SNP Profiles matching KER 3

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 Key

 1234567891011121314
_Input profile
CCAAAACCAAGGGGCCAAGGGGAAGGAA
1._GC-08-268-8-40
CCAAAACCAAGGGGCCAAGGGGAAGGAA
2._RUQ_815
CCAAAACCAAGGGGCCAAGGGGAAGGAA
3._MITC-000578
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
4._GC-01-73-4-9
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
5._MITC-000615
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
6._GC-01-73-4-9
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
7._RUQ_191
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
8._GC-04-23-2-5
CCAAAACCAAGGGGCCAAGGGGAAGGAA
9._GC-01-100-5-17
CCACAGCCAAGGGGCCAAGGGGAAGGAA
10._RUQ_880
CCACAGCCAAGGGGCCAAGGGGAAGGAA
11._RUQ_1069
CCAAAACCAAGGGGCCAAGGGGAAGGAA
12._GC-08-052-1-63
CCAAAACCAAGGGGCCAAGGGGAAGGAA
13._GC-03-19-2-8
CCAAGGCCAAGGGGCCAAGGGGAAGGAA
14._GC-01-75-4-11
CCAAAACCAAGGGGCCAAGGGGAAGGAA
15._RUQ_200
CCAAAACCAAGGGGCCAAGGGGAAGGAA
16._RUQ_222
CCAAAACCAAGGGGCCAAGGGGAAGGAA
17._GC-01-74-4-10
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
18._GU_221_H_Fld#_162_Plt#_1
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
 1516171819202122232425262728
_Input profile
AAAAAAGGGGAAGGCCGGCCGGAAAAGG
1._GC-08-268-8-40
AAAAAAAAGGAAGGAAGGCCGGAAAAGG
2._RUQ_815
AAAAAAAAGGAAGGAAGGCCGGAAAAGG
3._MITC-000578
AAAAAAAGGGAAGGAAGGCCGGAAAAGG
4._GC-01-73-4-9
AAAAAAAGGGAAGGAAGGCCGGAAAAGG
5._MITC-000615
AAAAAAAGGGAAGGAAGGCCGGAAAAGG
6._GC-01-73-4-9
AAAAAAAGGGAAGGAAGGCCGGAAAAGG
7._RUQ_191
AAAAAAAGGGAAGGAAGGCCGGAAAAGG
8._GC-04-23-2-5
AAAAAAGGGGAAGGAAGGCCGGAAAAGG
9._GC-01-100-5-17
AAAAAAAAGGAAGGAAGGCCGGAAAAGG
10._RUQ_880
AAAAAAAAGGAAGGAAGGCCGGAAAAGG
11._RUQ_1069
AAAAAAGGGGAAGGAAGGCCGGAAAAGG
12._GC-08-052-1-63
AAAAAAAGGGAAGGAAGGCGGGAAAAGG
13._GC-03-19-2-8
AAAAAAAAGGAAGGAAGGCCGGAAAAGG
14._GC-01-75-4-11
AAAAAAAGGGAAGGAAGGCCAGAAAAGG
15._RUQ_200
AAAAAAAGGGAAGGAAGGCCAGAAAAGG
16._RUQ_222
AAAAAAAAGGAAGGAAGGCCAGAAAAGG
17._GC-01-74-4-10
AAAAAAAGGGAAGGAAGGCCAGAAAAGG
18._GU_221_H_Fld#_162_Plt#_1
AAAAAAAGGGAAGGAAGGCCAGAAAAGG
 2930313233343536373839404142
_Input profile
TTGGAAGGGGGGGGGGCCTTTTAAGGAA
1._GC-08-268-8-40
TTGGAAGGGGGGGGGGCCTTATGGGGAA
2._RUQ_815
TTGGAAGGGGGGGGGGCCTTATGGGGAA
3._MITC-000578
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
4._GC-01-73-4-9
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
5._MITC-000615
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
6._GC-01-73-4-9
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
7._RUQ_191
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
8._GC-04-23-2-5
TTGGAAGGGGGGGGGGCCTTTTGGGGAA
9._GC-01-100-5-17
TTGGAAGGGGGGGGGG_TTTTGGGGAA
10._RUQ_880
TTGGAAGGGGGGGGGGCCTTTTGGGGAA
11._RUQ_1069
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
12._GC-08-052-1-63
TTGGAAGGGGGGGGGGCCTTATGGGGAA
13._GC-03-19-2-8
TTGGAAGGGGGGGGGG_TTATGGGGAA
14._GC-01-75-4-11
TTGGAAGGGGGGGGGGCCTTATGGGGAA
15._RUQ_200
TTGGAAGGGGGGGGGGCCTTATGGGGAA
16._RUQ_222
TTGGAAGGGGGGGGGGCCTTATGGGGAA
17._GC-01-74-4-10
TTGGAAGGGGGGGGGGCCTTAAAGGGAA
18._GU_221_H_Fld#_162_Plt#_1
TTGGAAGGGGGGGGGGCCTTAAAGGGAA
 4344454647484950515253545556
_Input profile
AAGGGGGGAAGGAACCAAGGCCAGCCCC
1._GC-08-268-8-40
AAGGGGGGTTGGAACCAAGGCCGGCCCC
2._RUQ_815
AAGGGGGGTTGGAACCAAGGCCGGCCCC
3._MITC-000578
AGGGGGGGTTGGAACCAAGGCCAGCCCC
4._GC-01-73-4-9
AGGGGGGGTTGGAACCAAGGCCAGCCCC
5._MITC-000615
AGGGGGGGTTGGAACCAAGGCCAGCCCC
6._GC-01-73-4-9
AGGGGGGGTTGGAACCAAGGCCAGCCCC
7._RUQ_191
AGGGGGGGTTGGAACCAAGGCCAGCCCC
8._GC-04-23-2-5
AAGGGGGGTTGGAACCAAGGCCGGCCAC
9._GC-01-100-5-17
AAGGGGGGTTGGAACCAAGGCCAGCCCC
10._RUQ_880
AAGGGGGGTTGGAACCAAGGCCAGCCCC
11._RUQ_1069
AAGGGGGGTTGGAACCAAGGCCGGCCAA
12._GC-08-052-1-63
AAGGGGGGTTGGAACCAAGGCCGGCCCC
13._GC-03-19-2-8
AAGGGGGGTTGGAACCAAGGCCGGCCCC
14._GC-01-75-4-11
AAGGGGGGTTGGAACCAAGGCCGGCCAC
15._RUQ_200
AAGGGGGGTTGGAACCAAGGCCGGCCAC
16._RUQ_222
AAGGGGGGTTGGAACCAAGGCCGGCCCC
17._GC-01-74-4-10
AGGGGGGGTTGGAACCAAGGCCGGCCCC
18._GU_221_H_Fld#_162_Plt#_1
AGGGGGGGTTGGAACCAAGGCCGGCCCC
 5758596061626364656667686970
_Input profile
GGGGGGGGAACCAAAAAAAAAAAACCGG
1._GC-08-268-8-40
GGGGGGGGAACCAAAAAAAAAAAACCGG
