SNP Profiles of GU-133C   View Data

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 Key

 1234567891011121314
_Input profile
AAACGGGGCCCCCCCCGGTTCCTTAACC
1._GC-01-116-6-13
AAACGGGGCCCCCCCCGGTTCCTTAACC
2._GC-01-116-6-13
AAACGGGGCCCCCCCCGGTTCCTTAACC
3._GC-01-116-6-13
AAACGGGGCCCCCCCCGGTTCCTTAACC
4._GC-08-164-4-07
AAACGGGGCCCCCCCCGGTTCCTTAACC
5._GC-08-164-4-07
AAACGGGGCCCCCCCCGGTTCCTTAACC
6._GC-01-116-6-13
AAACGGGGCCCCCCCCGGTTCCTTAACC
7._GC-08-164-4-07
AAACGGGG_CCCCCCGGTTCCTTAACC
8._GC-08-164-4-07
AAACGGGGCCCCCCCCGGTTCCTTAACC
9._GC-08-164-4-07
AAACGGGGCCCCCCCCGGTTCCTTAACC
10._GC-01-116-6-13
AAACGGGGCCCCCCCCGGTT_TTAACC
11._RUQ_190
_AC__CC_CC__TTCC___
12._GU_133_/C
AAAC____CCCCGG_CC___
13._GU_133_/C
AAAC____CCCCGG_CC___
14._GU_133_/C
AAAC____CCCCGG_CC___
15._GU_133_/C
AAAC____CCCCGG_CC___
16._GU_133_/C
AAAC____CCCCGG_CC___
17._GU_133_/C
AAAC____CCCCGG_CC___
18._GU_133_/C
AAAC____CCCCGG_CC___
19._GU_133_/C
AAAC____CCCCGG_CC___
20._GU_133_/C
AAAC____CCCCGG_CC___
21._GU_133_/C
AAAC____CCCCGG_CC___
22._GU_133_/C
AAAC____CCCCGG_____
23._RUQ_190
AAAC____CCCCGG_CC___
24._RUQ_190
_AC__CC_________
25._RUQ_190
_AC____CC___CC___
26._GC-01-116-6-13
AAACGGGG_GGGG_GGAAGGAATTCC
27._MITC-000670
AAACGGGG_GGGG_GGAAGGAATTCC
 1516171819202122232425262728
_Input profile
GGGGCCGGTTAATTGGATAACCGGAATT
1._GC-01-116-6-13
GGGGCCGGTTAATTGGATAACCGGAATT
2._GC-01-116-6-13
GGGGCCGGTTAATTGGATAACCGGAATT
3._GC-01-116-6-13
GGGGCCGGTTAATTGGATAACCGGAATT
4._GC-08-164-4-07
GGGGCCGGTTAATTGGATAACCGGAATT
5._GC-08-164-4-07
GGGGCCGGTTAATTGGATAACCGGAATT
6._GC-01-116-6-13
GGGGCCGGTTAATTGGATAACCGGAATT
7._GC-08-164-4-07
GGGGCCGGTTAATTGGATAACCGGAATT
8._GC-08-164-4-07
GGGGCCGGTTAATTGGATAACCGGAATT
9._GC-08-164-4-07
GGGGCCGGTTAATTGGATAACCGGAATT
10._GC-01-116-6-13
GGGGCCGG_AATTGGATAACCGGAATT
11._RUQ_190
__CC____GG_AACCGG__
12._GU_133_/C
GG__GG____ATAA_GGAA_
13._GU_133_/C
GG__GG____ATAA_GGAA_
14._GU_133_/C
GG__GG____ATAA_GGAA_
15._GU_133_/C
GG__GG____ATAA_GGAA_
16._GU_133_/C
GG__GG____ATAA_GGAA_
17._GU_133_/C
GG__GG____ATAA_GGAA_
18._GU_133_/C
GG__GG____ATAA_GGAA_
19._GU_133_/C
GG__GG____ATAA_GGAA_
20._GU_133_/C
GG__GG____ATAA_GGAA_
21._GU_133_/C
GG__GG____ATAA_GGAA_
22._GU_133_/C
GG__GG____ATAA_GGAA_
23._RUQ_190
GG__GG____ATAA_GGAA_
24._RUQ_190
GGCC_________GG__
25._RUQ_190
__GG_TT__GG_AACCCC__
26._GC-01-116-6-13
GGCC_GGAAGGAAGGATAAGGCCAAAA
27._MITC-000670
GGCC_GGAAGGAAGGATAAGGCCAAAA
 2930313233343536373839404142
_Input profile
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
1._GC-01-116-6-13
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
2._GC-01-116-6-13
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
3._GC-01-116-6-13
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
4._GC-08-164-4-07
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
5._GC-08-164-4-07
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
6._GC-01-116-6-13
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
7._GC-08-164-4-07
