SNP Profiles matching GU 183 /G

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 Key

 1234567891011121314
_Input profile
CCACGGCCAAGGGGCCAAGGGGAAGGAA
1._RUQ_1431
CCACAGCCAAGGGGCCAAGGGGAAGGAA
2._GC-08-266-8-38
CCACAGCCAAGGGGCCAAGGGGAAGGAA
3._MITC-000612
CCACAGCCAAGGGGCCAAGGGGAAGGAA
4._GC-01-80-4-16
CCAAGGCCAAGGGGCCAAGGGGAAGGAA
5._GC-08-052-1-63
CCAAAACCAAGGGGCCAAGGGGAAGGAA
6._RUQ_228
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
7._MITC-000670
CCACGGCCAAGGGGCCAAGGGGAAGGAA
8._RUQ_814
CCACAGCCAAGGGGCCAAGGGGAAGGAA
9._GC-01-116-6-13
CCACGGCCAAGGGGCCAAGGGGAAGGAA
10._GU_185_Fld#_200_Plt#_1
CCACAGCCAAGGGGCCAAGGGGAAGGAA
11._GC-01-73-4-9
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
12._GC-01-76-4-12
CCAAAGCCAAGGGGCCAAGGGGAAGGAA
13._MITC-000047
CCACAGCCAAGGGGCCAAGGGGAAGGAA
14._GC-01-78-4-14
CCACAACCAAGGGGCCAAGGGGAAGGAA
15._RUQ_188
CCACAACCAAGGGGCCAAGGGGAAGGAA
 1516171819202122232425262728
_Input profile
AAAAAAAGGGAAGGAAGGCGGGAAAAGG
1._RUQ_1431
AAAAAAAAGGAAGGAAGGCGAGAAAAGG
2._GC-08-266-8-38
AAAAAAAAGGAAGGAAGGCGAGAAAAGG
3._MITC-000612
AAAAAAAAGGAAGGAAGGCGAGAAAAGG
4._GC-01-80-4-16
AAAAAAAAGGAAGGAAGGGGGGAAAAGG
5._GC-08-052-1-63
AAAAAAAGGGAAGGAAGGCGGGAAAAGG
6._RUQ_228
AAAAAAAAGGAAGGACGGCGGGAAAAGG
7._MITC-000670
AAAAAAAAGGAAGGAAGGCGGGAAAAGG
8._RUQ_814
AAAAAAAGGGAAGGAAGGCCAGAAAAGG
9._GC-01-116-6-13
AAAAAAAAGGAAGGAAGGCGGGAAAAGG
10._GU_185_Fld#_200_Plt#_1
AAAAAAAAGGAAGGACGGGGGGAAAAGG
11._GC-01-73-4-9
AAAAAAAGGGAAGGAAGGCGGGAAAAGG
12._GC-01-76-4-12
AAAAAAAGGGAAGGAAGGCGGGAAAAGG
13._MITC-000047
AAAAAAAAGGAAGGACGGGGGGAAAAGG
14._GC-01-78-4-14
AAAAAAAAGGAAGGAAGGCGGGAAAAGG
15._RUQ_188
AAAAAAAAGGAAGGAAGGCGGGAAAAGG
 2930313233343536373839404142
_Input profile
TTGGAAGGGGGGGGGGCCTTATAGGGAA
1._RUQ_1431
TTGGAAGGGGGGGGGGCCTTATAGGGAA
2._GC-08-266-8-38
TTGGAAGGGGGGGGGGCCTTATAGGGAA
3._MITC-000612
TTGGAAGGGGGGGGGGCCTTATAGGGAA
4._GC-01-80-4-16
TTGGAAGGGGGGGGGG_TTATGGGGAA
5._GC-08-052-1-63
TTGGAAGGGGGGGGGGCCTTATGGGGAA
6._RUQ_228
TTGGAAGGGGGGGGGGCCTTATGGGGAA
7._MITC-000670
TTGGAAGGGGGGGGGGCCTTATGGGGAA
8._RUQ_814
TTGGAAGGGGGGGGGGCCTTTTGGGGAA
9._GC-01-116-6-13
TTGGAAGGGGGGGGGG_TTATGGGGAA
10._GU_185_Fld#_200_Plt#_1
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
11._GC-01-73-4-9
TTGGAAGGGGGGGGGGCCTTTTGGGGAA
12._GC-01-76-4-12
TTGGAAGGGGGGGGGGCCTTTTGGGGAA
13._MITC-000047
TTGGAAGGGGGGGGGGCCTTAAGGGGAA
14._GC-01-78-4-14
TTGGAAGGGGGGGGGGCCTTATGGGGAA
