SNP Profiles of "EET 399 [ECU]"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-04-047-3-11
______GGGGAT___AG______CCCTCCTT___
2. _GC-04-047-3-11
______GGGGAT___AG______CCCTCCTT___
3. _GC-04-047-3-11
______GGGGAT___AG______CCCTCCTT___
4. _GC-04-047-3-11
______GGGGAT___AG______CCCTCCTT___
5. _GC-04-047-3-11
______GGGGAT___AG______CCCTCCTT___
6. _GC-04-047-3-11
______GGGGAT___AG______CCCTCCTT___
7. _GC-04-047-3-11
______GGGGAT___AG______CCCTCCTT___
8. _4311_1
______GG___AT___________________________
9. _4311_2
______GG___AT___________________________
10. _4311_3_>_FP
______GG___AT___________________________
11. _4311_5_>_FP
______GG___AT___________________________
12. _4311_6_>_FP
______GG___AT___________________________
13. _4311_8_>_FP
______GG___AT___________________________
14. _4311_3_>_FP
______GG___AT___________________________
15. _RUQ_745
TTAC_________CC___ACGG____________GG
16. _RUQ_745B
CTAA_________TT___CCGG____________TT
17. _RUQ_745
______GGCCAT___AG______GGAGCCAA___
18. _RUQ_745
______________________________CTCC______
19. _RUQ_745
______GG___AT___________________________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-04-047-3-11
___ACGTCTTTAG______CC___GGGGGGCC
2. _GC-04-047-3-11
___ACGTCTTTAG______CC___GGGGGGCC
3. _GC-04-047-3-11
___ACGTCTTTAG______CC___GGGGGGCC
4. _GC-04-047-3-11
___ACGT___TTAG______CC___GGGGGGCC
5. _GC-04-047-3-11
___ACGTCTTTAG______CC___GGGGGGCC
6. _GC-04-047-3-11
___ACGT___TTAG______CC___GGGGGGCC
7. _GC-04-047-3-11
___ACGTCTTTAG______CC___GGGGGGCC
8. _4311_1
___ACGTCT____________CC___GGGG___CC
9. _4311_2
___ACGTCT____________CC___GGGG___CC
10. _4311_3_>_FP
___ACGTCT____________CC___GGGG___CC
11. _4311_5_>_FP
___ACGT_______________CC___GGGG___CC
12. _4311_6_>_FP
___ACGTCT____________CC___GGGG___CC
13. _4311_8_>_FP
___ACGT_______________CC___GGGG___CC
14. _4311_3_>_FP
___ACGTCT____________AC___CGAG___CT
15. _RUQ_745
TTAC____________CTAG___TT___AA______
16. _RUQ_745B
AAAC____________CTAG___GG___GG______
17. _RUQ_745
___ACACAGAAAG______CC___CCGGGGGG
18. _RUQ_745
___ACGTCT____________CC___GGGG___CC
19. _RUQ_745
___ACGTCT____________CC___GGGG___CC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-04-047-3-11
______ATAG___GGAACCGG___GGAACGAG
2. _GC-04-047-3-11
______ATAG___GGAACCGG___GGAACGAG
3. _GC-04-047-3-11
______ATAG___GGAACCGG___GGAACGAG
4. _GC-04-047-3-11
______ATAG___GGAACCGG___GGAACGAG
5. _GC-04-047-3-11
______ATAG___GGAACCGG___GGAACGAG
6. _GC-04-047-3-11
______ATAG___GGAACCGG___GGAACGAG
7. _GC-04-047-3-11
______ATAG___GGAACCGG___GGAACGAG
8. _4311_1
__________________AA_________GG______AG
9. _4311_2
__________________AA_________GG______AG
10. _4311_3_>_FP
__________________AA_________GG______AG
11. _4311_5_>_FP
__________________AA_________GG______AG
12. _4311_6_>_FP
__________________AA_________GG______AG
13. _4311_8_>_FP
__________________AA_________GG______AG
14. _4311_3_>_FP
__________________AT_________GG______AG
15. _RUQ_745
TTAA___AACC____________CT____________
16. _RUQ_745B
TTAA___AGCC____________CC____________
17. _RUQ_745
