCCT___GT___CCAC______CTGG___
16. _1603_4_>_FP
______CCCT___GT___CCAC______CTGG___
17. _1603_6_>_FP
______CCCT___GT___CCAC______CTGG___
18. _1603_9
______AACC___GG___GGCC______TTAA___
19. _RUQ_1432
AGCCCC___GGACAACCACGG___AG___AG
20. _RUQ_1432
______CCCT___GT___CCAACC___CT______
21. _RUQ_1432
______CCCT___GT___CCAC______CTAG___
22. _C0201_2A
______CCCT___GT___CCAC______CTAG___
23. _San_Juan_Block2
______CCCT___GT___CC_________CTAG___
24. _6B_E287_T4
______ACCT___TT___CCCC______CTAA___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-01-106-6-03
AG___CTGTAG___GTGTCCGGAACGCGCC
2. _GC-01-106-6-03
AGCTCTGTAGGTGTGTCCGGAACGCGCC
3. _GC-01-106-6-03
AGCTCTGTAGGTGTGTCCGGAACGCGCC
4. _GC-01-106-6-03
AGCTCTGTAGGTGTGTCCGGAACGCGCC
5. _GC-01-106-6-03
AGCTCTGTAGGTGTGTCCGGAACGCGCC
6. _GC-01-106-6-03
AGCTTTGTAGTTGTTTACCCAACCCGTT
7. _GC-01-106-6-03
AGCTCTGTAGGTGTGTCCGGAACGCGCC
8. _GC-01-106-6-03
AGCTCTGTAGGTGTGTCCGGAACGCGCC
9. _GC-01-106-6-03
AGCTCTGTAGGTGTGTCCGGAACGCGCC
10. _1603_1
_________GT_____________________CG___CC
11. _1603_4
_________GT_____________________CG___CC
12. _1603_6
_________GT_____________________CG___CC
13. _1603_11
_________GT_____________________CG___CC
14. _1603_13
_________GT_____________________CG___CC
15. _1603_16
_________GT_____________________CG___CC
16. _1603_4_>_FP
_________GT_____________________CG___CC
17. _1603_6_>_FP
_________GT_____________________CG___CC
18. _1603_9
_________GT_____________________CC___TT
19. _RUQ_1432
AG______ACAGACACACCCCCAGCG___GG
20. _RUQ_1432
______CTGTAG______GTCC______CGCGCC
21. _RUQ_1432
_________GT_____________________CG___CC
22. _C0201_2A
_________GT_____________________CG___CC
23. _San_Juan_Block2
_________GT_____________________CG___CC
24. _6B_E287_T4
_________GG_____________________CG___CC
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-01-106-6-03
CCGGTTGGCTAA___AACTCTCCCTAAGT
2. _GC-01-106-6-03
CCGGTTGGCTAACTAACTCTCCCTAAGT
3. _GC-01-106-6-03
CCGGTTGGCTAACTAACTCTCCCTAAGT
4. _GC-01-106-6-03
CCGGTTGGCTAACTAACTCTCCCTAAGT
5. _GC-01-106-6-03
CCGGTTGGCTAACTAACTCTCCCTAAGT
6. _GC-01-106-6-03
CCGGCTGGCCATCTAACCTTCCCCGGGG
7. _GC-01-106-6-03
CCGGTTGGCTAACTAACTCTCCCTAAGT
8. _GC-01-106-6-03
CCGGTTGGCTAACTAACTCTCCCTAAGT
9. _GC-01-106-6-03
CCGGTTGGCTAACTAACTCTCCCTAAGT
10. _1603_1
______TTGG___AACTAA_________CTAA___
11. _1603_4
______TTGG___AACTAA_________CTAA___
12. _1603_6
______TTGG___AACTAA_________CTAA___
13. _1603_11
______TTGG___AACTAA_________CTAA___
14. _1603_13
______TTGG___AACTAA_________CTAA___
15. _1603_16
______TTGG___AACTAA_________CTAA___
16. _1603_4_>_FP
______TTGG___AA___AA_________CTAA___
17. _1603_6_>_FP
______TTGG___AACTAA_________CTAA___
18. _1603_9
