SNP Profiles matching GU 243 /H

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
CCACAGCCAAGGGGCCAAGGGGAAGGAA
1._GC-01-76-4-12
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
2._GC-01-73-4-9
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
3._RUQ_1543
CCACGGCCAAGGGGCCAAGGGGAAGGAA
4._MITC-000612
CCACAGCCAAGGGGCCAAGGGGAAGGAA
5._GC-08-266-8-38
CCACAGCCAAGGGGCCAAGGGGAAGGAA
6._GC-01-74-4-10
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
7._RUQ_191
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
8._MITC-000578
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
9._GC-01-73-4-9
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
10._GU_221_H_Fld#_162_Plt#_1
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
11._RUQ_1431
CCACAGCCAAGGGGCCAAGGGGAAGGAA
12._MITC-000615
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
13._GC-01-73-4-9
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
14._GC-01-75-4-11
CCAAAACCAAGGGGCCAAGGGGAAGGAA
15._RUQ_200
CCAAAACCAAGGGGCCAAGGGGAAGGAA
16._GC-01-100-5-17
CCACAGCCAAGGGGCCAAGGGGAAGGAA
17._RUQ_188
CCACAACCAAGGGGCCAAGGGGAAGGAA
18._GC-01-94-5-11
CCCCGGCCAAGGGGCCAAGGGGAAGGAA
19._RUQ_195
CCCCGGCCAAGGGGCCAAGGGGAAGGAA
20._GC-01-94-5-11
CCCCGGCCAAGGGGCCAAGGGGAAGGAA
21._GC-01-78-4-14
CCACAACCAAGGGGCCAAGGGGAAGGAA
22._RUQ_880
CCACAGCCAAGGGGCCAAGGGGAAGGAA
23._RUQ_222
CCAAAACCAAGGGGCCAAGGGGAAGGAA
 1516171819202122232425262728
_Input profile
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
1._GC-01-76-4-12
AAAAAAAG_GGAAGGAAGGCGGGAAAA
2._GC-01-73-4-9
AAAAAAAGCCGGAAGGAAGGCGGGAAAA
3._RUQ_1543
AAAAAAAG_GGAAGGAAGGCGGGAAAA
4._MITC-000612
AAAAAAAACCGGAAGGAAGGCGAGAAAA
5._GC-08-266-8-38
AAAAAAAACCGGAAGGAAGGCGAGAAAA
6._GC-01-74-4-10
AAAAAAAG_GGAAGGAAGGCCAGAAAA
7._RUQ_191
AAAAAAAGCCGGAAGGAAGGCCGGAAAA
8._MITC-000578
AAAAAAAGCCGGAAGGAAGGCCGGAAAA
9._GC-01-73-4-9
AAAAAAAGCCGGAAGGAAGGCCGGAAAA
10._GU_221_H_Fld#_162_Plt#_1
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
11._RUQ_1431
AAAAAAAACCGGAAGGAAGGCGAGAAAA
12._MITC-000615
AAAAAAAGCCGGAAGGAAGGCCGGAAAA
13._GC-01-73-4-9
AAAAAAAG_GGAAGGAAGGCCGGAAAA
14._GC-01-75-4-11
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
15._RUQ_200
AAAAAAAGCCGGAAGGAAGGCCAGAAAA
16._GC-01-100-5-17
AAAAAAAA_GGAAGGAAGGCCGGAAAA
17._RUQ_188
AAAAAAAACCGGAAGGAAGGCGGGAAAA
18._GC-01-94-5-11
AAAAAAAA_GGAAGGAAGGCCAAAAAA
19._RUQ_195
AAAAAAAACCGGAAGGAAGGCCAAAAAA
20._GC-01-94-5-11
AAAAAAAACCGGAAGGAAGGCCAAAAAA
21._GC-01-78-4-14
AAAAAAAA_GGAAGGAAGGCGGGAAAA
22._RUQ_880
AAAAAAAACCGGAAGGAAGGCCGGAAAA
23._RUQ_222
AAAAAAAACCGGAAGGAAGGCCAGAAAA
 2930313233343536373839404142
_Input profile
GGTTGGAAGGGGGGGGGGCCTTTTGGGG
1._GC-01-76-4-12
GGTTGGAAGGGGGGGGGGCCTTTTGGGG
2._GC-01-73-4-9
GGTTGGAAGGGGGGGGGGCCTTTTGGGG
3._RUQ_1543
GGTTGGAAGGGGGGGGGGCCTTATAGGG
4._MITC-000612
GGTTGGAAGGGGGGGGGGCCTTATAGGG
5._GC-08-266-8-38
GGTTGGAAGGGGGGGGGGCCTTATAGGG
6._GC-01-74-4-10
GGTTGGAAGGGGGGGGGGCCTTAAAGGG
7._RUQ_191
GGTTGGAAGGGGGGGGGGCCTTAAGGGG
8._MITC-000578
GGTTGGAAGGGGGGGGGGCCTTAAGGGG
9._GC-01-73-4-9
GGTTGGAAGGGGGGGGGGCCTTAAGGGG
10._GU_221_H_Fld#_162_Plt#_1
GGTTGGAAGGGGGGGGGGCCTTAAAGGG
11._RUQ_1431
GGTTGGAAGGGGGGGGGGCCTTATAGGG
12._MITC-000615
GGTTGGAAGGGGGGGGGGCCTTAAGGGG
13._GC-01-73-4-9
GGTTGGAAGGGGGGGGGGCCTTAAGGGG
14._GC-01-75-4-11
GGTTGGAAGGGGGGGGGGCCTTATGGGG
15._RUQ_200
GGTTGGAAGGGGGGGGGGCCTTATGGGG
16._GC-01-100-5-17
GGTTGGAAGGGGGGGGGG_TTTTGGGG
17._RUQ_188
GGTTGGAAGGGGGGGGGGCCTTATGGGG
18._GC-01-94-5-11
GGTTGGAAGGGGGGGGGGCCTTTTGGGG
19._RUQ_195
GGTTGGAAGGGGGGGGGGCCTTTTGGGG
20._GC-01-94-5-11
GGTTGGAAGGGGGGGGGG_TTTTGGGG
21._GC-01-78-4-14
GGTTGGAAGGGGGGGGGGCCTTATGGGG
22._RUQ_880