______ATAG___GGAAGGGG___GGAACG___
18. _RUQ_745
_________AG___GGAA_______________CCAG
19. _RUQ_745
__________________AA_________GG______AG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-04-047-3-11
______AC______CT___GGGGGGGG___ACCC
2. _GC-04-047-3-11
______AC___ACCT___GGGGGGGG___ACCC
3. _GC-04-047-3-11
______AC___ACCT___GG___GGGG___ACCC
4. _GC-04-047-3-11
______AC___ACCT___GGGGGGGG___ACCC
5. _GC-04-047-3-11
______AC___ACCT___GGGGGGGG___ACCC
6. _GC-04-047-3-11
______AC___ACCT___GGGGGGGG___ACCC
7. _GC-04-047-3-11
______AC___ACCT___GGGGGGGG___ACCC
8. _4311_1
_______________CT______GG___GG___AC___
9. _4311_2
____________ACCT______GG___GG___AC___
10. _4311_3_>_FP
____________ACCT____________GG___AC___
11. _4311_5_>_FP
____________ACCT______GG___GG___AC___
12. _4311_6_>_FP
____________ACCT______GG___GG___AC___
13. _4311_8_>_FP
____________ACCT______GG___GG___AC___
14. _4311_3_>_FP
____________CCCT______GT___CC___AC___
15. _RUQ_745
___AC___TTCC___AA_________CCAACCCT
16. _RUQ_745B
___AA___CTAC___AA_________GGAAACCC
17. _RUQ_745
AG___AC___AC______GGCCGGGG___ACGG
18. _RUQ_745
____________ACCT______GG___GG___ACCC
19. _RUQ_745
____________ACCT______GG___GG___AC___
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-04-047-3-11
AGCT_________AAAA___AACTCTGTAG___
2. _GC-04-047-3-11
AGCT_________AAAA___AACTCTGTAG___
3. _GC-04-047-3-11
AGCT_________AAAA___AACTCTGTAG___
4. _GC-04-047-3-11
AGCT_________AAAA___AACTCTGTAG___
5. _GC-04-047-3-11
AGCT_________AAAA___AACTCTGTAG___
6. _GC-04-047-3-11
AGCT_________AAAA___AACTCTGTAG___
7. _GC-04-047-3-11
AGCT_________AAAA___AACTCTGTAG___
8. _4311_1
___CT_________AA_______________GT______
9. _4311_2
___CT_________AA_______________GT______
10. _4311_3_>_FP
___CT_________AA_______________GT______
11. _4311_5_>_FP
___CT_________AA_______________GT______
12. _4311_6_>_FP
___CT_________AA_______________GT______
13. _4311_8_>_FP
___CT_________AA_______________GT______
14. _4311_3_>_FP
___CT_________GG_______________GT______
15. _RUQ_745
______TTAGCCAG___CC______CTGGAGTT
16. _RUQ_745B
______TTAGCCAA___CG______CTGTAGCT
17. _RUQ_745
___AG____________AA___AA______ACAG___
18. _RUQ_745
___CT________________________CTGTAG___
19. _RUQ_745
___CT_________AA_______________GT______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-04-047-3-11
GTGTTT___AC___CG___CGGGCTCCGGCT
2. _GC-04-047-3-11
GTGTTT___AC___CG___CGGGCTCCGGCT
3. _GC-04-047-3-11
GTGTTT___AC___CG___CGGGCTCCGGCT
4. _GC-04-047-3-11
GTGTTT___AC___CG___CGGGCTCCGGCT
5. _GC-04-047-3-11
GTGTTT___AC___CG___CGGGCTCCGGCT
6. _GC-04-047-3-11
GTGTTT___AC___CG___CGGGCTCCGGCT
7. _GC-04-047-3-11
GTGTTT___AC___CG___CGGGCTCCGGCT
8. _4311_1
________________________CG___CT______CT
9. _4311_2
________________________CG___CT______CT
10. _4311_3_>_FP
________________________CG___CT______CT
11. _4311_5_>_FP
________________________CG___CT______CT
12. _4311_6_>_FP
________________________CG___CT______CT
13. _4311_8_>_FP
________________________CG___CT______CT
14. _4311_3_>_FP
________________________CG___CC______TT
15. _RUQ_745
