SNP Profiles of ICS 40   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-01-106-6-03
______GGGGAT___AG______CTCTACCT___
2. _GC-01-106-6-03
______GGGGAT___AG______CTCTACCT___
3. _GC-01-106-6-03
______GGGGAT___AG______CTCTACCT___
4. _GC-01-106-6-03
______GGGGAT___AG______CTCTACCT___
5. _GC-01-106-6-03
______GGGGAT___AG______CTCTACCT___
6. _GC-01-106-6-03
______GGGGAT___AG______CCCTCCCT___
7. _GC-01-106-6-03
______GGGGAT___AG______CTCTACCT___
8. _GC-01-106-6-03
______GGGGAT___AG______CTCTACCT___
9. _GC-01-106-6-03
______GGGGAT___AG______CTCTACCT___
10. _1603_1
______GG___AT___________________________
11. _1603_4
______GG___AT___________________________
12. _1603_6
______GG___AT___________________________
13. _1603_11
______GG___AT___________________________
14. _1603_13
______GG___AT___________________________
15. _1603_16
______GG___AT___________________________
16. _1603_4_>_FP
______GG___AT___________________________
17. _1603_6_>_FP
______GG___AT___________________________
18. _1603_9
______GG___AT___________________________
19. _RUQ_1432
TTAC_________CT___CCGG____________GT
20. _RUQ_1432
______GGCCAT___AG______AGAGACAG___
21. _RUQ_1432
______________________________CTAC______
22. _RUQ_1432
______GG___AT___________________________
23. _C0201_2A
______GG___AT___________________________
24. _San_Juan_Block2
______GG___AT___________________________
25. _6B_E287_T4
______CG___TT___________________________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-01-106-6-03
___ACGTCTCCAG______AC___CGAGCCCT
2. _GC-01-106-6-03
___ACGTCTCCAG____________CGAGCCCT
3. _GC-01-106-6-03
___ACGTCTATAG______AC___CGAGGGCT
4. _GC-01-106-6-03
___ACGTCTATAG______AC___CGAGGGCT
5. _GC-01-106-6-03
___ACGTCTATAG______AC___CGAGGGCT
6. _GC-01-106-6-03
___ACGGTTATAG______CC___CCAGGGCC
7. _GC-01-106-6-03
___ACGTCTATAG______AC___CGAGGGCT
8. _GC-01-106-6-03
___ACGTCTATAG______AC___CGAGGGCT
9. _GC-01-106-6-03
___ACGTCTATAG______AC___CGAGGGCT
10. _1603_1
___ACGTCT____________AC___CGAG___CT
11. _1603_4
___ACGTCT____________AC___CGAG___CT
12. _1603_6
___ACGTCT____________AC___CGAG___CT
13. _1603_11
___ACGTCT____________AC___CGAG___CT
14. _1603_13
___ACGTCT____________AC___CGAG___CT
15. _1603_16
___ACGTCT____________AC___CGAG___CT
16. _1603_4_>_FP
___ACGTCT____________AC___CGAG___CT
17. _1603_6_>_FP
___ACGTCT__________________CGAG___CT
18. _1603_9
___ACGGTT____________CC___CCAG___CC
19. _RUQ_1432
ATAC____________CTAG___GT___AG______
20. _RUQ_1432
___ACACAGATAG______AC___CGAGGGAG
21. _RUQ_1432
___ACGTCT___AG______AC___CGAG___CT
22. _RUQ_1432
___ACGTCT____________AC___CGAG___CT
23. _C0201_2A
___ACGTCT____________AC___CGAG___CT
24. _San_Juan_Block2
___ACGT_______________AC______AG___CT
25. _6B_E287_T4
___CCGTCC____________AC___GGAA___TT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-01-106-6-03
______ATAG___AGATCTAG___GGATCGAG
2. _GC-01-106-6-03
______ATAG___AGATCTAG___GGATCGAG
3. _GC-01-106-6-03
______ATAG___AGATCTAG___GGATCGAG
4. _GC-01-106-6-03
______ATAG___AGATCTAG___GGATCGAG
5. _GC-01-106-6-03
______ATAG___AGATCTAG___GGATCGAG
6. _GC-01-106-6-03
______ATGG___GGATCCAG___AAAACGAG
7. _GC-01-106-6-03