15._RUQ_188
TTGGAAGGGGGGGGGGCCTTATGGGGAA
 4344454647484950515253545556
_Input profile
AGGGGGGGTTGGAACCAAGGCCGGCCAA
1._RUQ_1431
AAGGGGGGTTGGAACCAAGGCCGGCCAC
2._GC-08-266-8-38
AAGGGGGGTTGGAACCAAGGCCGGCCAC
3._MITC-000612
AAGGGGGGTTGGAACCAAGGCCGGCCAC
4._GC-01-80-4-16
AGGGGGGGTTGGAACCAAGGCCGGCCAA
5._GC-08-052-1-63
AAGGGGGGTTGGAACCAAGGCCGGCCCC
6._RUQ_228
AGGGGGGGTTGGAACCAAGGCCGGCCAA
7._MITC-000670
AAGGGGGGTTGGAACCAAGGCCGGCCAC
8._RUQ_814
AGGGGGGGTTGGAACCAAGGCCAGCCAA
9._GC-01-116-6-13
AAGGGGGGTTGGAACCAAGGCCGGCCAC
10._GU_185_Fld#_200_Plt#_1
AGGGGGGGTTGGAACCAAGGCCGGCCAC
11._GC-01-73-4-9
AAGGGGGGTTGGAACCAAGGCCGGCCAC
12._GC-01-76-4-12
AAGGGGGGTTGGAACCAAGGCCGGCCAC
13._MITC-000047
AGGGGGGGTTGGAACCAAGGCCGGCCAC
14._GC-01-78-4-14
AGGGGGGGTTGGAACCAAGGCCGGCCAC
15._RUQ_188
AGGGGGGGTTGGAACCAAGGCCGGCCAC
 5758596061626364656667686970
_Input profile
GGGGAGAAAACCAAAAACAAAAAACCGG
1._RUQ_1431
GGGGGGAGAACCAAAAACAAAAAACCGG
2._GC-08-266-8-38
GGGGGGAGAACCAAAAACAAAAAACCGG
3._MITC-000612
GGGGGGAGAACCAAAAACAAAAAACCGG
4._GC-01-80-4-16
GGGGAGGGAACCAAAACCAAAAAACCGG
5._GC-08-052-1-63
GGGGGGAGAACCAAAAACAAAAAACCGG
6._RUQ_228
GGGGGGAAAACCAAAACCAAAAAACCGG
7._MITC-000670
GGGGGGGGAACCAAAACCAAAAAACCGG
8._RUQ_814
GGGGGGGGAACCAAAAACAAAAAACCGG
9._GC-01-116-6-13
GGGGGGGGAACCAAAACCAAAAAACCGG
10._GU_185_Fld#_200_Plt#_1
GGGGAGAAAACCAAAACCAAAAAACCGG
11._GC-01-73-4-9
GGGGGGGGAACCAAAACCAAAAAACCGG
12._GC-01-76-4-12
GGGGGGGGAACCAAAACCAAAAAACCGG
13._MITC-000047
GGGGAGAAAACCAAAACCAAAAAACCGG
14._GC-01-78-4-14
GGGGGGGGAACCAAAACCAAAAAACCGG
15._RUQ_188
GGGGGGGGAACCAAAACCAAAAAACCGG
 7172737475767778798081   
_Input profile
CCGGGGGGCCGGGGGGAAAGGGX_XX_XX_X
1._RUQ_1431
CCGGGGGGCCGGGGGGAAAGAAX_XX_XX_X
2._GC-08-266-8-38
CCGGGGGGCCGGGGGGAAAGAAX_XX_XX_X
3._MITC-000612
CCGGGGGGCCGGGGGGAAAGAAX_XX_XX_X
4._GC-01-80-4-16
CCGGGGGGCCGGGGGGAAGGGGX_XX_XX_X
5._GC-08-052-1-63
CCGGGGGGCCGGGGGGAAAGAGX_XX_XX_X
6._RUQ_228
CCGGGGGGCCGGGGGGAAGGAGX_XX_XX_X
7._MITC-000670
CCGGGGGGCCGGGGGGAAGGGGX_XX_XX_X
8._RUQ_814
CCGGGGGGCCGGGGGGAAAAGGX_XX_XX_X
9._GC-01-116-6-13
CCGGGGGGCCGGGGGGAAGGGGX_XX_XX_X
10._GU_185_Fld#_200_Plt#_1
CCGGGGGGCCGGGGGGAAGGAGX_XX_XX_X
11._GC-01-73-4-9
CCGGGGGGCCGGGGGGAAAGGGX_XX_XX_X
12._GC-01-76-4-12
CCGGGGGGCCGGGGGGAAAGGGX_XX_XX_X
13._MITC-000047
CCGGGGGGCCGGGGGGAAGGAGX_XX_XX_X
14._GC-01-78-4-14
CCGGGGGGCCGGGGGGAAGGAGX_XX_XX_X
15._RUQ_188
CCGGGGGGCCGGGGGGAAGGAGX_XX_XX_X

