SNP Profiles matching GU 221 /H

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 Key

 1234567891011121314
_Input profile
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
1._GU_221_H_Fld#_162_Plt#_1
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
2._RUQ_200
CCAAAACCAAGGGGCCAAGGGGAAGGAA
3._GC-01-75-4-11
CCAAAACCAAGGGGCCAAGGGGAAGGAA
4._RUQ_768
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
5._RUQ_1431
CCACAGCCAAGGGGCCAAGGGGAAGGAA
6._MITC-000612
CCACAGCCAAGGGGCCAAGGGGAAGGAA
7._GC-08-266-8-38
CCACAGCCAAGGGGCCAAGGGGAAGGAA
8._MITC-000615
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
9._MITC-000578
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
10._GC-01-73-4-9
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
11._RUQ_191
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
12._GC-01-73-4-9
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
13._RUQ_222
CCAAAACCAAGGGGCCAAGGGGAAGGAA
14._RUQ_814
CCACAGCCAAGGGGCCAAGGGGAAGGAA
15._GC-08-052-1-63
CCAAAACCAAGGGGCCAAGGGGAAGGAA
16._GU-156B_Fld#_198_Plt#_2
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
17._MITC-000403
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
18._RUQ_815
CCAAAACCAAGGGGCCAAGGGGAAGGAA
19._GC-08-268-8-40
CCAAAACCAAGGGGCCAAGGGGAAGGAA
20._RUQ_1543
CCACGGCCAAGGGGCCAAGGGGAAGGAA
21._GC-04-23-2-5
CCAAAACCAAGGGGCCAAGGGGAAGGAA
22._GC-08-170-4-13
CCAAGGCCAAGGGGCCAAGGGGAAGGAA
23._RUQ_813
CCAAGGCCAAGGGGCCAAGGGGAAGGAA
 1516171819202122232425262728
_Input profile
AAAAAAAGGGAAGGAAGGCCAGAAAAGG
1._GU_221_H_Fld#_162_Plt#_1
AAAAAAAGGGAAGGAAGGCCAGAAAAGG
2._RUQ_200
AAAAAAAGGGAAGGAAGGCCAGAAAAGG
3._GC-01-75-4-11
AAAAAAAGGGAAGGAAGGCCAGAAAAGG
4._RUQ_768
AAAAAAAGGGAAGGAAGGCCGGAAAAGG
5._RUQ_1431
AAAAAAAAGGAAGGAAGGCGAGAAAAGG
6._MITC-000612
AAAAAAAAGGAAGGAAGGCGAGAAAAGG
7._GC-08-266-8-38
AAAAAAAAGGAAGGAAGGCGAGAAAAGG
8._MITC-000615
AAAAAAAGGGAAGGAAGGCCGGAAAAGG
9._MITC-000578
AAAAAAAGGGAAGGAAGGCCGGAAAAGG
10._GC-01-73-4-9
AAAAAAAGGGAAGGAAGGCCGGAAAAGG
11._RUQ_191
AAAAAAAGGGAAGGAAGGCCGGAAAAGG
12._GC-01-73-4-9
AAAAAAAGGGAAGGAAGGCCGGAAAAGG
13._RUQ_222
AAAAAAAAGGAAGGAAGGCCAGAAAAGG
14._RUQ_814
AAAAAAAGGGAAGGAAGGCCAGAAAAGG
15._GC-08-052-1-63
AAAAAAAGGGAAGGAAGGCGGGAAAAGG
16._GU-156B_Fld#_198_Plt#_2
AAAAAAAAGGAAGGAAGGGGGGAAAAGG
17._MITC-000403
AAAAAAAAGGAAGGAAGGGGGGAAAAGG
18._RUQ_815
AAAAAAAAGGAAGGAAGGCCGGAAAAGG
19._GC-08-268-8-40
AAAAAAAAGGAAGGAAGGCCGGAAAAGG
20._RUQ_1543
AAAAAAAGGGAAGGAAGGCGGGAAAAGG
21._GC-04-23-2-5
AAAAAAGGGGAAGGAAGGCCGGAAAAGG
22._GC-08-170-4-13
AAAAAAAGGGAAGGAAGGGGGGAAAAGG
23._RUQ_813
AAAAAAAGGGAAGGAAGGGGGGAAAAGG
 2930313233343536373839404142
_Input profile
TTGGAAGGGGGGGGGGCCTTAAAGGGAA
1._GU_221_H_Fld#_162_Plt#_1
TTGGAAGGGGGGGGGGCCTTAAAGGGAA
2._RUQ_200
TTGGAAGGGGGGGGGGCCTTATGGGGAA
3._GC-01-75-4-11
TTGGAAGGGGGGGGGGCCTTATGGGGAA
4._RUQ_768
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
5._RUQ_1431
TTGGAAGGGGGGGGGGCCTTATAGGGAA
6._MITC-000612
TTGGAAGGGGGGGGGGCCTTATAGGGAA
7._GC-08-266-8-38
TTGGAAGGGGGGGGGGCCTTATAGGGAA
8._MITC-000615
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
9._MITC-000578
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
10._GC-01-73-4-9
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
11._RUQ_191
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
12._GC-01-73-4-9
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
13._RUQ_222
TTGGAAGGGGGGGGGGCCTTATGGGGAA
14._RUQ_814
TTGGAAGGGGGGGGGGCCTTTTGGGGAA
15._GC-08-052-1-63
TTGGAAGGGGGGGGGGCCTTATGGGGAA
16._GU-156B_Fld#_198_Plt#_2
TTGGAAGGGGGGGGGGCCTTATGGGGAA
17._MITC-000403
TTGGAAGGGGGGGGGGCCTTATGGGGAA
18._RUQ_815
TTGGAAGGGGGGGGGGCCTTATGGGGAA
19._GC-08-268-8-40
TTGGAAGGGGGGGGGGCCTTATGGGGAA
20._RUQ_1543
TTGGAAGGGGGGGGGGCCTTATAGGGAA
21._GC-04-23-2-5
TTGGAAGGGGGGGGGGCCTTTTGGGGAA
22._GC-08-170-4-13
TTGGAAGGGGGGGGGG_TTAAGGGGAA