______ATAG___AGATCTAG___GGATCGAG
8. _GC-01-106-6-03
______ATAG___AGATCTAG___GGATCGAG
9. _GC-01-106-6-03
______ATAG___AGATCTAG___GGATCGAG
10. _1603_1
__________________AT_________GG______AG
11. _1603_4
__________________AT_________GG______AG
12. _1603_6
__________________AT_________GG______AG
13. _1603_11
__________________AT_________GG______AG
14. _1603_13
__________________AT_________GG______AG
15. _1603_16
__________________AT_________GG______AG
16. _1603_4_>_FP
__________________AT_________GG______AG
17. _1603_6_>_FP
__________________AT_________GG______AG
18. _1603_9
__________________AT_________AA______AG
19. _RUQ_1432
TTAC___AGAC____________CC____________
20. _RUQ_1432
______ATAG___AGATAGAG___GGATCG___
21. _RUQ_1432
_________AG___AGAT_______________CGAG
22. _RUQ_1432
__________________AT_________GG______AG
23. _C0201_2A
__________________AT_________GG______AG
24. _San_Juan_Block2
______________________________GG______AG
25. _6B_E287_T4
__________________AA_________AG______AA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-01-106-6-03
CT___CC___CCCT___GGGTAACC___ACCC
2. _GC-01-106-6-03
CT___CC___CCCT___GGGTAACC___ACCC
3. _GC-01-106-6-03
______CC___CCCT___GGGTAACC___ACCC
4. _GC-01-106-6-03
______CC___CCCT___GGGTAACC___ACCC
5. _GC-01-106-6-03
______CC___CCCT___GGGTAACC___ACCC
6. _GC-01-106-6-03
______AA___AACC___AGGGGGGG___CCCC
7. _GC-01-106-6-03
______CC___CCCT___GGGTAACC___ACCC
8. _GC-01-106-6-03
______CC___CCCT___GGGTAACC___ACCC
9. _GC-01-106-6-03
______CC___CCCT___GGGTAACC___ACCC
10. _1603_1
____________CCCT______GT___CC___AC___
11. _1603_4
____________CCCT______GT___CC___AC___
12. _1603_6
____________CCCT______GT___CC___AC___
13. _1603_11
____________CCCT______GT___CC___AC___
14. _1603_13
____________CCCT______GT___CC___AC___
15. _1603_16
____________CCCT______GT___CC___AC___
16. _1603_4_>_FP
____________CCCT______GT___CC___AC___
17. _1603_6_>_FP
____________CCCT______GT___CC___AC___
18. _1603_9
____________AACC______GG___GG___CC___
19. _RUQ_1432
___AC___CTCC___AG_________CCATACCC
20. _RUQ_1432
AG___CC___CC______GGACAACC___ACGG
21. _RUQ_1432
____________CCCT______GT___CC___AACC
22. _RUQ_1432
____________CCCT______GT___CC___AC___
23. _C0201_2A
____________CCCT______GT___CC___AC___
24. _San_Juan_Block2
____________CCCT______GT___CC_________
25. _6B_E287_T4
____________ACCT______TT___CC___CC___
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-01-106-6-03
AGCT_________GGAG___AG___CTGTAG___
2. _GC-01-106-6-03
AGCT_________GGAG___AGCTCTGTAG___
3. _GC-01-106-6-03
AGCT_________GGAG___AGCTCTGTAG___
4. _GC-01-106-6-03
AGCT_________GGAG___AGCTCTGTAG___
5. _GC-01-106-6-03
AGCT_________GGAG___AGCTCTGTAG___
6. _GC-01-106-6-03
AGTT_________AAAA___AGCTTTGTAG___
7. _GC-01-106-6-03
AGCT_________GGAG___AGCTCTGTAG___
8. _GC-01-106-6-03
AGCT_________GGAG___AGCTCTGTAG___
9. _GC-01-106-6-03
AGCT_________GGAG___AGCTCTGTAG___
10. _1603_1
___CT_________GG_______________GT______
11. _1603_4
___CT_________GG_______________GT______
12. _1603_6
___CT_________GG_______________GT______
13. _1603_11
___CT_________GG_______________GT______
14. _1603_13
___CT_________GG_______________GT______
15. _1603_16
