SNP Profiles of ICS 1   View Data

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 Key

 1234567891011121314
_Input profile
AAAATTACGGAGCCCCTTCTGGCTCCCC
1._ICS_1
AAAATTAC____TTCTGG_CC_
2._ICS_1
AAAATTAC____TTCTGG_CC_
3._ICS_1
AAAATTAC____TTCTGG_CC_
4._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
5._ICS_1
AAAATTAC____TTCTGG_CC_
6._ICS_1
AAAATTAC____TTCTGG_CC_
7._ICS_1
AAAATTAC____TTCTGG_CC_
8._ICS_1
AAAATTAC____TTCTGG_CC_
9._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
10._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
11._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
12._NA
AAAATTACGGAGCCCCTTCTGGCTCCCC
13._RUQ_847
AAAATTAC____TTCTGG_CC_
14._RUQ_847
___AC____TT___CC_
15._RUQ_847
AAAACTAC____TTCTGG_CC_
16._RUQ_847
__TTAA__CT_TT__CTCC_
17._ICS1
___CC____CC___CT_
18._ICS_1
AAACCTCC____CCCCGG_CC_
19._RUQ_847
AAAA_ACGGAG_GGAA_GGAGGGGG
20._MITC-000297
AAAA_ACGGAG_GGAA_GGAGGGGG
21._ICS_1_Fld#_73_Plt#_2
AAAA_ACGGAG_GGAA_GGAGGGGG
 1516171819202122232425262728
_Input profile
ATCCAAAAGGCGGGCTAGTTAGATATCG
1._ICS_1
___AA__GG____ATAT_
2._ICS_1
___AA__GG____ATAT_
3._ICS_1
___AA__GG____ATAT_
4._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
5._ICS_1
___AA__GG____ATAT_
6._ICS_1
___AA__GG____ATAT_
7._ICS_1
___AA__GG____ATAT_
8._ICS_1
___AA__GG____ATAT_
9._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
10._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
11._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
12._NA
ATCCAAAAGGCGGGCTAGTTAGATATCG
13._RUQ_847
___AA__GG____ATAT_
14._RUQ_847
__AG__CG_CT__AG_ATCG
15._RUQ_847
___AA__GG____ATAT_
16._RUQ_847
_____CG____AG_ATCG
17._ICS1
__AG__GG_CT__AG_TTGG
18._ICS_1
___GG__CG____ATAA_
19._RUQ_847
ATCCAGAACC_GGAGAGAAAGATATCG
20._MITC-000297
ATCCAGAACC_GGAGAGAAAGATATCG
21._ICS_1_Fld#_73_Plt#_2
ATCCAGAACC_GGAGAGAAAGATATCG
 2930313233343536373839404142
_Input profile
CGAACTGGAACCAAAGGTGGGTAACTAA
1._ICS_1
CGAA___CC_AGGT__AA__
2._ICS_1
CGAA___CC_AGGT__AA__
3._ICS_1
_AA___CC_AGGT__AA__
4._NA
CGAACTGGAACCAAAGGTGGGTAACTAA
5._ICS_1
CGAA_____AGGT__AA__
6._ICS_1
CGAA___CC_AGGT__AA__
7._ICS_1
CGAA___CC_AGGT__AA__
8._ICS_1
CGAA___CC_AGGT__AA__
9._NA
CGAACTGGAACCAAAGGTGGGTAACTAA
10._NA
CGAACTGGAACCAAAGGTGGGTAACTAA
11._NA
CGAACTGGAACCAAAGGTGGGTAACTAA
12._NA
CGAACTGGAA_AAAGGTGGGTAACTAA
13._RUQ_847
CGAA___CC_AGGT__AG__
14._RUQ_847
CG___AACC____GT_CT_
15._RUQ_847
CGAA___CC_AGGT__AG__
16._RUQ_847
CG___AACCAAAGGT__AACT_
17._ICS1
CG___GGCC____GT_CC_
18._ICS_1
GGAA___CG_AGGT__GG__
19._RUQ_847
CGAAAGCCAACCAAAGACCCACAAAGAA
20._MITC-000297
