SNP Profiles matching CC137

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 Key

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_Input profile
GGTTCCGTCTACCCAACTAAGGAGCCCT
1._RUQ_1634
GGTTCCGTCTACCCAACTAAGGAGCCCT
2._CC_137
GGTTCCGT_AC_AACT_GGAGCCCT
3._RUQ_1637
__CCGTCTACCCAACTAA_AGCC-
4._CC_137
GGTTCCGTCTACCCAACTAAGGAGCCCT
5._CC_137
GGTTCCGTCTACCCAACTAAGGAGCCCT
6._CC_137
GGTTCCGTCTACCCAACTAAGGAGCCCT
7._GC-01-134-7-11
GGTTCCGTCTACCCAACTAAGGAGCCCT
8._GC-01-134-7-11
GGTTCCGTCTACCCAACTAAGGAGCCCT
9._GC-01-134-7-11
GGTTCCGTCTACCCAACTAAGGAGCCCT
10._CC_137
GG_CCGTCTACCCAACTAAGGAGCCCT
11._GC-01-134-7-11
GG_CCGTCTACCCAACTAAGGAGCCCT
12._CC_10
GGTTCCGT_AC_AGCT_GGAGCCCT
13._CC_10
GGTTCCGTCTACCGAGCTATGGAGCCCT
14._CC_10
GGTTCCGTCTACCGAGCTATGGAGCCCT
15._CC_10
GGTTCCGTCTACCGAGCTATGGAGCCCT
16._CC_10
GGTTCCGTCTACCGAGCTATGGAGCCCT
17._GC-08-271-8-43
GGTTCCGTCTACCGAGCTATGGAGCCCT
18._GC-08-271-8-43
GGTTCCGTCTACCGAGCTATGGAGCCCT
19._GC-08-271-8-43
GGTTCCGTCTACCGAGCTATGGAGCCCT
20._GC-08-271-8-43
GGTTCCGTCTACCGAGCTATGGAGCCCT
21._CC_10
GGTTCCGTCTACCGAGCTTTGGAGCCCT
22._CC_10
GGTTCCGTCTACCGAG_ATGGAGCCCT
23._GC-08-271-8-43
GGTTCCGTCTACCGAG_ATGGAGCCCT
 1516171819202122232425262728
_Input profile
TTCCCCCTAGGGGGCCTTGGAACTAGCT
1._RUQ_1634
TTCCCCCTAGGGGGCCTTGGAACTAGCT
2._CC_137
TTCC_CTAGGGGGCCTTGGAACTAGCT
3._RUQ_1637
TTCCCCCT_GGGGCC____AGCT
4._CC_137
TTCCCCCTGGGGGGCCTTGGAACTAGCT
5._CC_137
TTCCCCCTGGGGGGCCTTGGAACTAGCT
6._CC_137
TTCCCCCTGGGGGGCCTTGGAACTAGCT
7._GC-01-134-7-11
TTCCCCCTGGGGGGCCTTGGAACTAGCT
8._GC-01-134-7-11
TTCCCCCTGGGGGGCCTTGGAACTAGCT
9._GC-01-134-7-11
TTCCCCCTGGGGGGCCTTGGAACTAGCT
10._CC_137
TTCCCCCTGGGGGGCCTTGGAACTAGCT
11._GC-01-134-7-11
TTCCCCCTGGGGGGCCTTGGAACTAGCT
12._CC_10
TTCC_CTAGGTGGCCTTGGAACTAGCT
13._CC_10
TTCCACCTGGGTGGCCTTGGAACTAGCT
14._CC_10
TTCCACCTGGGTGGCCTTGGAACTAGCT
15._CC_10
TTCCACCTGGGTGGCCTTGGAACTAGCT
16._CC_10
TTCCACCTGGGTGGCCTTGGAACTAGCT
17._GC-08-271-8-43
TTCCACCTGGGTGGCCTTGGAACTAGCT
18._GC-08-271-8-43
TTCCACCTGGGTGGCCTTGGAACTAGCT
19._GC-08-271-8-43
TTCCACCTGGGTGGCCTTGGAACTAGCT
20._GC-08-271-8-43
TTCCACCTGGGTGGCCTTGGAACTAGCT
21._CC_10
TTCCACCTAGGTGGCCTTGGAACTAGCT
22._CC_10
TTCCACCTGGGTGGCCTTGGAACTAGCT
23._GC-08-271-8-43
TTCCACCTGGGTGGCCTTGGAACTAGCT
 2930313233343536373839   
_Input profile
AAAACTCTTTCCAATTCTAGCTX_XX_XX_X
1._RUQ_1634
AAAACTCTTTCCAATTCTAGCTX_XX_XX_X
2._CC_137
AAAACTCTTT_AATTCT__X_XX_XX_X
3._RUQ_1637
____TT___CTAG_X_XX_XX_X
4._CC_137
AAAACTCTTTCCAATTCTAGCTX_XX_XX_X
5._CC_137
AAAACTCTTTCCAATTCTAGCTX_XX_XX_X
6._CC_137
AAAACTCTTTCCAATTCTAGCTX_XX_XX_X
7._GC-01-134-7-11
AAAACTCTTTCCAATTCTAGCTX_XX_XX_X
8._GC-01-134-7-11
AAAACTCTTTCCAATTCTAGCTX_XX_XX_X
9._GC-01-134-7-11
AAAACTCTTTCCAATTCTAGCTX_XX_XX_X
10._CC_137
AAAACTCTTTCCAATTCTAGCTX_XX_XX_X
11._GC-01-134-7-11
AAAACTCTTTCCAATTCTAGCTX_XX_XX_X
12._CC_10
AAAACTCTGT_AATTCT__X_XX_XX_X
13._CC_10
AAAACTCTGTCCAATTCTAGCTX_XX_XX_X
14._CC_10
AAAACTCTGTCCAATTCTAGCTX_XX_XX_X
15._CC_10
AAAACTCTGTCCAATTCTAGCTX_XX_XX_X
16._CC_10
AAAACTCTGTCCAATTCTAGCTX_XX_XX_X
17._GC-08-271-8-43
AAAACTCTGTCCAATTCTAGCTX_XX_XX_X
18._GC-08-271-8-43
AAAACTCTGTCCAATTCTAGCTX_XX_XX_X
19._GC-08-271-8-43
AAAACTCTGTCCAATTCTAGCTX_XX_XX_X
20._GC-08-271-8-43
AAAACTCTGTCCAATTCTAGCTX_XX_XX_X
21._CC_10
AAAACTCTGTCCAATTCTAGCTX_XX_XX_X
22._CC_10
AAAACTCTGTCCAATTCTAGCTX_XX_XX_X
23._GC-08-271-8-43
AAAACTCTGTCCAATTCTAGCTX_XX_XX_X

