SNP Profiles of EET-58   View Data

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 Key

 1234567891011121314
_Input profile
AAAACTCCAAAACTCTCCCTAGCTCTCT
1._GC-08-287-8-59
AAAACTCCAAAACTCTCCCTAGCTCTCT
2._GC-08-287-8-59
AAAACTCCAAAACTCTCCCTAGCTCTCT
3._GC-08-287-8-59
AAAACTCCAAAACTCTCCCTAGCTCTCT
4._GC-08-287-8-59
AAAACTCCAAAACTCTCCCTAGCTCTCT
5._GC-08-287-8-59
AAAACTCCAAAACTCTCCCTAGCTCTCT
6._GC-08-287-8-59
AAAACTCCAAAACTCTCCCTAGCTCTCT
7._GC-08-287-8-59
AAAACTCCAAAACTCTCCCTAGCTCTCT
8._EET_58_[ECU]
AAAACTCC____CCCTAG_CT_
9._EET_58_[ECU]
AAAACTCC____CCCTAG_CT_
10._EET_58_[ECU]
AAAACTCC____CCCTAG_CT_
11._EET_58_[ECU]
AAAACTCC____CCCTAG_CT_
12._EET_58_[ECU]
AAAACTCC____CCCTAG_CT_
13._EET_58_[ECU]
AAAACTCC____CCCTAG_CT_
14._EET_58_[ECU]
AAAACTCC____CCCTAG_CT_
15._EET_58_[ECU]
AAAACTCC____CCCTAG_CT_
16._EET_58_[ECU]
AAAACTCC____CCCTAG_CT_
17._GC-08-287-8-59
AAAACTCCAAAGCTCTCCCTAGCTCTCT
18._EET_58_[ECU]
ATACCTCC____CCCTAG_CT_
19._RUQ_383
ATACCTCC____CCCTGG_CT_
 1516171819202122232425262728
_Input profile
ATACAAAGCGCGGGCCAGCTGGATATCC
1._GC-08-287-8-59
ATACAAAGCGCGGGCCAGCTGGATATCC
2._GC-08-287-8-59
ATACAAAGCGCGGGCCAGCTGGATATCC
3._GC-08-287-8-59
ATACAAAGCGCGGGCCAGCTGGATATCC
4._GC-08-287-8-59
ATACAAAGCGCGGGCCAGCTGGATATCC
5._GC-08-287-8-59
ATACAAAGCGCGGGCCAGCTGGATATCC
6._GC-08-287-8-59
ATACAAAGCGCGGGCCAGCTGGATATCC
7._GC-08-287-8-59
ATACAAAGCGCGGGCCAGCTGGATATCC
8._EET_58_[ECU]
___AG__GG____ATAT_
9._EET_58_[ECU]
___AG__GG____ATAT_
10._EET_58_[ECU]
___AG__GG____ATAT_
11._EET_58_[ECU]
___AG__GG____ATAT_
12._EET_58_[ECU]
___AG__GG____ATAT_
13._EET_58_[ECU]
___AG__GG____ATAT_
14._EET_58_[ECU]
___AG__GG____ATAT_
15._EET_58_[ECU]
___AG__GG____ATAT_
16._EET_58_[ECU]
___AG__GG____ATAT_
17._GC-08-287-8-59
ATACAAAGCGCGGGCCAGCTGGATATCC
18._EET_58_[ECU]
___AG__GG____ATAT_
19._RUQ_383
___AG__GG____ATAT_
 2930313233343536373839404142
_Input profile
GGATTTTTGGCGACAGGTGGGTAGCTAG
1._GC-08-287-8-59
GGATTTTTGGCGACAGGTGGGTAGCTAG
2._GC-08-287-8-59
GGATTTTTGGCGACAGGTGGGTAGCTAG
3._GC-08-287-8-59
GGATTTTTGGCGACAGGTGGGTAGCTAG
4._GC-08-287-8-59
GGATTTTTGGCGACAGGTGGGTAGCTAG
5._GC-08-287-8-59
GGATTTTTGGCGACAGGTGGGTAGCTAG
6._GC-08-287-8-59
GGATTTTTGGCGACAGGTGGGTAGCTAG
7._GC-08-287-8-59
GGATTTTTGGCGACAGGTGGGTAGCTAG
8._EET_58_[ECU]
GGAT___CG_AGGT__AG__
9._EET_58_[ECU]
GGAT___CG_AGGT__AG__
10._EET_58_[ECU]
GGAT___CG_AGGT__AG__
11._EET_58_[ECU]
GGAT___CG_AGGT__AG__
12._EET_58_[ECU]
GGAT___CG_AGGT__AG__
13._EET_58_[ECU]
GGAT___CG_AGGT__AG__
14._EET_58_[ECU]
GGAT___CG_AGGT__AG__
15._EET_58_[ECU]
GGAT___CG_AGGT__AG__
16._EET_58_[ECU]
GGAT___CG_AGGT__AG__
17._GC-08-287-8-59
GGATTTTTGGCGACAGGTGGGTAGCTAG
18._EET_58_[ECU]
GGAT___CG_AGGT__AG__
19._RUQ_383
GGAT___CG_AGGT__AG__
 4344454647484950515253545556
_Input profile
CGGTATCTAAGGAGCTACGGAGGTTTCT