___CT_________GG_______________GT______
16. _1603_4_>_FP
___CT_________GG_______________GT______
17. _1603_6_>_FP
___CT_________GG_______________GT______
18. _1603_9
___TT_________AA_______________GT______
19. _RUQ_1432
______TTAGCGAG___CG______CTGTAGCT
20. _RUQ_1432
___AG____________AG___AG______ACAG___
21. _RUQ_1432
___CT________________________CTGTAG___
22. _RUQ_1432
___CT_________AG_______________GT______
23. _C0201_2A
___CT_________AG_______________GT______
24. _San_Juan_Block2
___CT_________AG_______________GT______
25. _6B_E287_T4
___CT_________AA_______________GG______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-01-106-6-03
___GTGT___CC___GGAACGCGCCCCGGTT
2. _GC-01-106-6-03
GTGTGT___CC___GGAACGCGCCCCGGTT
3. _GC-01-106-6-03
GTGTGT___CC___GGAACGCGCCCCGGTT
4. _GC-01-106-6-03
GTGTGT___CC___GGAACGCGCCCCGGTT
5. _GC-01-106-6-03
GTGTGT___CC___GGAACGCGCCCCGGTT
6. _GC-01-106-6-03
TTGTTT___AC___CCAACCCGTTCCGGCT
7. _GC-01-106-6-03
GTGTGT___CC___GGAACGCGCCCCGGTT
8. _GC-01-106-6-03
GTGTGT___CC___GGAACGCGCCCCGGTT
9. _GC-01-106-6-03
GTGTGT___CC___GGAACGCGCCCCGGTT
10. _1603_1
________________________CG___CC______TT
11. _1603_4
________________________CG___CC______TT
12. _1603_6
________________________CG___CC______TT
13. _1603_11
________________________CG___CC______TT
14. _1603_13
________________________CG___CC______TT
15. _1603_16
________________________CG___CC______TT
16. _1603_4_>_FP
________________________CG___CC______TT
17. _1603_6_>_FP
________________________CG___CC______TT
18. _1603_9
________________________CC___TT______CT
19. _RUQ_1432
_________CTCCAATT___CG_________GG___
20. _RUQ_1432
ACACAC___CC___CCAGCG___GGGGGGAA
21. _RUQ_1432
______GT___CC_________CGCGCC_________
22. _RUQ_1432
________________________CG___CC______TT
23. _C0201_2A
________________________CG___CC______TT
24. _San_Juan_Block2
________________________CG___CC______TT
25. _6B_E287_T4
________________________CG___CC______CT
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1. _GC-01-106-6-03
GGCT___AA___AACT______CTCC___CTAA
2. _GC-01-106-6-03
GGCT___AACTAACT______CTCC___CTAA
3. _GC-01-106-6-03
GGCT___AACTAACT______CTCC___CTAA
4. _GC-01-106-6-03
GGCT___AACTAACT______CTCC___CTAA
5. _GC-01-106-6-03
GGCT___AACTAACT______CTCC___CTAA
6. _GC-01-106-6-03
GGCC___ATCTAACC______TTCC___CCGG
7. _GC-01-106-6-03
GGCT___AACTAACT______CTCC___CTAA
8. _GC-01-106-6-03
GGCT___AACTAACT______CTCC___CTAA
9. _GC-01-106-6-03
GGCT___AACTAACT______CTCC___CTAA
10. _1603_1
GG______AACTAA__________________CTAA
11. _1603_4
GG______AACTAA__________________CTAA
12. _1603_6
GG______AACTAA__________________CTAA
13. _1603_11
GG______AACTAA__________________CTAA
14. _1603_13
GG______AACTAA__________________CTAA
15. _1603_16
GG______AACTAA__________________CTAA
16. _1603_4_>_FP
GG______AA___AA__________________CTAA
17. _1603_6_>_FP
GG______AACTAA__________________CTAA
18. _1603_9
GG______ATCTAA__________________CCGG
19. _RUQ_1432
______CG______AACTCTAT______CC___AA
20. _RUQ_1432
GGAG___AAAGAA_________AG______AGAA
21. _RUQ_1432
_______________AA__________________CT___
22. _RUQ_1432
GG______AACTAA__________________CTAA
23. _C0201_2A