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
8._GC-08-164-4-07
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
9._GC-08-164-4-07
TTGGCCCCGGTTGGGGGGCCGGCCGGTT
10._GC-01-116-6-13
TTGGCCCCGGTT__GGCCGGCCGGTT
11._RUQ_190
_GGCCCCGGTT__GGCC__GGTT
12._GU_133_/C
__CC_GGTT__GG_____
13._GU_133_/C
__CC_GGTT__GG_____
14._GU_133_/C
__CC_GGTT__GG_____
15._GU_133_/C
__CC_GGTT__GG_____
16._GU_133_/C
__CC_GGTT__GG_____
17._GU_133_/C
__CC_GGTT__GG_____
18._GU_133_/C
__CC_GGTT__GG_____
19._GU_133_/C
__CC_GGTT__GG_____
20._GU_133_/C
__CC_GGTT__GG_____
21._GU_133_/C
__CC_GGTT__GG_____
22._GU_133_/C
__CC_GGTT__GG_____
23._RUQ_190
__CC_GGGT__GG_____
24._RUQ_190
__CC_GG____CC____
25._RUQ_190
_GGCC____GG_CC___TT
26._GC-01-116-6-13
AAGGCCCCGGAA_CCGGGGGGGGCC_
27._MITC-000670
AAGGCCCCGGAACCCCGGGGGGGGCC_
 4344454647484950515253545556
_Input profile
TTAAGGAACCCCGGGGTTTTTTCCTTGG
1._GC-01-116-6-13
TTAAGGAACCCCGGGGTTTTTTCCTTGG
2._GC-01-116-6-13
TTAAGGAACCCCGGGGTTTTTTCCTTGG
3._GC-01-116-6-13
TTAAGGAACCCCGGGGTTTTTTCCTTGG
4._GC-08-164-4-07
TTAAGGAACCCCGGGGTTTTTTCCTTGG
5._GC-08-164-4-07
TTAAGGAACCCCGGGGTTTTTTCCTTGG
6._GC-01-116-6-13
TTAAGGAACCCCGGGGTTTTTTCCTTGG
7._GC-08-164-4-07
TTAAGGAACCCCGGGGTTTTTTCCTTGG
8._GC-08-164-4-07
TTAAGGAACCCCGGGGTTTTTTCCTTGG
9._GC-08-164-4-07
TTAAGGAACCCCGGGGTTTTTTCCTTGG
10._GC-01-116-6-13
TTAAGGAACCCC_GGTTTTTTCCTTGG
11._RUQ_190
__GG______TTTT_TT-
12._GU_133_/C
TT_________TTCC__
13._GU_133_/C
TT_________TTCC__
14._GU_133_/C
TT_________TTCC__
15._GU_133_/C
TT_________TTCC__
16._GU_133_/C
TT_________TTCC__
17._GU_133_/C
TT_________TTCC__
18._GU_133_/C
TT_________TTCC__
19._GU_133_/C
TT_________TTCC__
20._GU_133_/C
TT_________TTCC__
21._GU_133_/C
TT_________TTCC__
22._GU_133_/C
TT_________TTCC__
23._RUQ_190
TT_________TTCC__
24._RUQ_190
__GG__________GG
25._RUQ_190
_AA________TT___
26._GC-01-116-6-13
AA_GGAAGG_GGGGAAAAAAGGAAGG
27._MITC-000670
AA_GGAAGG_GGGGAAAAAAGGAAGG
 5758596061626364656667686970
_Input profile
CCCCCCAAGGGGAAGGGGGGAACCCCGG
1._GC-01-116-6-13
CCCCCCAAGGGGAAGGGGGGAACCCCGG
2._GC-01-116-6-13
CCCCCCAAGGGGAAGGGGGGAACCCCGG
3._GC-01-116-6-13
CCCCCCAAGGGGAAGGGGGGAACCCCGG
4._GC-08-164-4-07
CCCCCCAAGGGGAAGGGGGGAACCCCGG
5._GC-08-164-4-07
CCCCCCAAGGGGAAGGGGGGAACCCCGG
6._GC-01-116-6-13
CCCCCCAAGGGGAA_GGGGAACCCCGG
7._GC-08-164-4-07
CCCCCCAAGGGGAAGGGGGGAACCCCGG
8._GC-08-164-4-07
CCCCCC_GGGGAAGGGGGGAACCCCGG
9._GC-08-164-4-07
CCCCCCAAGGGGAAGGGGGGAACCCCGG
10._GC-01-116-6-13
CCCCCCAAGGGGAA_GGGGAACCCCGG
11._RUQ_190
CCCCCCAA_GGAAGGGGGGAA___
12._GU_133_/C
CC_CCAAGG_AAGGGGGG___GG
13._GU_133_/C
CC_CCAAGG_AAGGGGGG___GG
14._GU_133_/C
CC_CCAAGG_AAGGGGGG___GG
15._GU_133_/C
CC_CCAAGG_AAGGGGGG___GG
16._GU_133_/C
CC_CCAAGG_AAGGGGGG___GG
17._GU_133_/C
CC_CCAAGG_AAGGGGGG___GG
18._GU_133_/C
CC_CCAAGG_AAGGGGGG___GG
19._GU_133_/C
CC_CCAAGG_AA_GGGG___GG
20._GU_133_/C
CC_CC_GG_AAGGGGGG___GG
21._GU_133_/C
CC_CCAAGG_AAGGGGGG___GG
22._GU_133_/C
CC_CCAAGG_AA_GGGG___GG
23._RUQ_190
CC_CCAAGG_AAGGGGGG___AA
24._RUQ_190
______AAGG_GGAA__AA
25._RUQ_190
