SNP Profiles of "GU 114 /P" View Data

Key

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
1. _8413_1	GG	___	AA	___	___	___	___	___	AA	TT	TT	___	___	AA
2. _8413_2	GG	___	AA	___	___	___	___	___	AA	TT	___	___	___	AA
3. _8413_3	GG	___	AA	___	___	___	___	___	AA	TT	TT	___	___	AA
4. _8413_5	GG	___	AA	___	___	___	___	___	AA	TT	TT	___	___	AA
5. _8413_7	GG	___	AA	___	___	___	___	___	AA	TT	TT	___	___	AA
6. _8413_9	GG	___	AA	___	___	___	___	___	AA	TT	TT	___	___	AA
7. _8413_12	GG	___	AA	___	___	___	___	___	AA	TT	TT	___	___	AA
8. _RUQ_813	___	___	___	___	___	___	___	___	AA	___	TT	___	GG	AA
9. _RUQ_813	GG	CC	AA	GG	GG	AA	CC	AA	AA	AA	AA	TT	GG	AA
10. _RUQ_813	___	___	___	___	___	TT	CC	___	AA	TT	TT	___	GG	AA
11. _RUQ_813	GG	___	AA	___	___	___	___	___	AA	TT	TT	___	___	AA
12. _CAMPUS_1_A_X3_Y18	GG	___	AA	___	___	___	___	___	AA	TT	TT	___	___	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
1. _8413_1	CC	GG	___	CC	___	___	___	AA	___	___	GG	___	___	AG
2. _8413_2	CC	GG	___	CC	___	___	___	AA	___	___	GG	___	___	AG
3. _8413_3	CC	GG	___	CC	___	___	___	AA	___	___	GG	___	___	AG
4. _8413_5	CC	GG	___	CC	___	___	___	AA	___	___	GG	___	___	AG
5. _8413_7	CC	GG	___	CC	___	___	___	AA	___	___	GG	___	___	AG
6. _8413_9	CC	GG	___	CC	___	___	___	AA	___	___	GG	___	___	AG
7. _8413_12	CC	GG	___	CC	___	___	___	AA	___	___	GG	___	___	AG
8. _RUQ_813	GG	GG	___	___	___	___	GG	AA	TT	___	___	___	CC	___
9. _RUQ_813	GG	GG	GG	GG	TT	GG	GG	AA	AA	GG	GG	TT	GG	___
10. _RUQ_813	CC	GG	___	CC	___	GG	GG	AA	___	___	___	___	CC	AG
11. _RUQ_813	CC	GG	___	CC	___	___	___	AA	___	___	AG	___	___	AG
12. _CAMPUS_1_A_X3_Y18	___	GG	___	CC	___	___	___	AA	___	___	AG	___	___	AG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
1. _8413_1	___	___	AA	CC	___	GG	___	CC	CC	___	___	CT	AG	___
2. _8413_2	___	___	AA	CC	___	GG	___	CC	CC	___	___	CT	AG	___
3. _8413_3	___	___	AA	CC	___	GG	___	CC	CC	___	___	CT	AG	___
4. _8413_5	___	___	AA	CC	___	GG	___	CC	CC	___	___	CT	AG	___
5. _8413_7	___	___	AA	CC	___	GG	___	CC	CC	___	___	CT	AG	___
6. _8413_9	___	___	AA	CC	___	GG	___	CC	CC	___	___	CT	AG	___
7. _8413_12	___	___	AA	CC	___	GG	___	CC	CC	___	___	CT	AG	___
8. _RUQ_813	___	___	___	___	___	___	___	CC	CC	CC	AA	___	___	___
9. _RUQ_813	AA	CC	AA	___	GG	CC	GG	CC	CC	GG	___	AG	___	AG
10. _RUQ_813	___	___	AA	CC	___	GG	___	CC	CC	CC	___	CT	___	___
11. _RUQ_813	___	___	AA	CC	___	GG	___	CC	CC	___	___	CT	AA	___
12. _CAMPUS_1_A_X3_Y18	___	___	AA	CC	___	GG	___	CC	CC	___	___	CT	AA	___