23._RUQ_813
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
 4344454647484950515253545556
_Input profile
AGGGGGGGTTGGAACCAAGGCCGGCCCC
1._GU_221_H_Fld#_162_Plt#_1
AGGGGGGGTTGGAACCAAGGCCGGCCCC
2._RUQ_200
AAGGGGGGTTGGAACCAAGGCCGGCCAC
3._GC-01-75-4-11
AAGGGGGGTTGGAACCAAGGCCGGCCAC
4._RUQ_768
AAGGGGGGTTGGAACCAAGGCCGGCCCC
5._RUQ_1431
AAGGGGGGTTGGAACCAAGGCCGGCCAC
6._MITC-000612
AAGGGGGGTTGGAACCAAGGCCGGCCAC
7._GC-08-266-8-38
AAGGGGGGTTGGAACCAAGGCCGGCCAC
8._MITC-000615
AGGGGGGGTTGGAACCAAGGCCAGCCCC
9._MITC-000578
AGGGGGGGTTGGAACCAAGGCCAGCCCC
10._GC-01-73-4-9
AGGGGGGGTTGGAACCAAGGCCAGCCCC
11._RUQ_191
AGGGGGGGTTGGAACCAAGGCCAGCCCC
12._GC-01-73-4-9
AGGGGGGGTTGGAACCAAGGCCAGCCCC
13._RUQ_222
AAGGGGGGTTGGAACCAAGGCCGGCCCC
14._RUQ_814
AGGGGGGGTTGGAACCAAGGCCAGCCAA
15._GC-08-052-1-63
AAGGGGGGTTGGAACCAAGGCCGGCCCC
16._GU-156B_Fld#_198_Plt#_2
AGGGGGGGTTGGAACCAAGGCCGGCCCC
17._MITC-000403
AGGGGGGGTTGGAACCAAGGCCGGCCCC
18._RUQ_815
AAGGGGGGTTGGAACCAAGGCCGGCCCC
19._GC-08-268-8-40
AAGGGGGGTTGGAACCAAGGCCGGCCCC
20._RUQ_1543
AGGGGGGGTTGGAACCAAGGCCGGCCAA
21._GC-04-23-2-5
AAGGGGGGTTGGAACCAAGGCCGGCCAC
22._GC-08-170-4-13
AAGGGGGGTTGGAACCAAGGCCGGCCCC
23._RUQ_813
AAGGGGGGTTGGAACCAAGGCCGGCCCC
 5758596061626364656667686970
_Input profile
GGGGGGAGAACCAAAAAAAAAAAACCGG
1._GU_221_H_Fld#_162_Plt#_1
GGGGGGAGAACCAAAAAAAAAAAACCGG
2._RUQ_200
GGGGGGAGAACCAAAAAAAAAAAACCGG
3._GC-01-75-4-11
GGGGGGAGAACCAAAAAAAAAAAACCGG
4._RUQ_768
GGGGAGAGAACCAAAACCAAAAAACCGG
5._RUQ_1431
GGGGGGAGAACCAAAAACAAAAAACCGG
6._MITC-000612
GGGGGGAGAACCAAAAACAAAAAACCGG
7._GC-08-266-8-38
GGGGGGAGAACCAAAAACAAAAAACCGG
8._MITC-000615
GGGGGGGGAACCAAAACCAAAAAACCGG
9._MITC-000578
GGGGGGGGAACCAAAACCAAAAAACCGG
10._GC-01-73-4-9
GGGGGGGGAACCAAAACCAAAAAACCGG
11._RUQ_191
GGGGGGGGAACCAAAACCAAAAAACCGG
12._GC-01-73-4-9
GGGGGGGGAACCAAAACCAAAAAACCGG
13._RUQ_222
GGGGGGAGAACCAAAAACAAAAAACCGG
14._RUQ_814
GGGGGGGGAACCAAAAACAAAAAACCGG
15._GC-08-052-1-63
GGGGGGAGAACCAAAAACAAAAAACCGG
16._GU-156B_Fld#_198_Plt#_2
GGGGGGAAAACCAAAACCAAAAAACCGG
17._MITC-000403
GGGGGGAAAACCAAAACCAAAAAACCGG
18._RUQ_815
GGGGGGGGAACCAAAAAAAAAAAACCGG
19._GC-08-268-8-40
GGGGGGGGAACCAAAAAAAAAAAACCGG
20._RUQ_1543
GGGGAGAAAACCAAAAACAAAAAACCGG
21._GC-04-23-2-5
GGGGGGAGAACCAAAAACAAAAAACCGG
22._GC-08-170-4-13
GGGGAGAGAACCAAAACCAAAAAACCGG
23._RUQ_813
GGGGAGAGAACCAAAACCAAAAAACCGG
 7172737475767778798081   
_Input profile
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
1._GU_221_H_Fld#_162_Plt#_1
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
2._RUQ_200
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
3._GC-01-75-4-11
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
4._RUQ_768
CCGGGGGGCCGGGGGGAAAGAAX_XX_XX_X
5._RUQ_1431
CCGGGGGGCCGGGGGGAAAGAAX_XX_XX_X
6._MITC-000612
CCGGGGGGCCGGGGGGAAAGAAX_XX_XX_X
7._GC-08-266-8-38
CCGGGGGGCCGGGGGGAAAGAAX_XX_XX_X
8._MITC-000615
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
9._MITC-000578
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
10._GC-01-73-4-9
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
11._RUQ_191
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
12._GC-01-73-4-9
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
13._RUQ_222
CCGGGGGGCCGGGGGGAAAGAGX_XX_XX_X
14._RUQ_814
CCGGGGGGCCGGGGGGAAAAGGX_XX_XX_X
15._GC-08-052-1-63
CCGGGGGGCCGGGGGGAAAGAGX_XX_XX_X
16._GU-156B_Fld#_198_Plt#_2
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
17._MITC-000403
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
18._RUQ_815
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
19._GC-08-268-8-40
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
20._RUQ_1543
CCGGGGGGCCGGGGGGAAAGGGX_XX_XX_X
21._GC-04-23-2-5
CCGGGGGGCCGGGGGGAAAGAGX_XX_XX_X
22._GC-08-170-4-13
CCGGGGGGCCGGGGGGAAGGAGX_XX_XX_X
23._RUQ_813
CCGGGGGGCCGGGGGGAAGGAGX_XX_XX_X

