SNP Profiles matching ICS 1

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
AAAATTACGGAGCCCCTTCTGGCTCCCC
1._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
2._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
3._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
4._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
5._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
6._ICS_1
AAAATTAC____TTCTGG_CC_
7._ICS_1
AAAATTAC____TTCTGG_CC_
8._ICS_1
AAAATTAC____TTCTGG_CC_
9._ICS_1
AAAATTAC____TTCTGG_CC_
10._ICS_1
AAAATTAC____TTCTGG_CC_
11._ICS_1
AAAATTAC____TTCTGG_CC_
12._PA_70_[PER]
AAAATTAC____TTCTGG_CC_
13._GC-04-053-3-17
AAAATTACGGAGCCCCTTCTGGCTCCCC
14._ICS_1
AAAATTAC____TTCTGG_CC_
15._RUQ_847
AAAATTAC____TTCTGG_CC_
16._RUQ_847
___AC____TT___CC_
17._RUQ_847
AAAACTAC____TTCTGG_CC_
18._RUQ_817
__TTAA__CT_TT__CTCC_
19._RUQ_847
__TTAA__CT_TT__CTCC_
 1516171819202122232425262728
_Input profile
ATCCAAAAGGCGGGCTAGTTAGATATCG
1._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
2._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
3._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
4._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
5._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
6._ICS_1
___AA__GG____ATAT_
7._ICS_1
___AA__GG____ATAT_
8._ICS_1
___AA__GG____ATAT_
9._ICS_1
___AA__GG____ATAT_
10._ICS_1
___AA__GG____ATAT_
11._ICS_1
___AA__GG____ATAT_
12._PA_70_[PER]
___AA__GG____ATAT_
13._GC-04-053-3-17
ATCCAAAAGGCGGGCTAGTTAGATATCG
14._ICS_1
___AA__GG____ATAT_
15._RUQ_847
___AA__GG____ATAT_
16._RUQ_847
__AG__CG_CT__AG_ATCG
17._RUQ_847
___AA__GG____ATAT_
18._RUQ_817
_____CG____AG_ATCG
19._RUQ_847
_____CG____AG_ATCG
 2930313233343536373839404142
_Input profile
CGAACTGGAACCAAAGGTGGGTAACTAA
1._NA
CGAACTGGAACCAAAGGTGGGTAACTAA
2._NA
CGAACTGGAACCAAAGGTGGGTAACTAA
3._NA
CGAACTGGAACCAAAGGTGGGTAACTAA
4._NA
CGAACTGGAACCAAAGGTGGGTAACTAA
5._NA
CGAACTGGAA_AAAGGTGGGTAACTAA
6._ICS_1
CGAA___CC_AGGT__AA__
7._ICS_1
CGAA___CC_AGGT__AA__
8._ICS_1
CGAA_____AGGT__AA__
9._ICS_1
CGAA___CC_AGGT__AA__
10._ICS_1
CGAA___CC_AGGT__AA__
11._ICS_1
CGAA___CC_AGGT__AA__
12._PA_70_[PER]
CGAA___CC_AGGT__AA__
13._GC-04-053-3-17
CGAACTGGAACCAAAGGTGGGTAACTAA
14._ICS_1
_AA___CC_AGGT__AA__
15._RUQ_847
CGAA___CC_AGGT__AG__
16._RUQ_847
CG___AACC____GT_CT_
17._RUQ_847
CGAA___CC_AGGT__AG__
18._RUQ_817
CG___AACCAAAGGT__AACT_
19._RUQ_847
CG___AACCAAAGGT__AACT_
 4344454647484950515253545556
_Input profile
CCGTAACCGGAGAGTTCCGGGGGTTTCC
1._NA
CCGTAACCGGAGAGTTCCGGGGGTTTCC
2._NA
CCGTAACCGGAGAGTTCCGGGGGTTTCC
3._NA
CCGTAACCGGAGAGTTCCGGGGGTTTCC
4._NA
CCGTAACCGGAGAGTTCCGGGGGTTTCC
5._NA
CCGTAACCGGAGAGTTCCGGGGGTTTCC
6._ICS_1
___CC_________CC
7._ICS_1
___CC_________CC
8._ICS_1
___CC_________CC
9._ICS_1
___CC_________CC
10._ICS_1
___CC_________CC
11._ICS_1
___CC_________CC
12._PA_70_[PER]
___CC_________CC
13._GC-04-053-3-17
CCGTAACCGGAGAGTTCCGGGGGTTTCC
14._ICS_1
___CC_________CC
15._RUQ_847
___CC_________CC
16._RUQ_847
__AA_GG________CC
17._RUQ_847
___CC_________CC
18._RUQ_817
_GTAA__AG______CTCC
19._RUQ_847
_GTAA__AG______CTCC
 5758596061626364656667686970
_Input profile
TTGTAACGTTCTAAGGAAAAAGTTGTGG
1._NA
TTGTAACGTTCTAAGGAAAAAGTTGTGG
2._NA
TTGTAACGTTCTAAGGAAAAAGTTGTGG
3._NA
TTGTAACGTTCTAAGGAAAAAGTTGTGG
4._NA
TTGTAACGTTCTAAGGAAAAAGTTGTGG
5._NA
TTGTAACGTTCTAAGGAAAAAGTTGTGG
6._ICS_1
TT__CG_CTAAGG_AAAGTTGT_
7._ICS_1