1._GC-08-287-8-59
CGGTATCTAAGGAGCTACGGAGGTTTCT
2._GC-08-287-8-59
CGGTATCTAAGGAGCTACGGAGGTTTCT
3._GC-08-287-8-59
CGGTATCTAAGGAGCTACGGAGGTTTCT
4._GC-08-287-8-59
CGGTATCTAAGGAGCTACGGAGGTTTCT
5._GC-08-287-8-59
CGGTATCTAAGGAGCTACGGAGGTTTCT
6._GC-08-287-8-59
CGGTATCTAAGGAGCTACGGAGGTTTCT
7._GC-08-287-8-59
CGGTATCTAAGGAGCTACGGAGGT_CT
8._EET_58_[ECU]
___CT_________CT
9._EET_58_[ECU]
___CT_________CT
10._EET_58_[ECU]
___CT_________CT
11._EET_58_[ECU]
___CT_________CT
12._EET_58_[ECU]
___CT_________CT
13._EET_58_[ECU]
___CT_________CT
14._EET_58_[ECU]
___CT_________CT
15._EET_58_[ECU]
___CT_________CT
16._EET_58_[ECU]
___CT_________CT
17._GC-08-287-8-59
CGGTATCTAAGGAGCTACGGAGGTTTCT
18._EET_58_[ECU]
___CT_________CT
19._RUQ_383
___CT_________CT
 5758596061626364656667686970
_Input profile
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
1._GC-08-287-8-59
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
2._GC-08-287-8-59
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
3._GC-08-287-8-59
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
4._GC-08-287-8-59
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
5._GC-08-287-8-59
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
6._GC-08-287-8-59
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
7._GC-08-287-8-59
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
8._EET_58_[ECU]
CC__CC_CTCCCG_CCAGGGGG_
9._EET_58_[ECU]
CC__CC_CTCCCG_CCAGGGGG_
10._EET_58_[ECU]
CC__CC_CTCCCG_CCAGGGGG_
11._EET_58_[ECU]
CC__CC_CTCCCG_CCAGGGGG_
12._EET_58_[ECU]
CC__CC_CTCCCG_CCAGGGGG_
13._EET_58_[ECU]
CC__CC_CTCCCG_CCAGGGGG_
14._EET_58_[ECU]
CC__CC_CTCCCG_CCAGGGGG_
15._EET_58_[ECU]
CC__CC_CTCCCG_CCAGGGGG_
16._EET_58_[ECU]
CC__CC_CTCCCG_CCAGGGGG_
17._GC-08-287-8-59
CCGTAGCCCTCTCCCGGGCCAGGGGGAG
18._EET_58_[ECU]
CT__CG_CTCCCG_CCAAGTGG_
19._RUQ_383
CT__CG_CTCCCG_CCAAGTGG_
 7172737475767778798081828384
_Input profile
CTCCAGCTCCGGACACAAACCGCCAAAC
1._GC-08-287-8-59
CTCCAGCTCCGGACACAAACCGCCAAAC
2._GC-08-287-8-59
CTCCAGCTCCGGACACAAACCGCCAAAC
3._GC-08-287-8-59
CTCCAGCTCCGGACACAAACCGCCAAAC
4._GC-08-287-8-59
CTCCAGCTCCGGACACAAACCGCCAAAC
5._GC-08-287-8-59
CTCCAGCTCCGGACACAAACCGCCAAAC
6._GC-08-287-8-59
CTCCAGCTCCGGACACAAACCGCCAAAC
7._GC-08-287-8-59
CTCCAGCTCCGGACACAAACCGCCAAAC
8._EET_58_[ECU]
__AGCT_____ACCG___
9._EET_58_[ECU]
__AGCT_____ACCG___
10._EET_58_[ECU]
__AGCT_____ACCG___
11._EET_58_[ECU]
__AGCT_____ACCG___
12._EET_58_[ECU]
__AGCT_____ACCG___
13._EET_58_[ECU]
__AGCT_____ACCG___
14._EET_58_[ECU]
__AGCT_____ACCG___
15._EET_58_[ECU]
__AGCT_____ACCG___
16._EET_58_[ECU]
__AGCT_____ACCG___
17._GC-08-287-8-59
CTCCAGCTCCGGACACAAACCGCCAAAC
18._EET_58_[ECU]
__AGCT_____ACCG___
19._RUQ_383
__AGCT_____ACCG___
 8586878889909192939495   
_Input profile