GGTTGGAAGGGGGGGGGGCCTTTTGGGG
23._RUQ_222
GGTTGGAAGGGGGGGGGGCCTTATGGGG
 4344454647484950515253545556
_Input profile
AAAGGGGGGGTTGGAACCAAGGCCAGCC
1._GC-01-76-4-12
AAAAGGGGGGTTGGAACCAAGGCCGGCC
2._GC-01-73-4-9
AAAAGGGGGGTTGGAACCAAGGCCGGCC
3._RUQ_1543
AAAGGGGGGGTTGGAACCAAGGCCGGCC
4._MITC-000612
AAAAGGGGGGTTGGAACCAAGGCCGGCC
5._GC-08-266-8-38
AAAAGGGGGGTTGGAACCAAGGCCGGCC
6._GC-01-74-4-10
AAAGGGGGGGTTGGAACCAAGGCCGGCC
7._RUQ_191
AAAGGGGGGGTTGGAACCAAGGCCAGCC
8._MITC-000578
AAAGGGGGGGTTGGAACCAAGGCCAGCC
9._GC-01-73-4-9
AAAGGGGGGGTTGGAACCAAGGCCAGCC
10._GU_221_H_Fld#_162_Plt#_1
AAAGGGGGGGTTGGAACCAAGGCCGGCC
11._RUQ_1431
AAAAGGGGGGTTGGAACCAAGGCCGGCC
12._MITC-000615
AAAGGGGGGGTTGGAACCAAGGCCAGCC
13._GC-01-73-4-9
AAAGGGGGGGTTGGAACCAAGGCCAGCC
14._GC-01-75-4-11
AAAAGGGGGGTTGGAACCAAGGCCGGCC
15._RUQ_200
AAAAGGGGGGTTGGAACCAAGGCCGGCC
16._GC-01-100-5-17
AAAAGGGGGGTTGGAACCAAGGCCAGCC
17._RUQ_188
AAAGGGGGGGTTGGAACCAAGGCCGGCC
18._GC-01-94-5-11
AAAAGGGGGGTTGGAACCAAGGCCGGCC
19._RUQ_195
AAAAGGGGGGTTGGAACCAAGGCCGGCC
20._GC-01-94-5-11
AAAAGGGGGGTTGGAACCAAGGCCGGCC
21._GC-01-78-4-14
AAAGGGGGGGTTGGAACCAAGGCCGGCC
22._RUQ_880
AAAAGGGGGGTTGGAACCAAGGCCAGCC
23._RUQ_222
AAAAGGGGGGTTGGAACCAAGGCCGGCC
 5758596061626364656667686970
_Input profile
AAGGGGGGGGAACCAAAAACAAAAAACC
1._GC-01-76-4-12
ACGGGGGGGGAACCAAAACCAAAAAACC
2._GC-01-73-4-9
ACGGGGGGGGAACCAAAACCAAAAAACC
3._RUQ_1543
AAGGGGAGAAAACCAAAAACAAAAAACC
4._MITC-000612
ACGGGGGGAGAACCAAAAACAAAAAACC
5._GC-08-266-8-38
ACGGGGGGAGAACCAAAAACAAAAAACC
6._GC-01-74-4-10
CCGGGGGGAGAACCAAAAAAAAAAAACC
7._RUQ_191
CCGGGGGGGGAACCAAAACCAAAAAACC
8._MITC-000578
CCGGGGGGGGAACCAAAACCAAAAAACC
9._GC-01-73-4-9
CCGGGGGGGGAACCAAAACCAAAAAACC
10._GU_221_H_Fld#_162_Plt#_1
CCGGGGGGAGAACCAAAAAAAAAAAACC
11._RUQ_1431
ACGGGGGGAGAACCAAAAACAAAAAACC
12._MITC-000615
CCGGGGGGGGAACCAAAACCAAAAAACC
13._GC-01-73-4-9
CCGGGGGGGGAACCAAAACCAAAAAACC
14._GC-01-75-4-11
ACGGGGGGAGAACCAAAAAAAAAAAACC
15._RUQ_200
ACGGGGGGAGAACCAAAAAAAAAAAACC
16._GC-01-100-5-17
CCGGGGGGAAAACCAAAACCAAAAAACC
17._RUQ_188
ACGGGGGGGGAACCAAAACCAAAAAACC
18._GC-01-94-5-11
CCGGGGGGGGAACCAAAAACAAAAAACC
19._RUQ_195
CCGGGGGGGGAACCAAAAACAAAAAACC
20._GC-01-94-5-11
CCGGGGGGGGAACCAAAAACAAAAAACC
21._GC-01-78-4-14
ACGGGGGGGGAACCAAAACCAAAAAACC
22._RUQ_880
CCGGGGGGAAAACCAAAACCAAAAAACC
23._RUQ_222
CCGGGGGGAGAACCAAAAACAAAAAACC
 717273747576777879808182  
_Input profile
GGCCGGGGGGCCGGGGGGAAAAGGX_XX_X
1._GC-01-76-4-12
GGCCGGGGGGCCGGGGGGAAAGGGX_XX_X
2._GC-01-73-4-9
GGCCGGGGGGCCGGGGGGAAAGGGX_XX_X
3._RUQ_1543
GGCCGGGGGGCCGGGGGGAAAGGGX_XX_X
4._MITC-000612
GGCCGGGGGGCCGGGGGGAAAGAAX_XX_X
5._GC-08-266-8-38
GGCCGGGGGGCCGGGGGGAAAGAAX_XX_X
6._GC-01-74-4-10
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
7._RUQ_191
GGCCGGGGGGCCGGGGGGAAGGAAX_XX_X
8._MITC-000578
GGCCGGGGGGCCGGGGGGAAGGAAX_XX_X
9._GC-01-73-4-9
GGCCGGGGGGCCGGGGGGAAGGAAX_XX_X
10._GU_221_H_Fld#_162_Plt#_1
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
11._RUQ_1431
GGCCGGGGGGCCGGGGGGAAAGAAX_XX_X
12._MITC-000615
GGCCGGGGGGCCGGGGGGAAGGAAX_XX_X
13._GC-01-73-4-9
GGCCGGGGGGCCGGGGGGAAGGAAX_XX_X
14._GC-01-75-4-11
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
15._RUQ_200
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
16._GC-01-100-5-17
GGCCGGGGGGCCGGGGGGAAGGAAX_XX_X
17._RUQ_188
GGCCGGGGGGCCGGGGGGAAGGAGX_XX_X
18._GC-01-94-5-11
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
19._RUQ_195
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
20._GC-01-94-5-11
GGCCGGGGGGCCGGGGGGAAAAAAX_XX_X
21._GC-01-78-4-14
GGCCGGGGGGCCGGGGGGAAGGAGX_XX_X
22._RUQ_880
GGCCGGGGGGCCGGGGGGAAGGAAX_XX_X
23._RUQ_222
GGCCGGGGGGCCGGGGGGAAAGAGX_XX_X

