SNP Profiles matching SCA11

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	CC	TT	GG	CC	CG	CT	CT	GG	GG	GG	TT	AA	CC
1._RUQ_1064	GG	CC	TT	GG	CC	CG	CT	CT	GG	GG	GG	TT	AA	CC
2._GC-01-009-1-09	GG	CC	TT	GG	CC	CG	CT	CT	GG	CG	_	TT	AA	CC
3._GC-01-009-1-09	GG	CC	TT	GG	CC	CG	CT	CT	GG	CG	_	TT	AA	CC
4._NA32	CG	CC	TT	GG	CT	CC	CT	CC	GG	GG	GG	TT	AA	CC
5._RUQ_1230	CG	CC	TT	GG	CT	CG	CT	CC	GG	GG	GG	TT	AA	CC
6._GC-01-009-1-09	GG	CC	TT	GG	CC	CG	CT	CT	GG	CG	_	TT	AA	CC
7._GC-01-009-1-09	GG	CC	TT	GG	CC	CG	CT	CT	GG	CG	_	TT	AA	CC
8._GC-01-009-1-09	GG	CC	TT	GG	CC	CG	CT	CT	GG	CG	_	TT	AA	CC
9._GC-01-009-1-09	GG	CC	TT	GG	CC	CG	CT	CT	GG	CG	_	TT	AA	CC
10._GC-01-009-1-09	GG	CC	TT	GG	CC	CG	CT	CT	GG	CG	_	TT	AA	CC
11._GC-01-009-1-09	GG	CC	TT	GG	CC	CG	CT	CT	GG	CG	_	TT	AA	CC
12._GC-01-009-1-09	GG	CC	TT	GG	CC	CG	CT	CT	GG	CG	_	TT	AA	CC
13._GC-01-009-1-09	GG	CC	TT	GG	CC	CG	CT	CT	GG	CG	_	TT	AA	CC

	15	16	17	18	19	20	21	22	23	24	25	26
_Input profile	AA	GG	CC	CT	AT	GG	AG	CG	AA	GG	CC	AC	X_X	X_X
1._RUQ_1064	AA	GG	CC	CT	AT	GG	AG	CG	AA	GG	CC	AC	X_X	X_X
2._GC-01-009-1-09	AA	GG	CC	CT	AA	GG	AG	_	AA	GG	CT	CC	X_X	X_X
3._GC-01-009-1-09	AA	GG	CC	CT	_	GG	AG	GG	AA	GG	CT	CC	X_X	X_X
4._NA32	AA	GG	CC	CT	AT	GG	AG	CG	AA	GG	CT	AC	X_X	X_X
5._RUQ_1230	AC	GG	CC	CT	AT	GG	AG	CG	AA	GG	CT	AC	X_X	X_X
6._GC-01-009-1-09	AA	GG	CC	CT	AA	GG	AG	GG	AA	GG	CT	CC	X_X	X_X
7._GC-01-009-1-09	AA	GG	CC	CT	AA	GG	AG	GG	AA	GG	CT	CC	X_X	X_X
8._GC-01-009-1-09	AA	GG	CC	CT	AA	GG	AG	GG	AA	GG	CT	CC	X_X	X_X
9._GC-01-009-1-09	AA	GG	CC	CT	AA	GG	AG	GG	AA	GG	CT	CC	X_X	X_X
10._GC-01-009-1-09	AA	GG	CC	CT	AA	GG	AG	GG	AA	GG	CT	CC	X_X	X_X
11._GC-01-009-1-09	AA	GG	CC	CT	AA	GG	AG	GG	AA	GG	CT	CC	X_X	X_X
12._GC-01-009-1-09	AA	GG	CC	CT	AA	GG	AG	GG	AA	GG	CT	CC	X_X	X_X
13._GC-01-009-1-09	AA	GG	CC	CT	AA	GG	AG	GG	AA	GG	CT	CC	X_X	X_X

Input profile: SCA_11 RUQ_1686

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

1._SCA_9 RUQ_1064

identical
26 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

2._HUALLAGA_48 GC-01-009-1-09

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

3._HUALLAGA_48 GC-01-009-1-09

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

4._NA_32 NA32

90.4 %
26 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

5._NA_26 RUQ_1230

90.4 %
26 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

6._HUALLAGA_48 GC-01-009-1-09

90 %
25 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

7._HUALLAGA_48 GC-01-009-1-09

90 %
25 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

8._HUALLAGA_48 GC-01-009-1-09

90 %
25 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

9._HUALLAGA_48 GC-01-009-1-09

90 %
25 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

10._HUALLAGA_48 GC-01-009-1-09

90 %
25 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

11._HUALLAGA_48 GC-01-009-1-09

90 %
25 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

12._HUALLAGA_48 GC-01-009-1-09

90 %
25 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

Notes: 14

13._HUALLAGA_48 GC-01-009-1-09

90 %
25 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 16

Notes: 16 > FP3

Key to SNP Markers

Key to SNP Markers

1	TcSNP1458	2	TcSNP1439	3	TcSNP1126	4	TcSNP1111	5	TcSNP1060
6	TcSNP1041	7	TcSNP994	8	TcSNP891	9	TcSNP878	10	TcSNP872
11	TcSNP860	12	TcSNP751	13	TcSNP606	14	TcSNP602	15	TcSNP591
16	TcSNP577	17	TcSNP448	18	TcSNP413	19	TcSNP372	20	TcSNP364
21	TcSNP230	22	TcSNP226	23	TcSNP193	24	TcSNP174	25	TcSNP151
26	TcSNP144