SNP Profiles matching ICS-1

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 Key

 1234567891011121314
_Input profile
AAAATTACGGAGCCCCTTCTGGCTCCCC
1._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
2._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
3._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
4._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
5._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
6._ICS_1
AAAATTAC____TTCTGG_CC_
7._ICS_1
AAAATTAC____TTCTGG_CC_
8._ICS_1
AAAATTAC____TTCTGG_CC_
9._ICS_1
AAAATTAC____TTCTGG_CC_
10._ICS_1
AAAATTAC____TTCTGG_CC_
11._ICS_1
AAAATTAC____TTCTGG_CC_
12._PA_70_[PER]
AAAATTAC____TTCTGG_CC_
13._GC-04-053-3-17
AAAATTACGGAGCCCCTTCTGGCTCCCC
14._ICS_1
AAAATTAC____TTCTGG_CC_
15._RUQ_847
AAAATTAC____TTCTGG_CC_
16._RUQ_847
___AC____TT___CC_
17._RUQ_847
AAAACTAC____TTCTGG_CC_
18._RUQ_817
__TTAA__CT_TT__CTCC_
19._RUQ_847
__TTAA__CT_TT__CTCC_
 1516171819202122232425262728
_Input profile
ATCCAAAAGGCGGGCTAGTTAGATATCG
1._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
2._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
3._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
4._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
5._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
6._ICS_1
___AA__GG____ATAT_
7._ICS_1
___AA__GG____ATAT_
8._ICS_1
___AA__GG____ATAT_
9._ICS_1
___AA__GG____ATAT_
10._ICS_1
___AA__GG____ATAT_
11._ICS_1
___AA__GG____ATAT_
12._PA_70_[PER]
___AA__GG____ATAT_
13._GC-04-053-3-17
ATCCAAAAGGCGGGCTAGTTAGATATCG
14._ICS_1
___AA__GG____ATAT_
15._RUQ_847
___AA__GG____ATAT_
16._RUQ_847
__AG__CG_CT__AG_ATCG
17._RUQ_847
___AA__GG____ATAT_
18._RUQ_817
_____CG____AG_ATCG
19._RUQ_847
_____CG____AG_ATCG
 2930313233343536373839404142
_Input profile
CGAACTGGAAAAAGGTGGGTAACTAACC
1._NA
CGAACTGGAAAAAGGTGGGTAACTAACC
2._NA
CGAACTGGAAAAAGGTGGGTAACTAACC
3._NA
CGAACTGGAAAAAGGTGGGTAACTAACC
4._NA
CGAACTGGAAAAAGGTGGGTAACTAACC
5._NA
CGAACTGGAAAAAGGTGGGTAACTAACC
6._ICS_1
CGAA____AGGT__AA___
7._ICS_1
CGAA____AGGT__AA___
8._ICS_1
CGAA____AGGT__AA___
9._ICS_1
CGAA____AGGT__AA___
10._ICS_1
CGAA____AGGT__AA___
11._ICS_1
CGAA____AGGT__AA___
12._PA_70_[PER]
CGAA____AGGT__AA___
13._GC-04-053-3-17
CGAACTGGAAAAAGGTGGGTAACTAACC
14._ICS_1
_AA____AGGT__AA___
15._RUQ_847
CGAA____AGGT__AG___
16._RUQ_847
CG___AA____GT_CT__
17._RUQ_847
CGAA____AGGT__AG___
18._RUQ_817
CG___AAAAAGGT__AACT__
19._RUQ_847
CG___AAAAAGGT__AACT__
 4344454647484950515253545556
_Input profile
GTAACCGGAGAGTTCCGGGGGTTTCCTT
1._NA
GTAACCGGAGAGTTCCGGGGGTTTCCTT
2._NA
GTAACCGGAGAGTTCCGGGGGTTTCCTT
3._NA
GTAACCGGAGAGTTCCGGGGGTTTCCTT
4._NA
GTAACCGGAGAGTTCCGGGGGTTTCCTT
5._NA
GTAACCGGAGAGTTCCGGGGGTTTCCTT
6._ICS_1
__CC_________CCTT
7._ICS_1
__CC_________CCTT
8._ICS_1
__CC_________CCTT
9._ICS_1
__CC_________CCTT
10._ICS_1
__CC_________CCTT
11._ICS_1
__CC_________CCTT
12._PA_70_[PER]
__CC_________CCTT
13._GC-04-053-3-17
GTAACCGGAGAGTTCCGGGGGTTTCCTT
14._ICS_1
__CC_________CCTT
15._RUQ_847
__CC_________CCTT
16._RUQ_847
_AA_GG________CC_
17._RUQ_847
__CC_________CCTT
18._RUQ_817
GTAA__AG______CTCC_
19._RUQ_847
GTAA__AG______CTCC_
 5758596061626364656667686970
_Input profile
GTAACGTTCTAAGGAAAAAGTTGTGGCT
1._NA
GTAACGTTCTAAGGAAAAAGTTGTGGCT
2._NA
GTAACGTTCTAAGGAAAAAGTTGTGGCT
3._NA
GTAACGTTCTAAGGAAAAAGTTGTGGCT
4._NA
GTAACGTTCTAAGGAAAAAGTTGTGGCT
5._NA
GTAACGTTCTAAGGAAAAAGTTGTGGCT
6._ICS_1
__CG_CTAAGG_AAAGTTGT__
7._ICS_1
__CG_CTAAGG_AAAGTTGT__
8._ICS_1
__CG_CTAAGG_AAAGTTGT__
9._ICS_1
__CG_CTAAGG_AAAGTTGT__
10._ICS_1
