SNP Profiles of ICS-1   View Data

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 Key

 1234567891011121314
_Input profile
AAAATTACGGAGCCCCTTCTGGCTCCCC
1._ICS_1
AAAATTAC____TTCTGG_CC_
2._ICS_1
AAAATTAC____TTCTGG_CC_
3._ICS_1
AAAATTAC____TTCTGG_CC_
4._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
5._ICS_1
AAAATTAC____TTCTGG_CC_
6._ICS_1
AAAATTAC____TTCTGG_CC_
7._ICS_1
AAAATTAC____TTCTGG_CC_
8._ICS_1
AAAATTAC____TTCTGG_CC_
9._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
10._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
11._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
12._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
13._RUQ_847
AAAATTAC____TTCTGG_CC_
14._RUQ_847
___AC____TT___CC_
15._RUQ_847
AAAACTAC____TTCTGG_CC_
16._RUQ_847
__TTAA__CT_TT__CTCC_
17._ICS1
___CC____CC___CT_
18._ICS_1
AAACCTCC____CCCCGG_CC_
19._RUQ_847
AAAA_ACGGAG_GGAA_GGAGGGGG
20._MITC-000297
AAAA_ACGGAG_GGAA_GGAGGGGG
21._ICS_1_Fld#_73_Plt#_2
AAAA_ACGGAG_GGAA_GGAGGGGG
 1516171819202122232425262728
_Input profile
ATCCAAAAGGCGGGCTAGTTAGATATCG
1._ICS_1
___AA__GG____ATAT_
2._ICS_1
___AA__GG____ATAT_
3._ICS_1
___AA__GG____ATAT_
4._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
5._ICS_1
___AA__GG____ATAT_
6._ICS_1
___AA__GG____ATAT_
7._ICS_1
___AA__GG____ATAT_
8._ICS_1
___AA__GG____ATAT_
9._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
10._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
11._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
12._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
13._RUQ_847
___AA__GG____ATAT_
14._RUQ_847
__AG__CG_CT__AG_ATCG
15._RUQ_847
___AA__GG____ATAT_
16._RUQ_847
_____CG____AG_ATCG
17._ICS1
__AG__GG_CT__AG_TTGG
18._ICS_1
___GG__CG____ATAA_
19._RUQ_847
ATCCAGAACC_GGAGAGAAAGATATCG
20._MITC-000297
ATCCAGAACC_GGAGAGAAAGATATCG
21._ICS_1_Fld#_73_Plt#_2
ATCCAGAACC_GGAGAGAAAGATATCG
 2930313233343536373839404142
_Input profile
CGAACTGGAAAAAGGTGGGTAACTAACC
1._ICS_1
CGAA____AGGT__AA___
2._ICS_1
CGAA____AGGT__AA___
3._ICS_1
_AA____AGGT__AA___
4._NA
CGAACTGGAAAAAGGTGGGTAACTAACC
5._ICS_1
CGAA____AGGT__AA___
6._ICS_1
CGAA____AGGT__AA___
7._ICS_1
CGAA____AGGT__AA___
8._ICS_1
CGAA____AGGT__AA___
9._NA
CGAACTGGAAAAAGGTGGGTAACTAACC
10._NA
CGAACTGGAAAAAGGTGGGTAACTAACC
11._NA
CGAACTGGAAAAAGGTGGGTAACTAACC
12._NA
CGAACTGGAAAAAGGTGGGTAACTAACC
13._RUQ_847
CGAA____AGGT__AG___
14._RUQ_847
CG___AA____GT_CT__
15._RUQ_847
CGAA____AGGT__AG___
16._RUQ_847
CG___AAAAAGGT__AACT__
17._ICS1
CG___GG____GT_CC__
18._ICS_1
GGAA____AGGT__GG___
19._RUQ_847
CGAAAGCCAAAAAGACCCACAAAGAAGG
20._MITC-000297
CGAAAGCCAAAAAGACCCACAAAGAAGG
21._ICS_1_Fld#_73_Plt#_2
CGAAAGCCAAAAAGACCCACAAAGAAGG
 4344454647484950515253545556
_Input profile
GTAACCGGAGAGTTCCGGGGGTTTCCTT
1._ICS_1
__CC_________CCTT
2._ICS_1
__CC_________CCTT
3._ICS_1
__CC_________CCTT
4._NA
GTAACCGGAGAGTTCCGGGGGTTTCCTT
5._ICS_1
__CC_________CCTT
6._ICS_1
__CC_________CCTT
7._ICS_1
__CC_________CCTT
8._ICS_1
__CC_________CCTT
9._NA
GTAACCGGAGAGTTCCGGGGGTTTCCTT
10._NA
GTAACCGGAGAGTTCCGGGGGTTTCCTT
11._NA
GTAACCGGAGAGTTCCGGGGGTTTCCTT
12._NA
GTAACCGGAGAGTTCCGGGGGTTTCCTT
13._RUQ_847
__CC_________CCTT
14._RUQ_847
_AA_GG________CC_
15._RUQ_847
__CC_________CCTT
16._RUQ_847
GTAA__AG______CTCC_
17._ICS1
_TT_AG________CT_
18._ICS_1
__TT_________CCCT
19._RUQ_847
AC_GG_AGAGAA_GGGGACAGGGAA
20._MITC-000297
AC_GG_AGAGAA_GGGGACAGGGAA
21._ICS_1_Fld#_73_Plt#_2
AC_GG_AGAGAA_GGGGACAGGGAA
 5758596061626364656667686970
_Input profile
GTAACGTTCTAAGGAAAAAGTTGTGGCT
1._ICS_1
__CG_CTAAGG_AAAGTTGT__
2._ICS_1
__CG_CTAAGG_AAAGTTGT__
3._ICS_1
__CG_CTAAGG_AAAGTTGT__
4._NA
GTAACGTTCTAAGGAAAAAGTTGTGGCT
5._ICS_1
__CG_CTAAGG_AAAGTTGT__
6._ICS_1
__CG_CTAAGG_AAAGTTGT__
7._ICS_1
__CG_CTAAGG_AAAGTTGT__
8._ICS_1
__CG_CTAAGG_AAAGTTGT__
9._NA
GTAACGTTCTAAGGAAAAAGTTGTGGCT
10._NA
GTAACGTTCTAAGGAAAAAGTTGTGGCT
11._NA
