SNP Profiles matching GU 241

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 Key

 1234567891011121314
_Input profile
CCACAGCCAAGGGGCCAAGGGGAAGGAA
1._RUQ_1431
CCACAGCCAAGGGGCCAAGGGGAAGGAA
2._MITC-000612
CCACAGCCAAGGGGCCAAGGGGAAGGAA
3._RUQ_222
CCAAAACCAAGGGGCCAAGGGGAAGGAA
4._GC-08-052-1-63
CCAAAACCAAGGGGCCAAGGGGAAGGAA
5._RUQ_1543
CCACGGCCAAGGGGCCAAGGGGAAGGAA
6._RUQ_200
CCAAAACCAAGGGGCCAAGGGGAAGGAA
7._GC-01-75-4-11
CCAAAACCAAGGGGCCAAGGGGAAGGAA
8._MITC-000670
CCACGGCCAAGGGGCCAAGGGGAAGGAA
9._GC-01-74-4-10
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
10._GC-01-78-4-14
CCACAACCAAGGGGCCAAGGGGAAGGAA
11._GU_221_H_Fld#_162_Plt#_1
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
12._RUQ_188
CCACAACCAAGGGGCCAAGGGGAAGGAA
13._GC-01-116-6-13
CCACGGCCAAGGGGCCAAGGGGAAGGAA
14._GC-01-73-4-9
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
15._GC-01-76-4-12
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
16._RUQ_771
CCACAGCCAAGGGGCCAAGGGGAAGGAA
17._RUQ_768
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
18._GC-04-23-2-5
CCAAAACCAAGGGGCCAAGGGGAAGGAA
 1516171819202122232425262728
_Input profile
AAAAAAAACCGGAAGGAAGGCGAGAAAA
1._RUQ_1431
AAAAAAAACCGGAAGGAAGGCGAGAAAA
2._MITC-000612
AAAAAAAACCGGAAGGAAGGCGAGAAAA
3._RUQ_222
AAAAAAAACCGGAAGGAAGGCCAGAAAA
4._GC-08-052-1-63
AAAAAAAGCCGGAAGGAAGGCGGGAAAA
5._RUQ_1543
AAAAAAAG_GGAAGGAAGGCGGGAAAA
6._RUQ_200
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
7._GC-01-75-4-11
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
8._MITC-000670
AAAAAAAACCGGAAGGAAGGCGGGAAAA
9._GC-01-74-4-10
AAAAAAAG_GGAAGGAAGGCCAGAAAA
10._GC-01-78-4-14
AAAAAAAA_GGAAGGAAGGCGGGAAAA
11._GU_221_H_Fld#_162_Plt#_1
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
12._RUQ_188
AAAAAAAACCGGAAGGAAGGCGGGAAAA
13._GC-01-116-6-13
AAAAAAAA_GGAAGGAAGGCGGGAAAA
14._GC-01-73-4-9
AAAAAAAGCCGGAAGGAAGGCGGGAAAA
15._GC-01-76-4-12
AAAAAAAG_GGAAGGAAGGCGGGAAAA
16._RUQ_771
AAAAAAAACCGGAAGGAAGGGGGGAAAA
17._RUQ_768
AAAAAAAGCCGGAAGGAAGGCCGGAAAA
18._GC-04-23-2-5
AAAAAAGGACGGAAGGAAGGCCGGAAAA
 2930313233343536373839404142
_Input profile
GGTTGGAAGGGGGGGGGGCCTTATAGGG
1._RUQ_1431
GGTTGGAAGGGGGGGGGGCCTTATAGGG
2._MITC-000612
GGTTGGAAGGGGGGGGGGCCTTATAGGG
3._RUQ_222
GGTTGGAAGGGGGGGGGGCCTTATGGGG
4._GC-08-052-1-63
GGTTGGAAGGGGGGGGGGCCTTATGGGG
5._RUQ_1543
GGTTGGAAGGGGGGGGGGCCTTATAGGG
6._RUQ_200
GGTTGGAAGGGGGGGGGGCCTTATGGGG
7._GC-01-75-4-11
GGTTGGAAGGGGGGGGGGCCTTATGGGG
8._MITC-000670
GGTTGGAAGGGGGGGGGGCCTTATGGGG
9._GC-01-74-4-10
GGTTGGAAGGGGGGGGGGCCTTAAAGGG
10._GC-01-78-4-14
GGTTGGAAGGGGGGGGGGCCTTATGGGG
11._GU_221_H_Fld#_162_Plt#_1
GGTTGGAAGGGGGGGGGGCCTTAAAGGG
12._RUQ_188
GGTTGGAAGGGGGGGGGGCCTTATGGGG
13._GC-01-116-6-13
GGTTGGAAGGGGGGGGGG_TTATGGGG
14._GC-01-73-4-9
GGTTGGAAGGGGGGGGGGCCTTTTGGGG
15._GC-01-76-4-12
GGTTGGAAGGGGGGGGGGCCTTTTGGGG
16._RUQ_771
GGTTGGAAGGGGGGGGGGCCTTAAGGGG
17._RUQ_768