2._RUQ_815
GGGGGGGGAACCAAAAAAAAAAAACCGG
3._MITC-000578
GGGGGGGGAACCAAAACCAAAAAACCGG
4._GC-01-73-4-9
GGGGGGGGAACCAAAACCAAAAAACCGG
5._MITC-000615
GGGGGGGGAACCAAAACCAAAAAACCGG
6._GC-01-73-4-9
GGGGGGGGAACCAAAACCAAAAAACCGG
7._RUQ_191
GGGGGGGGAACCAAAACCAAAAAACCGG
8._GC-04-23-2-5
GGGGGGAGAACCAAAAACAAAAAACCGG
9._GC-01-100-5-17
GGGGGGAAAACCAAAACCAAAAAACCGG
10._RUQ_880
GGGGGGAAAACCAAAACCAAAAAACCGG
11._RUQ_1069
GGGGGGAAAACCAAAAACAAAAAACCGG
12._GC-08-052-1-63
GGGGGGAGAACCAAAAACAAAAAACCGG
13._GC-03-19-2-8
GGGGGGGGAACCAAAACCAAAAAACCGG
14._GC-01-75-4-11
GGGGGGAGAACCAAAAAAAAAAAACCGG
15._RUQ_200
GGGGGGAGAACCAAAAAAAAAAAACCGG
16._RUQ_222
GGGGGGAGAACCAAAAACAAAAAACCGG
17._GC-01-74-4-10
GGGGGGAGAACCAAAAAAAAAAAACCGG
18._GU_221_H_Fld#_162_Plt#_1
GGGGGGAGAACCAAAAAAAAAAAACCGG
 7172737475767778798081   
_Input profile
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
1._GC-08-268-8-40
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
2._RUQ_815
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
3._MITC-000578
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
4._GC-01-73-4-9
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
5._MITC-000615
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
6._GC-01-73-4-9
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
7._RUQ_191
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
8._GC-04-23-2-5
CCGGGGGGCCGGGGGGAAAGAGX_XX_XX_X
9._GC-01-100-5-17
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
10._RUQ_880
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
11._RUQ_1069
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
12._GC-08-052-1-63
CCGGGGGGCCGGGGGGAAAGAGX_XX_XX_X
13._GC-03-19-2-8
CCGGGGGGCCGGGGGGAAGGAAX_XX_XX_X
14._GC-01-75-4-11
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
15._RUQ_200
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
16._RUQ_222
CCGGGGGGCCGGGGGGAAAGAGX_XX_XX_X
17._GC-01-74-4-10
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X
18._GU_221_H_Fld#_162_Plt#_1
CCGGGGGGCCGGGGGGAAAAAAX_XX_XX_X

Input profile: KER_3 RUQ_406

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._GU_310 GC-08-268-8-40

93.2 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._GU_310_/P RUQ_815

93.2 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

3._GU_144_/C MITC-000578

92 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

4._GU_144_/C GC-01-73-4-9

92 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

5._GU_144_/C MITC-000615

92 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

6._GU_144_/C GC-01-73-4-9

92 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

7._GU_144_/C RUQ_191

92 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

8._GU_353 GC-04-23-2-5

92 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 4, Block: 2, Rep: 5, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

9._GU_175 GC-01-100-5-17

91.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 17, Tree: 6
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

10._CRU_156 RUQ_880

91.4 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

11._GU_195_/V RUQ_1069

90.7 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

12._GU_335 GC-08-052-1-63

90.7 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 63, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

13._GU_136_/H GC-03-19-2-8

90.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 8, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

14._GU_221_/C GC-01-75-4-11

90.7 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

15._GU_221_/C RUQ_200

90.7 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

16._GU_147_/H RUQ_222

90.1 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

17._GU_221_/H GC-01-74-4-10

90.1 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 10, Tree: 6
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

18._GU_221_/H GU_221_H_Fld#_162_Plt#_1

90.1 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 162, Tree: 1
 Mars, 2018

 

 Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998