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
1. _8413_1	___	___	GG	___	___	___	___	___	___	___	GG	___	CC	___
2. _8413_2	___	___	GG	___	___	___	___	___	___	___	GG	___	CC	___
3. _8413_3	___	___	GG	___	___	___	___	___	___	___	GG	___	CC	___
4. _8413_5	___	___	GG	___	___	___	___	___	___	___	GG	___	CC	___
5. _8413_7	___	___	GG	___	___	___	___	___	___	___	GG	___	CC	___
6. _8413_9	___	___	GG	___	___	___	___	___	___	___	GG	___	CC	___
7. _8413_12	___	___	GG	___	___	___	___	___	___	___	GG	___	CC	___
8. _RUQ_813	___	___	___	___	GG	___	___	___	___	GG	CC	GG	CC	___
9. _RUQ_813	AA	___	CC	AA	CC	AA	AA	AA	CC	GG	CC	___	GG	GG
10. _RUQ_813	___	CC	GG	AA	___	___	TT	AA	___	___	GG	CC	CC	___
11. _RUQ_813	___	___	GG	___	___	___	___	___	___	___	GG	___	CC	___
12. _CAMPUS_1_A_X3_Y18	___	___	GG	___	___	___	___	___	___	___	GG	___	CC	___

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
1. _8413_1	___	CC	GG	___	AA	CC	AG	___	___	___	CC	GG	___	AA
2. _8413_2	___	CC	GG	___	AA	CC	AG	___	___	___	CC	GG	___	AA
3. _8413_3	___	CC	___	___	AA	CC	AG	___	___	___	CC	GG	___	AA
4. _8413_5	___	CC	GG	___	AA	CC	___	___	___	___	CC	GG	___	AA
5. _8413_7	___	CC	GG	___	AA	CC	AG	___	___	___	CC	GG	___	AA
6. _8413_9	___	CC	GG	___	AA	CC	AG	___	___	___	CC	___	___	AA
7. _8413_12	___	CC	GG	___	AA	CC	AG	___	___	___	CC	GG	___	AA
8. _RUQ_813	___	___	___	___	___	CC	___	___	___	CC	CC	___	___	___
9. _RUQ_813	GG	GG	GG	GG	AA	GG	AG	___	AA	___	GG	GG	CC	AA
10. _RUQ_813	-	___	___	___	___	___	AG	CC	___	___	CC	___	GG	___
11. _RUQ_813	___	CC	GG	___	AA	CC	AG	___	___	___	CC	GG	___	AA
12. _CAMPUS_1_A_X3_Y18	___	CC	GG	___	AA	CC	AG	___	___	___	CC	GG	___	AA

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
1. _8413_1	___	___	___	CC	___	___	CC	___	TT	TT	___	___	___	TT
2. _8413_2	___	___	___	CC	___	___	CC	___	TT	TT	___	___	___	TT
3. _8413_3	___	___	___	CC	___	___	CC	___	TT	TT	___	___	___	TT
4. _8413_5	___	___	___	CC	___	___	CC	___	TT	TT	___	___	___	TT
5. _8413_7	___	___	___	CC	___	___	CC	___	TT	TT	___	___	___	TT
6. _8413_9	___	___	___	CC	___	___	CC	___	TT	TT	___	___	___	TT
7. _8413_12	___	___	___	CC	___	___	CC	___	TT	TT	___	___	___	TT
8. _RUQ_813	___	GG	TT	___	___	___	___	___	___	___	___	___	___	___
9. _RUQ_813	GG	GG	___	___	AA	GG	___	AA	AA	AA	AG	CC	GG	AA
10. _RUQ_813	___	GG	TT	___	___	___	___	___	TT	___	CT	___	___	___
11. _RUQ_813	___	___	___	CC	___	___	CC	___	TT	TT	___	CC	___	TT
12. _CAMPUS_1_A_X3_Y18	___	___	___	CC	___	___	CC	___	TT	TT	___	CC	___	TT