GGCC_AA_GGAAGG____CC_
26._GC-01-116-6-13
GGGGGGAAGGGGAAGGCCCCAA___
27._MITC-000670
GGGGGGAAGGGGAAGGCCCCAA___
 7172737475767778798081828384
_Input profile
CCACGGCCCCGGAACGCCTTAACCCCCC
1._GC-01-116-6-13
CCACGGCCCCGGAACGCCTTAACCCCCC
2._GC-01-116-6-13
CCACGGCCCCGGAACGCCTTAACCCCCC
3._GC-01-116-6-13
CCACGGCCCCGGAACGCCTTAACCCCCC
4._GC-08-164-4-07
CCACGGCCCCGGAACGCCTTAACCCCCC
5._GC-08-164-4-07
CCACGGCCCCGGAACGCCTTAACCCCCC
6._GC-01-116-6-13
CCACGGCCCCGGAACGCCTTAACCCCCC
7._GC-08-164-4-07
CCACGGCCCCGGAACGCCTTAACCCCCC
8._GC-08-164-4-07
CCACGGCCCCGGAACGCCTTAACCCCCC
9._GC-08-164-4-07
CCACGGCCCCGGAACGCCTTAACCCCCC
10._GC-01-116-6-13
CCACGGCCCCGGAACGCCTTAACCCCCC
11._RUQ_190
______AACG__AACC__
12._GU_133_/C
CC_____AACG___CCCCCC
13._GU_133_/C
CC_____AACG___CCCCCC
14._GU_133_/C
CC_____AACG___CCCCCC
15._GU_133_/C
CC_____AACG___CCCCCC
16._GU_133_/C
CC_____AACG___CCCCCC
17._GU_133_/C
CC_____AACG___CCCCCC
18._GU_133_/C
CC_____AACG___CCCCCC
19._GU_133_/C
CC_____AACG___CCCCCC
20._GU_133_/C
CC_____AACG___CCCCCC
21._GU_133_/C
CC_____AACG___CCCCCC
22._GU_133_/C
CC_____AACG___CCCCCC
23._RUQ_190
CC_____AACG___CCCCCC
24._RUQ_190
______AACG__AA__CC
25._RUQ_190
_______CG____CC_
26._GC-01-116-6-13
GGACGGCCCC_AACGGGTTAAGGGG_
27._MITC-000670
GGACGGCCCC_AACGGGTTAAGGGG_
 8586878889909192      
_Input profile
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
1._GC-01-116-6-13
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
2._GC-01-116-6-13
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
3._GC-01-116-6-13
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
4._GC-08-164-4-07
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
5._GC-08-164-4-07
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
6._GC-01-116-6-13
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
7._GC-08-164-4-07
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
8._GC-08-164-4-07
CCGGCCCCTTTTAAGGX_XX_XX_XX_XX_XX_X
9._GC-08-164-4-07
CCGGCCCC_TTAAGGX_XX_XX_XX_XX_XX_X
10._GC-01-116-6-13
CCGGCCCC__AAGGX_XX_XX_XX_XX_XX_X
11._RUQ_190
_GGCCCCTT___X_XX_XX_XX_XX_XX_X
12._GU_133_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
13._GU_133_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
14._GU_133_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
15._GU_133_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
16._GU_133_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
17._GU_133_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
18._GU_133_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
19._GU_133_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
20._GU_133_/C
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
21._GU_133_/C
_GG_CC_TT__X_XX_XX_XX_XX_XX_X
22._GU_133_/C
_GG_CC____X_XX_XX_XX_XX_XX_X
23._RUQ_190
_GG_CCTTTT__X_XX_XX_XX_XX_XX_X
24._RUQ_190
__CC_TT___X_XX_XX_XX_XX_XX_X
25._RUQ_190
________X_XX_XX_XX_XX_XX_X
26._GC-01-116-6-13
GG__GGAAAATTGGX_XX_XX_XX_XX_XX_X
27._MITC-000670
GG__GGAAAATTGGX_XX_XX_XX_XX_XX_X