CGAAAGCCAACCAAAGACCCACAAAGAA
21._ICS_1_Fld#_73_Plt#_2
CGAAAGCCAACCAAAGACCCACAAAGAA
 4344454647484950515253545556
_Input profile
CCGTAACCGGAGAGTTCCGGGGGTTTCC
1._ICS_1
___CC_________CC
2._ICS_1
___CC_________CC
3._ICS_1
___CC_________CC
4._NA
CCGTAACCGGAGAGTTCCGGGGGTTTCC
5._ICS_1
___CC_________CC
6._ICS_1
___CC_________CC
7._ICS_1
___CC_________CC
8._ICS_1
___CC_________CC
9._NA
CCGTAACCGGAGAGTTCCGGGGGTTTCC
10._NA
CCGTAACCGGAGAGTTCCGGGGGTTTCC
11._NA
CCGTAACCGGAGAGTTCCGGGGGTTTCC
12._NA
CCGTAACCGGAGAGTTCCGGGGGTTTCC
13._RUQ_847
___CC_________CC
14._RUQ_847
__AA_GG________CC
15._RUQ_847
___CC_________CC
16._RUQ_847
_GTAA__AG______CTCC
17._ICS1
__TT_AG________CT
18._ICS_1
___TT_________CC
19._RUQ_847
GGAC_GG_AGAGAA_GGGGACAGGG
20._MITC-000297
GGAC_GG_AGAGAA_GGGGACAGGG
21._ICS_1_Fld#_73_Plt#_2
GGAC_GG_AGAGAA_GGGGACAGGG
 5758596061626364656667686970
_Input profile
TTGTAACGTTCTAAGGAAAAAGTTGTGG
1._ICS_1
TT__CG_CTAAGG_AAAGTTGT_
2._ICS_1
TT__CG_CTAAGG_AAAGTTGT_
3._ICS_1
TT__CG_CTAAGG_AAAGTTGT_
4._NA
TTGTAACGTTCTAAGGAAAAAGTTGTGG
5._ICS_1
TT__CG_CTAAGG_AAAGTTGT_
6._ICS_1
TT__CG_CTAAGG_AAAGTTGT_
7._ICS_1
TT__CG_CTAAGG_AAAGTTGT_
8._ICS_1
TT__CG_CTAAGG_AAAGTTGT_
9._NA
TTGTAACGTTCTAAGGAAAAAGTTGTGG
10._NA
TTGTAACGTTCTAAGGAAAAAGTTGTGG
11._NA
TTGTAACGTTCTAAGGAAAAAGTTGTGG
12._NA
TTGTAACGTTCTAAGGAAAAAGTTGTGG
13._RUQ_847
TT__CG_CTAAGG_AAAGTTGT_
14._RUQ_847
___CGTT_AA_AAAAAG___
15._RUQ_847
TT__CG_CTAAGG_AAAGTTGT_
16._RUQ_847
_GT-CGTTCTAA_AAAAAGTTGTGG
17._ICS1
___CGCT_AC_AGCCAG___
18._ICS_1
CT__CC_CTAAGG_ACAAGGGG_
19._RUQ_847
AAACAACGAAAGAAGGAAAAAGAAACGG
20._MITC-000297
AAACAACGAAAGAAGGAAAAAGAAACGG
21._ICS_1_Fld#_73_Plt#_2
AAACAACGAAAGAAGGAAAAAGAAACGG
 7172737475767778798081828384
_Input profile
CTCCGGTTACGGCCAAAACCGGCTAAAC
1._ICS_1
__GGTT_____CCGG___
2._ICS_1
__GGTT_____CCGG___
3._ICS_1
__GGTT_____CCGG___
4._NA
CTCCGGTTACGGCCAAAACCGGCTAAAC
5._ICS_1
__GGTT_____CCGG___
6._ICS_1
__GGTT_____CCGG___
7._ICS_1
__GGTT_____CCGG___
8._ICS_1
__GGTT_____CCGG___
9._NA
CTCCGGTTACGGCCAAAACCGGCTAAAC
10._NA
CTCCGGTTACGGCCAAAACCGGCTAAAC
11._NA
CTCCGGTTACGGCCAAAACCGGCTAAAC
12._NA
CTCCGGTTACGGCCAAAACCGGCTAAAC
13._RUQ_847
__GGTT_____CCGG___
14._RUQ_847
_CC________CC___
15._RUQ_847
__GGTT_____CCGG___
16._RUQ_847
_________CCGG__AC
17._ICS1
_CC________CG___
18._ICS_1
__AATT_____AAGG___
19._RUQ_847
___AAACGGCCAA_CCCCAGAAAC
20._MITC-000297
___AAACGGCCAA_CCCCAGAAAC
21._ICS_1_Fld#_73_Plt#_2
___AAACGGCCAA_CCCCAGAAAC
 8586878889909192939495   
_Input profile
TTTTTTTTAGCTCTTTTTAAGGX_XX_XX_X
1._ICS_1
TTTTTT_AG_CTTTTT__X_XX_XX_X
2._ICS_1
TTTTTT_AG_CTTTTT__X_XX_XX_X