GG______AACTAA__________________CTAA
24. _San_Juan_Block2
GG______AACTAA__________________CTAA
25. _6B_E287_T4
CG______AACTAA__________________CCGG
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1. _GC-01-106-6-03
GTAACCAG______CTTTTTCTGT______CC
2. _GC-01-106-6-03
GTAACCAG___ATCTTTTTCTGT______CC
3. _GC-01-106-6-03
GTAACCAG___ATCTTTTTCTGT______CC
4. _GC-01-106-6-03
GTAACCAG___ATCTTTTTCTGT______CC
5. _GC-01-106-6-03
GTAACCAG___ATCTTTTTCTGT______CC
6. _GC-01-106-6-03
GGAATTGG___TTCCCTCCTTGT______AC
7. _GC-01-106-6-03
GTAACCAG___ATCTTTTTCTGT______CC
8. _GC-01-106-6-03
GTAACCAG___ATCTTTTTCTGT______CC
9. _GC-01-106-6-03
GTAACCAG___ATCTTTTTCTGT______CC
10. _1603_1
___AA____________CT______CT____________
11. _1603_4
___AA____________CT______CT____________
12. _1603_6
___AA____________CT______CT____________
13. _1603_11
___AA____________CT______CT____________
14. _1603_13
___AA____________CT______CT____________
15. _1603_16
___AA____________CT______CT____________
16. _1603_4_>_FP
___AA____________CT______CT____________
17. _1603_6_>_FP
___AA____________CT______CT____________
18. _1603_9
___AA____________CC______TT____________
19. _RUQ_1432
____________TT___CT____________GTAC___
20. _RUQ_1432
ACAAGGAG_________AAAA___AC_________
21. _RUQ_1432
GT______AG___AT________________________
22. _RUQ_1432
___AA____________CT______CT____________
23. _C0201_2A
___AA____________CT______CT____________
24. _San_Juan_Block2
___AA____________CT______CT____________
25. _6B_E287_T4
___AA____________CC______CC____________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1. _GC-01-106-6-03
GTCC______TTAAGG______TTCTCTCGAG
2. _GC-01-106-6-03
GTCC______TTAAGG______TTCTCTCGAG
3. _GC-01-106-6-03
GTCC______TTAAGG______TTCTCTCGAG
4. _GC-01-106-6-03
GTCC______TTAAGG______TTCTCTCGAG
5. _GC-01-106-6-03
GTCC______TTAAGG______TTCTCTCGAG
6. _GC-01-106-6-03
GGCT______TTACGG______CTCCTTCCGG
7. _GC-01-106-6-03
GTCC______TTAAGG______TTCTCTCGAG
8. _GC-01-106-6-03
GTCC______TTAAGG______TTCTCTCGAG
9. _GC-01-106-6-03
___CC______TTAAGG______TTCTCTCGAG
10. _1603_1
GTCC_________AA_________TT___CTCGAG
11. _1603_4
GTCC_________AA_________TT___CTCGAG
12. _1603_6
GTCC_________AA_________TT___CTCGAG
13. _1603_11
GTCC_________AA_________TT___CTCGAG
14. _1603_13
GTCC_________AA_________TT___CTCGAG
15. _1603_16
___CC_________AA_________TT___CTCGAG
16. _1603_4_>_FP
GTCC_________AA_________TT___CTCGAG
17. _1603_6_>_FP
GTCC_________AA_________TT___CTCGAG
18. _1603_9
GGCT_________AC_________CT___TTCCGG
19. _RUQ_1432
GT___GTTT_________GGGG_________CG___
20. _RUQ_1432
AAGG______AGAAGG______AAAGAGCCAG
21. _RUQ_1432
GT_________CT_______________CTCTCGAG
22. _RUQ_1432
GTCC_________AA_________CT___CTCGAG
23. _C0201_2A
GTCC_________AA_________TT___CTGGAG
24. _San_Juan_Block2
GT____________AA_________TT___CTGG___
25. _6B_E287_T4
GTCT_________AC_________CT___TTGGGG
 127 128 129 130 131 132 133 134       
1. _GC-01-106-6-03
CT______ACAGCCAGAAX_XX_XX_XX_XX_XX_X
2. _GC-01-106-6-03
CT______ACAGCCAGAAX_XX_XX_XX_XX_XX_X
3. _GC-01-106-6-03
CT______ACAGCCAGAAX_XX_XX_XX_XX_XX_X
4. _GC-01-106-6-03
CT______ACAGCCAGAAX_XX_XX_XX_XX_XX_X
5. _GC-01-106-6-03