__CG_CTAAGG_AAAGTTGT__
11._ICS_1
__CG_CTAAGG_AAAGTTGT__
12._PA_70_[PER]
__CG_CTAAGG_AAAGTTGT__
13._GC-04-053-3-17
GTAACGTTCTAAGGAAAAAGTTGTGGCT
14._ICS_1
__CG_CTAAGG_AAAGTTGT__
15._RUQ_847
__CG_CTAAGG_AAAGTTGT__
16._RUQ_847
__CGTT_AA_AAAAAG____
17._RUQ_847
__CG_CTAAGG_AAAGTTGT__
18._RUQ_817
GT-CGTTCTAA_AAAAAGTTGTGG_
19._RUQ_847
GT-CGTTCTAA_AAAAAGTTGTGG_
 7172737475767778798081828384
_Input profile
CCGGTTACGGCCAAAACCGGCTAAACTT
1._NA
CCGGTTACGGCCAAAACCGGCTAAACTT
2._NA
CCGGTTACGGCCAAAACCGGCTAAACTT
3._NA
CCGGTTACGGCCAAAACCGGCTAAACTT
4._NA
CCGGTTACGGCCAAAACCGGCTAAACTT
5._NA
CCGGTTACGGCCAAAACCGGCTAAACTT
6._ICS_1
_GGTT_____CCGG___TT
7._ICS_1
_GGTT_____CCGG___TT
8._ICS_1
_GGTT_____CCGG___TT
9._ICS_1
_GGTT_____CCGG___TT
10._ICS_1
_GGTT_____CCGG___TT
11._ICS_1
_GGTT_____CCGG___TT
12._PA_70_[PER]
_GGTT_____CCGG___TT
13._GC-04-053-3-17
CCGGTTACGGCCAAAACCGGCTAAACTT
14._ICS_1
_GGTT_____CCGG___TT
15._RUQ_847
_GGTT_____CCGG___TT
16._RUQ_847
CC________CC____
17._RUQ_847
_GGTT_____CCGG___CT
18._RUQ_817
________CCGG__ACTT
19._RUQ_847
________CCGG__ACTT
 85868788899091929394    
_Input profile
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
1._NA
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
2._NA
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
3._NA
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
4._NA
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
5._NA
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
6._ICS_1
TTTT_AG_CTTTTT__X_XX_XX_XX_X
7._ICS_1
TTTT_AG_CTTTTT__X_XX_XX_XX_X
8._ICS_1
TTTT_AG_CTTTTT__X_XX_XX_XX_X
9._ICS_1
TTTT_AG_CTTTTT__X_XX_XX_XX_X
10._ICS_1
TTTT_AG_CTTTTT__X_XX_XX_XX_X
11._ICS_1
TTTT_AG_CTTTTT__X_XX_XX_XX_X
12._PA_70_[PER]
TTTT_AG_CTTTTT__X_XX_XX_XX_X
13._GC-04-053-3-17
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
14._ICS_1
TTTT___CTTTTT__X_XX_XX_XX_X
15._RUQ_847
TTTT_AG_CTTTTT__X_XX_XX_XX_X
16._RUQ_847
TT_________X_XX_XX_XX_X
17._RUQ_847
TTCT_AG_CTTTTT__X_XX_XX_XX_X
18._RUQ_817
___AG-CTTT___X_XX_XX_XX_X
19._RUQ_847
___AG-CTTT___X_XX_XX_XX_X

Input profile: ICS_1 NA

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

1._ICS_1 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._ICS_1 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._ICS_1 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._ICS_1 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._ICS_1 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

6._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

7._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

8._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

9._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

10._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

11._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

12._PA_70_[PER]

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

13._PA_70_[PER] GC-04-053-3-17

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1 (roxo)
 Mars, 2018

14._ICS_1

identical
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

15._ICS_1 RUQ_847

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._ICS_1 RUQ_847

94 %
25 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

17._ICS_1 RUQ_847

94.9 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

18._ICS_5 RUQ_817

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._ICS_1 RUQ_847

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

 Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240