______CTGG___ATCTAA_________CCGG___
19. _RUQ_1432
GGGGAAGGAGAAAGAA___AG___AGAAAC
20. _RUQ_1432
___-_______________AA-______CT___GT
21. _RUQ_1432
______TTGG___AACTAA_________CTAA___
22. _C0201_2A
______TTGG___AACTAA_________CTAA___
23. _San_Juan_Block2
______TTGG___AACTAA_________CTAA___
24. _6B_E287_T4
______CTCG___AACTAA_________CCGG___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-01-106-6-03
AACCAG___CTTTTTCTGTCCGTCCTTAA
2. _GC-01-106-6-03
AACCAGATCTTTTTCTGTCCGTCCTTAA
3. _GC-01-106-6-03
AACCAGATCTTTTTCTGTCCGTCCTTAA
4. _GC-01-106-6-03
AACCAGATCTTTTTCTGTCCGTCCTTAA
5. _GC-01-106-6-03
AACCAGATCTTTTTCTGTCCGTCCTTAA
6. _GC-01-106-6-03
AATTGGTTCCCTCCTTGTACGGCTTTAC
7. _GC-01-106-6-03
AACCAGATCTTTTTCTGTCCGTCCTTAA
8. _GC-01-106-6-03
AACCAGATCTTTTTCTGTCCGTCCTTAA
9. _GC-01-106-6-03
AACCAGATCTTTTTCTGTCC___CCTTAA
10. _1603_1
AA_________CT______CT______GTCC___AA
11. _1603_4
AA_________CT______CT______GTCC___AA
12. _1603_6
AA_________CT______CT______GTCC___AA
13. _1603_11
AA_________CT______CT______GTCC___AA
14. _1603_13
AA_________CT______CT______GTCC___AA
15. _1603_16
AA_________CT______CT_________CC___AA
16. _1603_4_>_FP
AA_________CT______CT______GTCC___AA
17. _1603_6_>_FP
AA_________CT______CT______GTCC___AA
18. _1603_9
AA_________CC______TT______GGCT___AC
19. _RUQ_1432
AAGGAG______AAAA___AC___AAGGAGAA
20. _RUQ_1432
______AGAT__________________GT___CT___
21. _RUQ_1432
AA_________CT______CT______GTCC___AA
22. _C0201_2A
AA_________CT______CT______GTCC___AA
23. _San_Juan_Block2
AA_________CT______CT______GT______AA
24. _6B_E287_T4
AA_________CC______CC______GTCT___AC
 85 86 87 88 89 90 91 92 93 94 95 96   
1. _GC-01-106-6-03
GGTTCTCTCGAGCTACAGCCAGAAX_XX_X
2. _GC-01-106-6-03
GGTTCTCTCGAGCTACAGCCAGAAX_XX_X
3. _GC-01-106-6-03
GGTTCTCTCGAGCTACAGCCAGAAX_XX_X
4. _GC-01-106-6-03
GGTTCTCTCGAGCTACAGCCAGAAX_XX_X
5. _GC-01-106-6-03
GGTTCTCTCGAGCTACAGCCAGAAX_XX_X
6. _GC-01-106-6-03
GGCTCCTTCCGGCCACAAACAGCCX_XX_X
7. _GC-01-106-6-03
GGTTCTCTCGAGCTACAGCCAGAAX_XX_X
8. _GC-01-106-6-03
GGTTCTCTCGAGCTACAGCCAGAAX_XX_X
9. _GC-01-106-6-03
GGTTCTCTCGAGCTACAGCCAGAAX_XX_X
10. _1603_1
___TT___CTCGAGCT_______________X_XX_X
11. _1603_4
___TT___CTCGAGCT_______________X_XX_X
12. _1603_6
___TT___CTCGAGCT_______________X_XX_X
13. _1603_11
___TT___CTCGAGCT_______________X_XX_X
14. _1603_13
___TT___CTCGAGCT_______________X_XX_X
15. _1603_16
___TT___CTCGAGCT_______________X_XX_X
16. _1603_4_>_FP
___TT___CTCGAGCT_______________X_XX_X
17. _1603_6_>_FP
___TT___CTCGAGCT_______________X_XX_X
18. _1603_9
___CT___TTCCGGCC_______________X_XX_X
19. _RUQ_1432
GGAAAGAGCCAGAGAC___CCAGAAX_XX_X
20. _RUQ_1432
______CTCTCGAG__________________X_XX_X
21. _RUQ_1432