TT__CG_CTAAGG_AAAGTTGT_
8._ICS_1
TT__CG_CTAAGG_AAAGTTGT_
9._ICS_1
TT__CG_CTAAGG_AAAGTTGT_
10._ICS_1
TT__CG_CTAAGG_AAAGTTGT_
11._ICS_1
TT__CG_CTAAGG_AAAGTTGT_
12._PA_70_[PER]
TT__CG_CTAAGG_AAAGTTGT_
13._GC-04-053-3-17
TTGTAACGTTCTAAGGAAAAAGTTGTGG
14._ICS_1
TT__CG_CTAAGG_AAAGTTGT_
15._RUQ_847
TT__CG_CTAAGG_AAAGTTGT_
16._RUQ_847
___CGTT_AA_AAAAAG___
17._RUQ_847
TT__CG_CTAAGG_AAAGTTGT_
18._RUQ_817
_GT-CGTTCTAA_AAAAAGTTGTGG
19._RUQ_847
_GT-CGTTCTAA_AAAAAGTTGTGG
 7172737475767778798081828384
_Input profile
CTCCGGTTACGGCCAAAACCGGCTAAAC
1._NA
CTCCGGTTACGGCCAAAACCGGCTAAAC
2._NA
CTCCGGTTACGGCCAAAACCGGCTAAAC
3._NA
CTCCGGTTACGGCCAAAACCGGCTAAAC
4._NA
CTCCGGTTACGGCCAAAACCGGCTAAAC
5._NA
CTCCGGTTACGGCCAAAACCGGCTAAAC
6._ICS_1
__GGTT_____CCGG___
7._ICS_1
__GGTT_____CCGG___
8._ICS_1
__GGTT_____CCGG___
9._ICS_1
__GGTT_____CCGG___
10._ICS_1
__GGTT_____CCGG___
11._ICS_1
__GGTT_____CCGG___
12._PA_70_[PER]
__GGTT_____CCGG___
13._GC-04-053-3-17
CTCCGGTTACGGCCAAAACCGGCTAAAC
14._ICS_1
__GGTT_____CCGG___
15._RUQ_847
__GGTT_____CCGG___
16._RUQ_847
_CC________CC___
17._RUQ_847
__GGTT_____CCGG___
18._RUQ_817
_________CCGG__AC
19._RUQ_847
_________CCGG__AC
 8586878889909192939495   
_Input profile
TTTTTTTTAGCTCTTTTTAAGGX_XX_XX_X
1._NA
TTTTTTTTAGCTCTTTTTAAGGX_XX_XX_X
2._NA
TTTTTTTTAGCTCTTTTTAAGGX_XX_XX_X
3._NA
TTTTTTTTAGCTCTTTTTAAGGX_XX_XX_X
4._NA
TTTTTTTTAGCTCTTTTTAAGGX_XX_XX_X
5._NA
TTTTTTTTAGCTCTTTTTAAGGX_XX_XX_X
6._ICS_1
TTTTTT_AG_CTTTTT__X_XX_XX_X
7._ICS_1
TTTTTT_AG_CTTTTT__X_XX_XX_X
8._ICS_1
TTTTTT_AG_CTTTTT__X_XX_XX_X
9._ICS_1
TTTTTT_AG_CTTTTT__X_XX_XX_X
10._ICS_1
TTTTTT_AG_CTTTTT__X_XX_XX_X
11._ICS_1
TTTTTT_AG_CTTTTT__X_XX_XX_X
12._PA_70_[PER]
TTTTTT_AG_CTTTTT__X_XX_XX_X
13._GC-04-053-3-17
TTTTTTTTAGCTCTTTTTAAGGX_XX_XX_X
14._ICS_1
TTTTTT___CTTTTT__X_XX_XX_X
15._RUQ_847
TTTTTT_AG_CTTTTT__X_XX_XX_X
16._RUQ_847
_TT_________X_XX_XX_X
17._RUQ_847
CTTTCT_AG_CTTTTT__X_XX_XX_X
18._RUQ_817
TT___AG-CTTT___X_XX_XX_X
19._RUQ_847
TT___AG-CTTT___X_XX_XX_X

Input profile: ICS_1 NA

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

1._ICS_1 NA

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._ICS_1 NA

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

3._ICS_1 NA

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._ICS_1 NA

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

5._ICS_1 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

7._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

8._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

9._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

10._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

11._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

12._PA_70_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

13._PA_70_[PER] GC-04-053-3-17

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1 (roxo)
 Mars, 2018

14._ICS_1

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

15._ICS_1 RUQ_847

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._ICS_1 RUQ_847

94.2 %
26 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

17._ICS_1 RUQ_847

95 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

18._ICS_5 RUQ_817

90.7 %
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._ICS_1 RUQ_847

90.7 %
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

 

 Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240