Input profile: GU_183_/G RUQ_1543

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

1._GU_241_/P RUQ_1431

92.6 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._GU_241 GC-08-266-8-38

92.6 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

3._GU_241_/P MITC-000612

92.6 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

4._GU_147_/H GC-01-80-4-16

91.3 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 16, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

5._GU_335 GC-08-052-1-63

91.4 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 8, Block: 1, Rep: 63, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

6._GU_249_/H RUQ_228

90.7 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

7._GU_133_/C MITC-000670

90.7 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

8._GU_243_/H RUQ_814

90.7 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

9._GU_133_/C GC-01-116-6-13

90.6 %
80 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

10._GU_185 GU_185_Fld#_200_Plt#_1

90.1 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 200, Tree: 1
 Mars, 2018

11._GU_144_/C GC-01-73-4-9

90.1 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 9, Tree: 3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

12._GU_296_/H GC-01-76-4-12

90.1 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

13._GU_185_/G MITC-000047

90.1 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

14._GU_154_/C GC-01-78-4-14

90.1 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 14, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

15._GU_125_/C RUQ_188

90.1 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

 Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1383 20TcSNP1414
21TcSNP1439 22TcSNP144 23TcSNP1442 24TcSNP1458 25TcSNP1484
26TcSNP150 27TcSNP151 28TcSNP1520 29TcSNP154 30TcSNP174
31TcSNP193 32TcSNP226 33TcSNP230 34TcSNP240 35TcSNP242
36TcSNP25 37TcSNP28 38TcSNP316 39TcSNP32 40TcSNP329
41TcSNP364 42TcSNP372 43TcSNP413 44TcSNP418 45TcSNP42
46TcSNP429 47TcSNP430 48TcSNP448 49TcSNP497 50TcSNP521
51TcSNP529 52TcSNP547 53TcSNP560 54TcSNP561 55TcSNP577
56TcSNP591 57TcSNP60 58TcSNP602 59TcSNP619 60TcSNP653
61TcSNP689 62TcSNP723 63TcSNP731 64TcSNP75 65TcSNP751
66TcSNP776 67TcSNP799 68TcSNP823 69TcSNP836 70TcSNP860
71TcSNP872 72TcSNP891 73TcSNP894 74TcSNP899 75TcSNP90
76TcSNP917 77TcSNP929 78TcSNP944 79TcSNP953 80TcSNP994
81TcSNP998