GGTTGGAAGGGGGGGGGGCCTTAAGGGG
18._GC-04-23-2-5
GGTTGGAAGGGGGGGGGGCCTTTTGGGG
 4344454647484950515253545556
_Input profile
AAAAGGGGGGTTGGAACCAAGGCCGGCC
1._RUQ_1431
AAAAGGGGGGTTGGAACCAAGGCCGGCC
2._MITC-000612
AAAAGGGGGGTTGGAACCAAGGCCGGCC
3._RUQ_222
AAAAGGGGGGTTGGAACCAAGGCCGGCC
4._GC-08-052-1-63
AAAAGGGGGGTTGGAACCAAGGCCGGCC
5._RUQ_1543
AAAGGGGGGGTTGGAACCAAGGCCGGCC
6._RUQ_200
AAAAGGGGGGTTGGAACCAAGGCCGGCC
7._GC-01-75-4-11
AAAAGGGGGGTTGGAACCAAGGCCGGCC
8._MITC-000670
AAAAGGGGGGTTGGAACCAAGGCCGGCC
9._GC-01-74-4-10
AAAGGGGGGGTTGGAACCAAGGCCGGCC
10._GC-01-78-4-14
AAAGGGGGGGTTGGAACCAAGGCCGGCC
11._GU_221_H_Fld#_162_Plt#_1
AAAGGGGGGGTTGGAACCAAGGCCGGCC
12._RUQ_188
AAAGGGGGGGTTGGAACCAAGGCCGGCC
13._GC-01-116-6-13
AAAAGGGGGGTTGGAACCAAGGCCGGCC
14._GC-01-73-4-9
AAAAGGGGGGTTGGAACCAAGGCCGGCC
15._GC-01-76-4-12
AAAAGGGGGGTTGGAACCAAGGCCGGCC
16._RUQ_771
AAAAGGGGGGTTGGAACCAAGGCCGGCC
17._RUQ_768
AAAAGGGGGGTTGGAACCAAGGCCGGCC
18._GC-04-23-2-5
AAAAGGGGGGTTGGAACCAAGGCCGGCC
 5758596061626364656667686970
_Input profile
ACGGGGGGAGAACCAAAAACAAAAAACC
1._RUQ_1431
ACGGGGGGAGAACCAAAAACAAAAAACC
2._MITC-000612
ACGGGGGGAGAACCAAAAACAAAAAACC
3._RUQ_222
CCGGGGGGAGAACCAAAAACAAAAAACC
4._GC-08-052-1-63
CCGGGGGGAGAACCAAAAACAAAAAACC
5._RUQ_1543
AAGGGGAGAAAACCAAAAACAAAAAACC
6._RUQ_200
ACGGGGGGAGAACCAAAAAAAAAAAACC
7._GC-01-75-4-11
ACGGGGGGAGAACCAAAAAAAAAAAACC
8._MITC-000670
ACGGGGGGGGAACCAAAACCAAAAAACC
9._GC-01-74-4-10
CCGGGGGGAGAACCAAAAAAAAAAAACC
10._GC-01-78-4-14
ACGGGGGGGGAACCAAAACCAAAAAACC
11._GU_221_H_Fld#_162_Plt#_1
CCGGGGGGAGAACCAAAAAAAAAAAACC
12._RUQ_188
ACGGGGGGGGAACCAAAACCAAAAAACC
13._GC-01-116-6-13
ACGGGGGGGGAACCAAAACCAAAAAACC
14._GC-01-73-4-9
ACGGGGGGGGAACCAAAACCAAAAAACC
15._GC-01-76-4-12
ACGGGGGGGGAACCAAAACCAAAAAACC
16._RUQ_771
ACGGGGGGAAAACCAAAACCAAAAAACC
17._RUQ_768
CCGGGGAGAGAACCAAAACCAAAAAACC
18._GC-04-23-2-5
ACGGGGGGAGAACCAAAAACAAAAAACC
 717273747576777879808182  
_Input profile
GGCCGGGGGGCCGGGGGGAAAGAAX_XX_X
1._RUQ_1431
GGCCGGGGGGCCGGGGGGAAAGAAX_XX_X
2._MITC-000612
GGCCGGGGGGCCGGGGGGAAAGAAX_XX_X
3._RUQ_222
GGCCGGGGGGCCGGGGGGAAAGAGX_XX_X
4._GC-08-052-1-63
GGCCGGGGGGCCGGGGGGAAAGAGX_XX_X
5._RUQ_1543
GGCCGGGGGGCCGGGGGGAAAGGGX_XX_X
6._RUQ_200
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
7._GC-01-75-4-11
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
8._MITC-000670
GGCCGGGGGGCCGGGGGGAAGGGGX_XX_X
9._GC-01-74-4-10
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
10._GC-01-78-4-14
GGCCGGGGGGCCGGGGGGAAGGAGX_XX_X
11._GU_221_H_Fld#_162_Plt#_1
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
12._RUQ_188
GGCCGGGGGGCCGGGGGGAAGGAGX_XX_X
13._GC-01-116-6-13
GGCCGGGGGGCCGGGGGGAAGGGGX_XX_X
14._GC-01-73-4-9
GGCCGGGGGGCCGGGGGGAAAGGGX_XX_X
15._GC-01-76-4-12
GGCCGGGGGGCCGGGGGGAAAGGGX_XX_X
16._RUQ_771
GGCCGGGGGGCCGGGGGGAAGGAGX_XX_X
17._RUQ_768
GGCCGGGGGGCCGGGGGGAAAGAAX_XX_X
18._GC-04-23-2-5
GGCCGGGGGGCCGGGGGGAAAGAGX_XX_X

