SNP Profiles matching NA 710

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 Key

 1234567891011121314
_Input profile
CCACAAAAAAGGGGCCAAGGGGAAAACC
1._RUQ_1504
CCACAAAAAAGGAGCCAAGGGGAAAACC
2._MITC-000043
CCACAAAAAAGGAGCCAAGGGGAAAACC
3._RUQ_515
CCACAAAAAAGGAGCCAAGGGGAAAACC
4._RUQ_801
CCAAAAACAAGGGGCCAAGGGGAAAACC
5._MITC-000373
CCCCAAACAAGGGGCCAAGGGGAAAACC
6._RUQ_691
CCACAAACAAGGGGCCAAGGGGAAAACC
7._GC-01-93-5-10
CCCCAAAAAAGGAGCCAAGGGGAAAACC
8._RUQ_897
CCACAACCAAGGAGCCAAGGGGAAAACC
9._SPA_16_[COL]_Fld#_178_Plt#_2
CCACAAACAAGGGGCCAAGGGGAAAACC
10._MITC-000018
CCCCAAACAAGGAGCCAAGGGGAAAACC
11._GC-01-101-5-18
CCACAACCAAGGAACCAAGGGGAAAACC
12._RUQ_877
CCCCAACCAAGGGGCCAAGGGGAAAACC
13._GC-01-118-6-15
CCAAAAACAAGGGGCCAAGGGGAAAACC
 1516171819202122232425262728
_Input profile
AAAAAAAAACGGAAGGCCAACGAACCGG
1._RUQ_1504
AAAAAAAAACGGAAGGCCAAGGAACCGG
2._MITC-000043
AAAAAAAAACGGAAGGCCAAGGAACCGG
3._RUQ_515
AAAAAAAAACGGAAGGCCAACGAACCGG
4._RUQ_801
AAAAAAAA_GGAAGGCCAACCAACCGG
5._MITC-000373
AAAAAAAAACGGAAGGCCAACGAACCGG
6._RUQ_691
AAACAAAA_GGAAGGACAACGAACC_
7._GC-01-93-5-10
AAAAAAAAAAGGAAGGCCAAGGAACCGG
8._RUQ_897
AAAAAAAAACGGAAGGCCAACGAACCGG
9._SPA_16_[COL]_Fld#_178_Plt#_2
AAACAAAAACGGAAGGACAACGAACCAG
10._MITC-000018
AAAAAAAAACGGAGGGCCAACGAAACGG
11._GC-01-101-5-18
AAAAAAAAACGGAAGGCCAACCAACCGG
12._RUQ_877
AAAAAAAAAAGGAAGGCCAAGGAACCGG
13._GC-01-118-6-15
AAAAAAAACCGGAAGGCCAACCAACCGG
 2930313233343536373839404142
_Input profile
GGAAGGAAGGAAGGGGGGCCTTTTGGGG
1._RUQ_1504
GGAAGGAAGGAAGGGGGGCCTTTTGGGG
2._MITC-000043
GGAAGGAAGGAAGGGGGGCCTTTTGGGG
3._RUQ_515
GGAAGGAAGGAGGGGGGGCCTTTTGGGG
4._RUQ_801
GGAAGGAAGGAAGGGGGGCCTTTTGGGG
5._MITC-000373
GGAAGGAAGGAGGGGGGGCCTTTTGGGG
6._RUQ_691
GGAAGGACCGAAGGAGGGCCTTTTGGGG
7._GC-01-93-5-10
GGAAGGAAGGAAGGGGGGCCTTTTGGGG
8._RUQ_897
GGAAGGAAGGAAGGGGGGCCTTTTGGGG
9._SPA_16_[COL]_Fld#_178_Plt#_2
GGAAGGACCGAAGGAGGGCCTTTTGGGG
10._MITC-000018
GGAAGGACGGAGGGGGGGCCTTTTGGGG
11._GC-01-101-5-18
GGAAGGAAGGAAGGGGGGCCTTTTGGGG
12._RUQ_877
GGAAGGAAGGAAGGGGGGCCTTTTGGGG
13._GC-01-118-6-15
GGAAGGAAGGAGGGGGGGCCTTTTGGGG
 4344454647484950515253545556
_Input profile
AAGGGGGGGGAAGGAAAACCGGCCGGGG
1._RUQ_1504
AAGGGGGGGGAAGGAAAACCGGCCGGGG
2._MITC-000043
AAGGGGGGGGAAGGAAAACCGGCCGGGG
3._RUQ_515
AAGGGGGGGGAAGGAAAACCGGCCGGGG
4._RUQ_801
AAGGGGGGGGAAGGAAAACCGGCCGGGG
5._MITC-000373
AAGGGGGGGGAAGGAAAACCGGCCGGGG
6._RUQ_691
AAGGAGGGGGAAGGAAAACCGGCCGGGG
7._GC-01-93-5-10
AAGGGGGGGGAAGGAAAACCGGCCGGGG
8._RUQ_897
AAAAGGGGGGAAGGAAAACCAACCGGGG
9._SPA_16_[COL]_Fld#_178_Plt#_2
AAGGAGGGGGAAGGAAAACCGGCCGGGG
10._MITC-000018
AAGGGGGGGGATGGAAACCCGGCCGGCG
11._GC-01-101-5-18
AAAAGGGGGGAAGGAAAACCAACCGGGG
12._RUQ_877
AAGGGGGGGGAAGGAAAACCAGCCGGGG
13._GC-01-118-6-15
AAAGGGGGGGAAGGAAAACCAACCGGGG
 5758596061626364656667686970
_Input profile