Input profile: GU_243_/H RUQ_814

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._GU_296_/H GC-01-76-4-12

92 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

2._GU_144_/C GC-01-73-4-9

92.1 %
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

3._GU_183_/G RUQ_1543

92 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

4._GU_241_/P MITC-000612

91.5 %
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

5._GU_241 GC-08-266-8-38

91.5 %
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

6._GU_221_/H GC-01-74-4-10

91.4 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 10, Tree: 6
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

7._GU_144_/C RUQ_191

91.5 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

8._GU_144_/C MITC-000578

91.5 %
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

9._GU_144_/C GC-01-73-4-9

91.5 %
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

10._GU_221_/H GU_221_H_Fld#_162_Plt#_1

91.5 %
82 shared markers

USDA-TARS, United States of America
Location: Field: 162, Tree: 1
 Mars, 2018

11._GU_241_/P RUQ_1431

91.5 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

12._GU_144_/C MITC-000615

91.5 %
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

13._GU_144_/C GC-01-73-4-9

91.4 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

14._GU_221_/C GC-01-75-4-11

90.9 %
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

15._GU_221_/C RUQ_200

90.9 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

16._GU_175 GC-01-100-5-17

90 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 17, Tree: 6
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

17._GU_125_/C RUQ_188

90.2 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

18._GU_171_/C GC-01-94-5-11

90.1 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 11, Tree: 7
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

19._GU_171_/C RUQ_195

90.2 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

20._GU_171_/C GC-01-94-5-11

90.1 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 11, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

21._GU_154_/C GC-01-78-4-14

90.1 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 14, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

22._CRU_156 RUQ_880

90.2 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

23._GU_147_/H RUQ_222

90.2 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

 Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998