Input profile: GU_221_/H GC-01-74-4-10

 
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 10, Tree: 6
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._GU_221_/H GU_221_H_Fld#_162_Plt#_1

identical
81 shared markers

USDA-TARS, United States of America
Location: Field: 162, Tree: 1
 Mars, 2018

2._GU_221_/C RUQ_200

95.1 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

3._GU_221_/C GC-01-75-4-11

95.1 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

4._GU_219_/F RUQ_768

93.8 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

5._GU_241_/P RUQ_1431

93.8 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

6._GU_241_/P MITC-000612

93.8 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

7._GU_241 GC-08-266-8-38

93.8 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

8._GU_144_/C MITC-000615

93.2 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

9._GU_144_/C MITC-000578

93.2 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

10._GU_144_/C GC-01-73-4-9

93.2 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

11._GU_144_/C RUQ_191

93.2 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

12._GU_144_/C GC-01-73-4-9

93.2 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

13._GU_147_/H RUQ_222

92.6 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

14._GU_243_/H RUQ_814

92 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

15._GU_335 GC-08-052-1-63

92 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 63, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

16._GU_156_B GU-156B_Fld#_198_Plt#_2

90.7 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 198, Tree: 2
 Mars, 2018

17._GU_156_B MITC-000403

90.7 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

18._GU_310_/P RUQ_815

90.7 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

19._GU_310 GC-08-268-8-40

90.7 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

20._GU_183_/G RUQ_1543

90.1 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

21._GU_353 GC-04-23-2-5

90.1 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 4, Block: 2, Rep: 5, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

22._GU_114 GC-08-170-4-13

90 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

23._GU_114_/P RUQ_813

90.1 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

 Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998