___CT___CTCGAGCT_______________X_XX_X
22. _C0201_2A
___TT___CTGGAGCT_______________X_XX_X
23. _San_Juan_Block2
___TT___CTGG_____________________X_XX_X
24. _6B_E287_T4
___CT___TTGGGGCC_______________X_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._ICS_40 GC-01-106-6-03
Location: Field: 1, Block: 6, Rep: 3, Tree: PL4
Notes: PL4 FP3
 Mars, 2018
2._ICS_40 GC-01-106-6-03
Location: Field: 1, Block: 6, Rep: 3, Tree: PL6
Notes: PL6 FP4
 Mars, 2018
3._ICS_40 GC-01-106-6-03
Location: Tree: 1
Notes: 1
 Mars, 2018
4._ICS_40 GC-01-106-6-03
Location: Tree: 4
Notes: Dead
 Mars, 2018
5._ICS_40 GC-01-106-6-03
Location: Tree: 6
Notes: Dead
 Mars, 2018
6._ICS_40 GC-01-106-6-03
Location: Tree: 9
Notes: 9
 Mars, 2018
7._ICS_40 GC-01-106-6-03
Location: Tree: 11
Notes: 11
 Mars, 2018
8._ICS_40 GC-01-106-6-03
Location: Tree: 13
Notes: 13
 Mars, 2018
9._ICS_40 GC-01-106-6-03
Location: Tree: 16
Notes: 16
 Mars, 2018
10._ICS_40
Location: 1603 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
11._ICS_40
Location: 1603 4
 Dapeng Zhang, 2016
12._ICS_40
Location: 1603 6
 Dapeng Zhang, 2016
13._ICS_40
Location: 1603 11
 Dapeng Zhang, 2016
14._ICS_40
Location: 1603 13
 Dapeng Zhang, 2016
15._ICS_40
Location: 1603 16
 Dapeng Zhang, 2016
16._ICS_40
Location: 1603 4 > FP
 Dapeng Zhang, 2016
17._ICS_40
Location: 1603 6 > FP
 Dapeng Zhang, 2016
18._ICS_40
Location: 1603 9
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

19._ICS_40 RUQ 1432
Notes: Reading_Collection
 Mars, 2018
20._ICS_40 RUQ 1432
 Dapeng Zhang, 2014
21._ICS_40 RUQ 1432
 Dapeng Zhang, 2016

Malaysian Cocoa Board (MCB) Malaysia

22._ICS_40
Location: C0201 2A
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

23._ICS_40
Location: San Juan Block2
 Dapeng Zhang, 2016
24._ICS_40
Location: 6B E287 T4
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP497 30TcSNP521
31TcSNP529 32TcSNP534 33TcSNP547 34TcSNP560 35TcSNP561
36TcSNP577 37TcSNP591 38TcSNP602 39TcSNP606 40TcSNP619
41TcSNP645 42TcSNP653 43TcSNP689 44TcSNP701 45TcSNP702
46TcSNP723 47TcSNP731 48TcSNP751 49TcSNP776 50TcSNP799
51TcSNP823 52TcSNP836 53TcSNP860 54TcSNP872 55TcSNP878
56TcSNP891 57TcSNP894 58TcSNP899 59TcSNP917 60TcSNP929
61TcSNP944 62TcSNP953 63TcSNP994 64TcSNP998 65TcSNP999
66TcSNP1034 67TcSNP1041 68TcSNP1060 69TcSNP1062 70TcSNP1063
71TcSNP1075 72TcSNP1096 73TcSNP1111 74TcSNP1126 75TcSNP1144
76TcSNP1149 77TcSNP1156 78TcSNP1165 79TcSNP1175 80TcSNP1242
81TcSNP1253 82TcSNP1270 83TcSNP1309 84TcSNP1350 85TcSNP1383
86TcSNP1414 87TcSNP1439 88TcSNP1442 89TcSNP1458 90TcSNP1484
91TcSNP1520 92Tcm001s00947643 93Tcm002s20575712 94Tcm003s01336581 95Tcm003s07402719
96Tcm006s26664133