AAGGGGGGAAAACCGGAAAACCAAACCC
1._RUQ_1504
AAGGGGGGAAAACCGGAAAACCAAACCC
2._MITC-000043
AAGGGGGGAAAACCGGAAAACCAAACCC
3._RUQ_515
AAGGGGGGAAAACCGGAAAACCAACCCC
4._RUQ_801
AAGGGGGGAAAACCGGAAAACCAACCCC
5._MITC-000373
AAGGGGGGAAAACCGGAAAACCAACCCC
6._RUQ_691
AAGGGGGGAAAACCGGAAAACCAACCCG
7._GC-01-93-5-10
AAGGGGGGAAAACCGGAAAACCAACCCC
8._RUQ_897
AAGGGGGGAAAACCGGAAAACCAACCCC
9._SPA_16_[COL]_Fld#_178_Plt#_2
AAGGGGGGAAAACCGGAAAACCAACCCG
10._MITC-000018
AAGGGGGGAAAACCGGAAAACCAAACCC
11._GC-01-101-5-18
AAGGGGGGAAAACCGGAAAACCAACCCC
12._RUQ_877
AAGGGGGGAAAACCGGAAAACCAACCCC
13._GC-01-118-6-15
AAGGGGGGAAAACCGGAAAACCAACCCC
 717273747576777879808182  
_Input profile
GGCCGGGGGGCCGGGGGGAAAAAGX_XX_X
1._RUQ_1504
GGCCGGGGGGCCGGGGGGAAAAAGX_XX_X
2._MITC-000043
GGCCGGGGGGCCGGGGGGAAAAAGX_XX_X
3._RUQ_515
GGCCGGGGGGCCGGGGGGAAAAAGX_XX_X
4._RUQ_801
GGCCGGGGGGCCGGGGGGAAAAGGX_XX_X
5._MITC-000373
GGCGGGGGGGCCGGGGGGAAAAGGX_XX_X
6._RUQ_691
GGCGGGGGGGCCGGGGGGAAAAAGX_XX_X
7._GC-01-93-5-10
GGCCGGGGGGCCGGGGGGAAAAGGX_XX_X
8._RUQ_897
GGCCGGGGGGCCGGGGGGAAAAGGX_XX_X
9._SPA_16_[COL]_Fld#_178_Plt#_2
GGCGGGGGGGCCGGGGGGAAAAAGX_XX_X
10._MITC-000018
GGCGGGGGGGCCGGGGGGAAAGAGX_XX_X
11._GC-01-101-5-18
GGCCGGGGGGCCGGGGGGAAAAGGX_XX_X
12._RUQ_877
GGCGGGGGGGCCGGGGGGAAAAGGX_XX_X
13._GC-01-118-6-15
GGCCGGGGGGCCGGGGGGAAAAGGX_XX_X

Input profile: NA_710 RUQ_1588

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._NA_232 RUQ_1504

98.2 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._NA_232 MITC-000043

98.2 %
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

3._IMC_27 RUQ_515

97.6 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

4._NA_149 RUQ_801

94.4 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

5._POUND_26_/C MITC-000373

94.5 %
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

6._SPA_16_[COL] RUQ_691

93.1 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

7._POUND_2_/A GC-01-93-5-10

93.3 %
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 10, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

8._CRU_70 RUQ_897

93.3 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

9._SPA_16_[COL] SPA_16_[COL]_Fld#_178_Plt#_2

92.7 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 178, Tree: 2
 Mars, 2018

10._NA_255 MITC-000018

92.1 %
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

11._NA_286 GC-01-101-5-18

91.5 %
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 18, Tree: 11 > FP2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

12._CRU_100 RUQ_877

91.5 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

13._POUND_5_/C GC-01-118-6-15

90.9 %
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 15, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 

 Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998