_________CTAAAATT___GG_________AA___
16. _RUQ_745B
_________TTACTTCT___CG_________GG___
17. _RUQ_745
ACACAA___AC___CGGGCG___AGGGGGAG
18. _RUQ_745
______TT___AC_________CGGGTT_________
19. _RUQ_745
________________________CG___CT______CT
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1. _GC-04-047-3-11
CGCC___AATTAACC______TTCG___CCGG
2. _GC-04-047-3-11
CGCC___AATTAACC______TTCG___CCGG
3. _GC-04-047-3-11
CGCC___AATTAACC______TTCG___CCGG
4. _GC-04-047-3-11
CGCC___AATTAACC______TTCG___CCGG
5. _GC-04-047-3-11
CGCC___AATTAACC______TTCG___CCGG
6. _GC-04-047-3-11
CGCC___AATTAACC______TTCG___CCGG
7. _GC-04-047-3-11
CGCC___AATTAACC______TTCG___CCGG
8. _4311_1
CG______AATTAA__________________CCGG
9. _4311_2
CG______AATTAA__________________CCGG
10. _4311_3_>_FP
CG______AATTAA__________________CCGG
11. _4311_5_>_FP
CG______AATTAA__________________CCGG
12. _4311_6_>_FP
CG______AATTAA__________________CCGG
13. _4311_8_>_FP
CG______AATTAA__________________CCGG
14. _4311_3_>_FP
GG______AACTAG__________________CTAA
15. _RUQ_745
______CG______GGCTTTAA______CC___AA
16. _RUQ_745B
______CG______AACCTTAA______CC___GG
17. _RUQ_745
CGGG___AAAAAA_________AA______GGGG
18. _RUQ_745
_______________AACC_______________CC___
19. _RUQ_745
CG______AATTAA__________________CCGG
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1. _GC-04-047-3-11
GGAACCGG___TTCCTTTTCTGT______AC
2. _GC-04-047-3-11
GGAACCGG___TTCCTTTTCTGT______AC
3. _GC-04-047-3-11
GGAACCGG___TTCCTTTTCTGT______AC
4. _GC-04-047-3-11
GGAACCGG___TTCCTTTTCTGT______AC
5. _GC-04-047-3-11
GGAACCGG___TTCCTTTTCTGT______AC
6. _GC-04-047-3-11
GGAACCGG___TTCCTTTTCTGT______AC
7. _GC-04-047-3-11
GGAACCGG___TTCCTTTTCTGT______AC
8. _4311_1
___AA____________CC______CT____________
9. _4311_2
___AA____________CC______CT____________
10. _4311_3_>_FP
___AA____________CC______CT____________
11. _4311_5_>_FP
___AA____________CC______CT____________
12. _4311_6_>_FP
___AA____________CC______CT____________
13. _4311_8_>_FP
___AA____________CC______CT____________
14. _4311_3_>_FP
___AA____________CT______CT____________
15. _RUQ_745
____________TT___CT____________GTAC___
16. _RUQ_745B
____________TT___CC____________TTAA___
17. _RUQ_745
CCAAGGGG_________AAAA___AC_________
18. _RUQ_745
GG______GG___TT________________________
19. _RUQ_745
___AA____________CC______CT____________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1. _GC-04-047-3-11
GGTT______TTAAGG______CTCCTTCCAG
2. _GC-04-047-3-11
GGTT______TTAAGG______CTCCTTCCAG
3. _GC-04-047-3-11
GGTT______TTAAGG______CTCCTTCCAG
4. _GC-04-047-3-11
GGTT______TTAAGG______CTCCTTCCAG
5. _GC-04-047-3-11
GGTT______TTAAGG______CTCCTTCCAG
6. _GC-04-047-3-11
GGTT______TTAAGG______CTCCTTCCAG
7. _GC-04-047-3-11
GGTT______TTAAGG______CTCCTTCCAG
8. _4311_1
GGTT_________AA_________CT___TTCCAG
9. _4311_2
GGTT_________AA_________CT___TTCCAG
10. _4311_3_>_FP
GGTT_________AA_________CT___TTCCAG
11. _4311_5_>_FP
GGTT_________AA_________CT___TTCCAG
12. _4311_6_>_FP
GGTT_________AA_________CT___TTCCAG
13. _4311_8_>_FP
GGTT_________AA_________CT___TTCCAG
14. _4311_3_>_FP