Input profile: CC_137 RUQ_1637

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

1._IMC_14 RUQ_1634

identical
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._CC_137

identical
32 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

3._CC_137 RUQ_1637

identical
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

4._CC_137

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1711 6
 Dapeng Zhang, 2016

5._CC_137

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1711 5
 Dapeng Zhang, 2016

6._CC_137

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1711 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

7._CC_137 GC-01-134-7-11

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._CC_137 GC-01-134-7-11

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._CC_137 GC-01-134-7-11

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

10._CC_137

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1711 1
 Dapeng Zhang, 2016

11._CC_137 GC-01-134-7-11

98.7 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

12._CC_10

95.3 %
32 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

13._CC_10

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8843 9
 Dapeng Zhang, 2016

14._CC_10

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8843 7
 Dapeng Zhang, 2016

15._CC_10

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8843 5
 Dapeng Zhang, 2016

16._CC_10

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8843 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

17._CC_10 GC-08-271-8-43

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

18._CC_10 GC-08-271-8-43

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._CC_10 GC-08-271-8-43

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: Dead
 Mars, 2018

20._CC_10 GC-08-271-8-43

91 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: Dead
 Mars, 2018

21._CC_10

91 %
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Trial 1/Rep 1 45
 Dapeng Zhang, 2016

22._CC_10

90.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8843 2
 Dapeng Zhang, 2016

23._CC_10 GC-08-271-8-43

90.8 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

 


  Key to SNP Markers

1TcSNP25 2TcSNP32 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP193 7TcSNP226 8TcSNP230 9TcSNP242 10TcSNP372
11TcSNP429 12TcSNP469 13TcSNP529 14TcSNP534 15TcSNP560
16TcSNP577 17TcSNP591 18TcSNP619 19TcSNP645 20TcSNP723
21TcSNP872 22TcSNP891 23TcSNP917 24TcSNP929 25TcSNP953
26TcSNP994 27TcSNP998 28TcSNP1060 29TcSNP1062 30TcSNP1075
31TcSNP1144 32TcSNP1165 33TcSNP1253 34TcSNP1270 35TcSNP1350
36TcSNP1414 37TcSNP1442 38TcSNP1484 39TcSNP1520