Input profile: GU_241 GC-08-266-8-38

 
Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_241_/P RUQ_1431

identical
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._GU_241_/P MITC-000612

identical
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

3._GU_147_/H RUQ_222

93.3 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

4._GU_335 GC-08-052-1-63

92.7 %
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 63, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

5._GU_183_/G RUQ_1543

92 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

6._GU_221_/C RUQ_200

92.1 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

7._GU_221_/C GC-01-75-4-11

92.1 %
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

8._GU_133_/C MITC-000670

91.5 %
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

9._GU_221_/H GC-01-74-4-10

91.4 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 10, Tree: 6
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

10._GU_154_/C GC-01-78-4-14

91.4 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 14, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

11._GU_221_/H GU_221_H_Fld#_162_Plt#_1

91.5 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 162, Tree: 1
 Mars, 2018

12._GU_125_/C RUQ_188

91.5 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

13._GU_133_/C GC-01-116-6-13

91.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

14._GU_144_/C GC-01-73-4-9

90.9 %
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

15._GU_296_/H GC-01-76-4-12

90.7 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

16._GU_277_/G RUQ_771

90.9 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

17._GU_219_/F RUQ_768

90.2 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

18._GU_353 GC-04-23-2-5

90.2 %
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 4, Block: 2, Rep: 5, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

 Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998