3._ICS_1
TTTTTT___CTTTTT__X_XX_XX_X
4._NA
TTTTTTTTAGCTCTTTTTAAGGX_XX_XX_X
5._ICS_1
TTTTTT_AG_CTTTTT__X_XX_XX_X
6._ICS_1
TTTTTT_AG_CTTTTT__X_XX_XX_X
7._ICS_1
TTTTTT_AG_CTTTTT__X_XX_XX_X
8._ICS_1
TTTTTT_AG_CTTTTT__X_XX_XX_X
9._NA
TTTTTTTTAGCTCTTTTTAAGGX_XX_XX_X
10._NA
TTTTTTTTAGCTCTTTTTAAGGX_XX_XX_X
11._NA
TTTTTTTTAGCTCTTTTTAAGGX_XX_XX_X
12._NA
TTTTTTTTAGCTCTTTTTAAGGX_XX_XX_X
13._RUQ_847
TTTTTT_AG_CTTTTT__X_XX_XX_X
14._RUQ_847
_TT_________X_XX_XX_X
15._RUQ_847
CTTTCT_AG_CTTTTT__X_XX_XX_X
16._RUQ_847
TT___AG-CTTT___X_XX_XX_X
17._ICS1
_CT_________X_XX_XX_X
18._ICS_1
TTTTCC_AG_CCTTTT__X_XX_XX_X
19._RUQ_847
AAAA_AA__AGAAAATTGGX_XX_XX_X
20._MITC-000297
AAAA_AA__AGAAAATTGGX_XX_XX_X
21._ICS_1_Fld#_73_Plt#_2
AAAA_AA__AGAAAATTGGX_XX_XX_X

Input profile: ICS_1 NA

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

1._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

2._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 5
 Dapeng Zhang, 2016

3._ICS_1

identical
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block4
 Dapeng Zhang, 2016

4._ICS_1 NA

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

5._ICS_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 7
 Dapeng Zhang, 2016

6._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 6
 Dapeng Zhang, 2016

7._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 8
 Dapeng Zhang, 2016

8._ICS_1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8903 3
 Dapeng Zhang, 2016

9._ICS_1 NA

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

10._ICS_1 NA

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

11._ICS_1 NA

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

12._ICS_1 NA

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

13._ICS_1 RUQ_847

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

14._ICS_1 RUQ_847

94.2 %
26 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

15._ICS_1 RUQ_847

95 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._ICS_1 RUQ_847

90.7 %
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._ICS_1 ICS1

48.1 %
26 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

18._ICS_1

52.5 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

19._ICS_1 RUQ_847

53.7 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

20._ICS_1 MITC-000297

53.7 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

21._ICS_1 ICS_1_Fld#_73_Plt#_2

53.7 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 73, Tree: 2
 Mars, 2018

 

 Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240