Input profile: GU_133_/C GC-08-164-4-07

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

1._GU_133_/C GC-01-116-6-13

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

2._GU_133_/C GC-01-116-6-13

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

3._GU_133_/C GC-01-116-6-13

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._GU_133_/C GC-08-164-4-07

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._GU_133_/C GC-08-164-4-07

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

6._GU_133_/C GC-01-116-6-13

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

7._GU_133_/C GC-08-164-4-07

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._GU_133_/C GC-08-164-4-07

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._GU_133_/C GC-08-164-4-07

identical
91 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

10._GU_133_/C GC-01-116-6-13

identical
84 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

11._GU_133_/C RUQ_190

identical
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

12._GU_133_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

13._GU_133_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

14._GU_133_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

15._GU_133_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

16._GU_133_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

17._GU_133_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

18._GU_133_/C

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

19._GU_133_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

20._GU_133_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

21._GU_133_/C

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

22._GU_133_/C

identical
34 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

23._GU_133_/C RUQ_190

96.1 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

24._GU_133_/C RUQ_190

90.5 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

25._GU_133_/C RUQ_190

88 %
25 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

26._GU_133_/C GC-01-116-6-13

48.7 %
78 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

27._GU_133_/C MITC-000670

48.1 %
79 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP591 3TcSNP42 4TcSNP418 5TcSNP702
6TcSNP1096 7TcSNP1060 8TcSNP1165 9TcSNP429 10TcSNP75
11TcSNP891 12TcSNP122 13TcSNP316 14TcSNP521 15TcSNP1062
16TcSNP836 17TcSNP878 18TcSNP929 19TcSNP413 20TcSNP653
21TcSNP1149 22TcSNP174 23TcSNP32 24TcSNP372 25TcSNP448
26TcSNP872 27TcSNP953 28TcSNP1034 29TcSNP1175 30TcSNP1111
31TcSNP577 32TcSNP90 33TcSNP998 34TcSNP150 35TcSNP28
36TcSNP751 37TcSNP1484 38TcSNP602 39TcSNP561 40TcSNP894
41TcSNP1063 42TcSNP1126 43TcSNP1270 44TcSNP606 45TcSNP329
46TcSNP689 47TcSNP944 48TcSNP1242 49TcSNP1383 50TcSNP547
51TcSNP776 52TcSNP1309 53TcSNP151 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s01336581 73Tcm003s07402719 74Tcm001s00947643 75Tcm006s26664133
76Tcm002s20575712 77TcSNP529 78TcSNP1458 79TcSNP60 80TcSNP430
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240