CT______ACAGCCAGAAX_XX_XX_XX_XX_XX_X
6. _GC-01-106-6-03
CC______ACAAACAGCCX_XX_XX_XX_XX_XX_X
7. _GC-01-106-6-03
CT______ACAGCCAGAAX_XX_XX_XX_XX_XX_X
8. _GC-01-106-6-03
CT______ACAGCCAGAAX_XX_XX_XX_XX_XX_X
9. _GC-01-106-6-03
CT______ACAGCCAGAAX_XX_XX_XX_XX_XX_X
10. _1603_1
CT_____________________X_XX_XX_XX_XX_XX_X
11. _1603_4
CT_____________________X_XX_XX_XX_XX_XX_X
12. _1603_6
CT_____________________X_XX_XX_XX_XX_XX_X
13. _1603_11
CT_____________________X_XX_XX_XX_XX_XX_X
14. _1603_13
CT_____________________X_XX_XX_XX_XX_XX_X
15. _1603_16
CT_____________________X_XX_XX_XX_XX_XX_X
16. _1603_4_>_FP
CT_____________________X_XX_XX_XX_XX_XX_X
17. _1603_6_>_FP
CT_____________________X_XX_XX_XX_XX_XX_X
18. _1603_9
CC_____________________X_XX_XX_XX_XX_XX_X
19. _RUQ_1432
___CTAT_______________X_XX_XX_XX_XX_XX_X
20. _RUQ_1432
AG______AC___CCAGAAX_XX_XX_XX_XX_XX_X
21. _RUQ_1432
________________________X_XX_XX_XX_XX_XX_X
22. _RUQ_1432
CT_____________________X_XX_XX_XX_XX_XX_X
23. _C0201_2A
CT_____________________X_XX_XX_XX_XX_XX_X
24. _San_Juan_Block2
________________________X_XX_XX_XX_XX_XX_X
25. _6B_E287_T4
CC_____________________X_XX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._ICS_40 GC-01-106-6-03
Location: Field: 1, Block: 6, Rep: 3, Tree: PL4
Notes: PL4 FP3
 Mars, 2018
2._ICS_40 GC-01-106-6-03
Location: Field: 1, Block: 6, Rep: 3, Tree: PL6
Notes: PL6 FP4
 Mars, 2018
3._ICS_40 GC-01-106-6-03
Location: Tree: 1
Notes: 1
 Mars, 2018
4._ICS_40 GC-01-106-6-03
Location: Tree: 4
Notes: Dead
 Mars, 2018
5._ICS_40 GC-01-106-6-03
Location: Tree: 6
Notes: Dead
 Mars, 2018
6._ICS_40 GC-01-106-6-03
Location: Tree: 9
Notes: 9
 Mars, 2018
7._ICS_40 GC-01-106-6-03
Location: Tree: 11
Notes: 11
 Mars, 2018
8._ICS_40 GC-01-106-6-03
Location: Tree: 13
Notes: 13
 Mars, 2018
9._ICS_40 GC-01-106-6-03
Location: Tree: 16
Notes: 16
 Mars, 2018
10._ICS_40
Location: 1603 1
 Dapeng Zhang, 2016
11._ICS_40
Location: 1603 4
 Dapeng Zhang, 2016
12._ICS_40
Location: 1603 6
 Dapeng Zhang, 2016
13._ICS_40
Location: 1603 11
 Dapeng Zhang, 2016
14._ICS_40
Location: 1603 13
 Dapeng Zhang, 2016
15._ICS_40
Location: 1603 16
 Dapeng Zhang, 2016
16._ICS_40
Location: 1603 4 > FP
 Dapeng Zhang, 2016
17._ICS_40
Location: 1603 6 > FP
 Dapeng Zhang, 2016
18._ICS_40
Location: 1603 9
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

19._ICS_40 RUQ 1432
 Lambert Motilal, 2023
Population Assignment: 
20._ICS_40 RUQ 1432
Notes: Reading_Collection
 Mars, 2018
21._ICS_40 RUQ 1432
 Dapeng Zhang, 2014
22._ICS_40 RUQ 1432
 Dapeng Zhang, 2016

Malaysian Cocoa Board (MCB) Malaysia

23._ICS_40
Location: C0201 2A
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

24._ICS_40
Location: San Juan Block2
 Dapeng Zhang, 2016
25._ICS_40
Location: 6B E287 T4
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1242 113TcSNP1253 114TcSNP1270 115TcSNP1275
116TcSNP1293 117TcSNP1309 118TcSNP1350 119TcSNP1383 120TcSNP1401
121TcSNP1404 122TcSNP1414 123TcSNP1439 124TcSNP1442 125TcSNP1458
126TcSNP1484 127TcSNP1520 128TcSNP1524 129TcSNP1527 130Tcm001s00947643
131Tcm002s20575712 132Tcm003s01336581 133Tcm003s07402719 134Tcm006s26664133