GTAACGTTCTAAGGAAAAAGTTGTGGCT
12._NA
GTAACGTTCTAAGGAAAAAGTTGTGGCT
13._RUQ_847
__CG_CTAAGG_AAAGTTGT__
14._RUQ_847
__CGTT_AA_AAAAAG____
15._RUQ_847
__CG_CTAAGG_AAAGTTGT__
16._RUQ_847
GT-CGTTCTAA_AAAAAGTTGTGG_
17._ICS1
__CGCT_AC_AGCCAG____
18._ICS_1
__CC_CTAAGG_ACAAGGGG__
19._RUQ_847
ACAACGAAAGAAGGAAAAAGAAACGG_
20._MITC-000297
ACAACGAAAGAAGGAAAAAGAAACGG_
21._ICS_1_Fld#_73_Plt#_2
ACAACGAAAGAAGGAAAAAGAAACGG_
 7172737475767778798081828384
_Input profile
CCGGTTACGGCCAAAACCGGCTAAACTT
1._ICS_1
_GGTT_____CCGG___TT
2._ICS_1
_GGTT_____CCGG___TT
3._ICS_1
_GGTT_____CCGG___TT
4._NA
CCGGTTACGGCCAAAACCGGCTAAACTT
5._ICS_1
_GGTT_____CCGG___TT
6._ICS_1
_GGTT_____CCGG___TT
7._ICS_1
_GGTT_____CCGG___TT
8._ICS_1
_GGTT_____CCGG___TT
9._NA
CCGGTTACGGCCAAAACCGGCTAAACTT
10._NA
CCGGTTACGGCCAAAACCGGCTAAACTT
11._NA
CCGGTTACGGCCAAAACCGGCTAAACTT
12._NA
CCGGTTACGGCCAAAACCGGCTAAACTT
13._RUQ_847
_GGTT_____CCGG___TT
14._RUQ_847
CC________CC____
15._RUQ_847
_GGTT_____CCGG___CT
16._RUQ_847
________CCGG__ACTT
17._ICS1
CC________CG____
18._ICS_1
_AATT_____AAGG___TT
19._RUQ_847
__AAACGGCCAA_CCCCAGAAACAA
20._MITC-000297
__AAACGGCCAA_CCCCAGAAACAA
21._ICS_1_Fld#_73_Plt#_2
__AAACGGCCAA_CCCCAGAAACAA
 85868788899091929394    
_Input profile
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
1._ICS_1
TTTT_AG_CTTTTT__X_XX_XX_XX_X
2._ICS_1
TTTT_AG_CTTTTT__X_XX_XX_XX_X
3._ICS_1
TTTT___CTTTTT__X_XX_XX_XX_X
4._NA
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
5._ICS_1
TTTT_AG_CTTTTT__X_XX_XX_XX_X
6._ICS_1
TTTT_AG_CTTTTT__X_XX_XX_XX_X
7._ICS_1
TTTT_AG_CTTTTT__X_XX_XX_XX_X
8._ICS_1
TTTT_AG_CTTTTT__X_XX_XX_XX_X
9._NA
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
10._NA
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
11._NA
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
12._NA
TTTTTTAGCTCTTTTTAAGGX_XX_XX_XX_X
13._RUQ_847
TTTT_AG_CTTTTT__X_XX_XX_XX_X
14._RUQ_847
TT_________X_XX_XX_XX_X
15._RUQ_847
TTCT_AG_CTTTTT__X_XX_XX_XX_X
16._RUQ_847
___AG-CTTT___X_XX_XX_XX_X
17._ICS1
CT_________X_XX_XX_XX_X
18._ICS_1
TTCC_AG_CCTTTT__X_XX_XX_XX_X
19._RUQ_847
AA_AA__AGAAAATTGGX_XX_XX_XX_X
20._MITC-000297
AA_AA__AGAAAATTGGX_XX_XX_XX_X
21._ICS_1_Fld#_73_Plt#_2
AA_AA__AGAAAATTGGX_XX_XX_XX_X

Input profile: ICS_1 NA

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

1._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

2._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

3._ICS_1

identical
37 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

4._ICS_1 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

5._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

6._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

7._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

8._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

9._ICS_1 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

10._ICS_1 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

11._ICS_1 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

12._ICS_1 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

13._ICS_1 RUQ_847

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._ICS_1 RUQ_847

94 %
25 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

15._ICS_1 RUQ_847

94.9 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._ICS_1 RUQ_847

90.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._ICS_1 ICS1

46 %
25 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

18._ICS_1

52.6 %
39 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

19._ICS_1 RUQ_847

53.1 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

20._ICS_1 MITC-000297

53.1 %
80 shared markers

USDA-SHRS, United States of America
 Mars, 2018

21._ICS_1 ICS_1_Fld#_73_Plt#_2

53.1 %
80 shared markers

USDA-TARS, United States of America
Location: Field: 73, Tree: 2
 Mars, 2018

 

 Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240