	85	86	87	88	89	90	91	92	93
1. _8413_1	___	CC	CC	GG	CC	___	___	___	___	X_X	X_X	X_X	X_X	X_X
2. _8413_2	___	CC	CC	GG	CC	___	___	___	___	X_X	X_X	X_X	X_X	X_X
3. _8413_3	___	CC	CC	GG	CC	___	___	___	___	X_X	X_X	X_X	X_X	X_X
4. _8413_5	___	CC	CC	GG	CC	___	___	___	___	X_X	X_X	X_X	X_X	X_X
5. _8413_7	___	CC	CC	GG	CC	___	___	___	___	X_X	X_X	X_X	X_X	X_X
6. _8413_9	___	CC	CC	GG	CC	___	___	___	___	X_X	X_X	X_X	X_X	X_X
7. _8413_12	___	CC	___	GG	CC	___	___	___	___	X_X	X_X	X_X	X_X	X_X
8. _RUQ_813	CC	___	GG	___	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X
9. _RUQ_813	GG	GG	GG	GG	GG	CC	AA	GG	CC	X_X	X_X	X_X	X_X	X_X
10. _RUQ_813	CC	CC	CC	GG	___	___	___	___	___	X_X	X_X	X_X	X_X	X_X
11. _RUQ_813	___	CC	CC	GG	CC	___	___	___	___	X_X	X_X	X_X	X_X	X_X
12. _CAMPUS_1_A_X3_Y18	___	CC	CC	GG	CC	___	___	___	___	X_X	X_X	X_X	X_X	X_X

Key

Mars Center for Cocoa Science Brazil

1._GU_114_/P

Location: 8413 1

2._GU_114_/P

Location: 8413 2

3._GU_114_/P

Location: 8413 3

4._GU_114_/P

Location: 8413 5

5._GU_114_/P

Location: 8413 7

6._GU_114_/P

Location: 8413 9

7._GU_114_/P

Location: 8413 12

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

8._GU_114_/P RUQ 813

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Jocelyn De Wever et al., 2019

9._GU_114_/P RUQ 813

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Notes: Reading_Collection

Mars, 2018

10._GU_114_/P RUQ 813

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Dapeng Zhang, 2014

11._GU_114_/P RUQ 813

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Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

12._GU_114_/P

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Location: CAMPUS 1 A X3 Y18

Dapeng Zhang, 2016

Key to SNP Markers

1	TcSNP25	2	TcSNP28	3	TcSNP32	4	TcSNP42	5	TcSNP60
6	TcSNP75	7	TcSNP90	8	TcSNP122	9	TcSNP144	10	TcSNP150
11	TcSNP151	12	TcSNP154	13	TcSNP174	14	TcSNP193	15	TcSNP226
16	TcSNP230	17	TcSNP240	18	TcSNP242	19	TcSNP316	20	TcSNP329
21	TcSNP364	22	TcSNP372	23	TcSNP413	24	TcSNP418	25	TcSNP429
26	TcSNP430	27	TcSNP448	28	TcSNP469	29	TcSNP497	30	TcSNP521
31	TcSNP529	32	TcSNP534	33	TcSNP547	34	TcSNP560	35	TcSNP561
36	TcSNP577	37	TcSNP591	38	TcSNP602	39	TcSNP606	40	TcSNP619
41	TcSNP645	42	TcSNP653	43	TcSNP689	44	TcSNP702	45	TcSNP723
46	TcSNP731	47	TcSNP751	48	TcSNP776	49	TcSNP799	50	TcSNP823
51	TcSNP836	52	TcSNP860	53	TcSNP872	54	TcSNP878	55	TcSNP891
56	TcSNP894	57	TcSNP899	58	TcSNP917	59	TcSNP929	60	TcSNP944
61	TcSNP953	62	TcSNP994	63	TcSNP998	64	TcSNP999	65	TcSNP1034
66	TcSNP1041	67	TcSNP1060	68	TcSNP1062	69	TcSNP1063	70	TcSNP1075
71	TcSNP1096	72	TcSNP1111	73	TcSNP1126	74	TcSNP1144	75	TcSNP1149
76	TcSNP1156	77	TcSNP1165	78	TcSNP1175	79	TcSNP1253	80	TcSNP1270
81	TcSNP1309	82	TcSNP1350	83	TcSNP1383	84	TcSNP1414	85	TcSNP1439
86	TcSNP1442	87	TcSNP1458	88	TcSNP1484	89	TcSNP1520	90	Tcm001s00947643
91	Tcm003s01336581	92	Tcm003s07402719	93	Tcm006s26664133