GTCC_________AA_________TT___CTCGAG
15. _RUQ_745
GT___GTTT_________GGGG_________GG___
16. _RUQ_745B
GG___GGTT_________AGGG_________CC___
17. _RUQ_745
___AA______AGACGG______AGGGAAGGAG
18. _RUQ_745
GG_________CT_______________CCTTCCAG
19. _RUQ_745
GGTT_________AC_________CT___TTCCAG
 127 128 129 130 131 132 133 134       
1. _GC-04-047-3-11
CC______ACAGCCGGCCX_XX_XX_XX_XX_XX_X
2. _GC-04-047-3-11
CC______ACAGCCGGCCX_XX_XX_XX_XX_XX_X
3. _GC-04-047-3-11
CC______ACAGCCGGCCX_XX_XX_XX_XX_XX_X
4. _GC-04-047-3-11
CC______ACAGCCGGCCX_XX_XX_XX_XX_XX_X
5. _GC-04-047-3-11
CC______ACAGCCGGCCX_XX_XX_XX_XX_XX_X
6. _GC-04-047-3-11
CC______ACAGCCGGCCX_XX_XX_XX_XX_XX_X
7. _GC-04-047-3-11
CC______ACAGCCGGCCX_XX_XX_XX_XX_XX_X
8. _4311_1
CC_____________________X_XX_XX_XX_XX_XX_X
9. _4311_2
CC_____________________X_XX_XX_XX_XX_XX_X
10. _4311_3_>_FP
CC_____________________X_XX_XX_XX_XX_XX_X
11. _4311_5_>_FP
CC_____________________X_XX_XX_XX_XX_XX_X
12. _4311_6_>_FP
CC_____________________X_XX_XX_XX_XX_XX_X
13. _4311_8_>_FP
CC_____________________X_XX_XX_XX_XX_XX_X
14. _4311_3_>_FP
CT_____________________X_XX_XX_XX_XX_XX_X
15. _RUQ_745
___TTAA_______________X_XX_XX_XX_XX_XX_X
16. _RUQ_745B
___TTAT_______________X_XX_XX_XX_XX_XX_X
17. _RUQ_745
GG______AC___CCGGCCX_XX_XX_XX_XX_XX_X
18. _RUQ_745
________________________X_XX_XX_XX_XX_XX_X
19. _RUQ_745
CC_____________________X_XX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._EET_399_[ECU] GC-04-047-3-11
Location: Tree: 1
Notes: 1
 Mars, 2018
2._EET_399_[ECU] GC-04-047-3-11
Location: Tree: 2
Notes: 2
 Mars, 2018
3._EET_399_[ECU] GC-04-047-3-11
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018
4._EET_399_[ECU] GC-04-047-3-11
Location: Tree: 5
Notes: 5 > FP1
 Mars, 2018
5._EET_399_[ECU] GC-04-047-3-11
Location: Tree: 6
Notes: 6 > FP2
 Mars, 2018
6._EET_399_[ECU] GC-04-047-3-11
Location: Tree: 8
Notes: 8 > FP3
 Mars, 2018
7._EET_399_[ECU] GC-04-047-3-11
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018
8._EET_399_[ECU]
Location: 4311 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
9._EET_399_[ECU]
Location: 4311 2
 Dapeng Zhang, 2016
10._EET_399_[ECU]
Location: 4311 3 > FP
 Dapeng Zhang, 2016
11._EET_399_[ECU]
Location: 4311 5 > FP
 Dapeng Zhang, 2016
12._EET_399_[ECU]
Location: 4311 6 > FP
 Dapeng Zhang, 2016
13._EET_399_[ECU]
Location: 4311 8 > FP
 Dapeng Zhang, 2016
14._EET_399_[ECU]
Location: 4311 3 > FP
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

15._EET_399_[ECU] RUQ 745
 Lambert Motilal, 2023
16._EET_399_[ECU] RUQ 745B
 Lambert Motilal, 2023
17._EET_399_[ECU] RUQ 745
Notes: Reading_Collection
 Mars, 2018
18._EET_399_[ECU] RUQ 745
 Dapeng Zhang, 2014
19._EET_399_[ECU] RUQ 745
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1242 113TcSNP1253 114TcSNP1270 115TcSNP1275
116TcSNP1293 117TcSNP1309 118TcSNP1350 119TcSNP1383 120TcSNP1401
121TcSNP1404 122TcSNP1414 123TcSNP1439 124TcSNP1442 125TcSNP1458
126TcSNP1484 127TcSNP1520 128TcSNP1524 129TcSNP1527 130Tcm001s00947643
131Tcm002s20575712 132Tcm003s01336581 133Tcm003s07402719 134Tcm006s26664133