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
1._GC-08-287-8-59
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
2._GC-08-287-8-59
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
3._GC-08-287-8-59
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
4._GC-08-287-8-59
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
5._GC-08-287-8-59
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
6._GC-08-287-8-59
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
7._GC-08-287-8-59
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
8._EET_58_[ECU]
TTTTCT_GG_CCGTCT__X_XX_XX_X
9._EET_58_[ECU]
TTTTCT_GG_CCGTCT__X_XX_XX_X
10._EET_58_[ECU]
TTTTCT_GG_CCGTCT__X_XX_XX_X
11._EET_58_[ECU]
TTTTCT_GG_CCGTCT__X_XX_XX_X
12._EET_58_[ECU]
TTTTCT_GG_CCGTCT__X_XX_XX_X
13._EET_58_[ECU]
TTTTCT_GG_CCGTCT__X_XX_XX_X
14._EET_58_[ECU]
TTTTCT_GG_CCGTCT__X_XX_XX_X
15._EET_58_[ECU]
TTTTCT_GG_CCGTCT__X_XX_XX_X
16._EET_58_[ECU]
TTTTCT_GG_CCGTCT__X_XX_XX_X
17._GC-08-287-8-59
TTTTCTTTGGCCCCGTCTAAGGX_XX_XX_X
18._EET_58_[ECU]
TTTTCT_AG_CCGTCT__X_XX_XX_X
19._RUQ_383
CTTTCT_AG_CCGTCT__X_XX_XX_X

Input profile: EET_58_[ECU] GC-08-287-8-59

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

1._EET_58_[ECU] GC-08-287-8-59

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

2._EET_58_[ECU] GC-08-287-8-59

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

3._EET_58_[ECU] GC-08-287-8-59

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._EET_58_[ECU] GC-08-287-8-59

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

5._EET_58_[ECU] GC-08-287-8-59

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._EET_58_[ECU] GC-08-287-8-59

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._EET_58_[ECU] GC-08-287-8-59

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

8._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 10
 Dapeng Zhang, 2016

9._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 3
 Dapeng Zhang, 2016

11._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 4
 Dapeng Zhang, 2016

12._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 5
 Dapeng Zhang, 2016

13._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 6
 Dapeng Zhang, 2016

14._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 7
 Dapeng Zhang, 2016

15._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 8
 Dapeng Zhang, 2016

16._EET_58_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8859 9
 Dapeng Zhang, 2016

17._EET_58_[ECU] GC-08-287-8-59

99.5 %
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

18._EET_58_[ECU]

91.3 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F465 T10
 Dapeng Zhang, 2016

19._EET_58_[ECU] RUQ_383

88.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240