SNP Profiles of SCA-11   View Data

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 Key

 1234567891011121314
_Input profile
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
1._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
2._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
3._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
4._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
5._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
6._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
7._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
8._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
9._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
10._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
11._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
12._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
13._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
14._GC-08-157-3-56
AT_CCCCAGAGTTTTCCTTAGTTTTTT
15._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTT_TT
16._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
17._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
18._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTT_TTTTTT
19._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
20._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
21._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
22._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
23._GC-08-157-3-56
ATCCCCCCAG_TTTTCCTTAGTTTTTT
24._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
25._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
26._SCA_11
ATCCCCCC____CCTTAG_TT_
27._SCA_11
ATCCCCCC____CCTTAG_TT_
28._SCA_11
ATCCCCCC____CCTTAG_TT_
29._SCA_11
ATCCCCCC____CCTTAG_TT_
30._SCA_11
ATCCCCCC____CCTTAG_TT_
31._SCA_11
ATCCCCCC____CCTTAG_TT_
32._SCA_11
ATCCCCCC____CCTTAG_TT_
33._SCA_11
ATCCCCCC____CCTTAG_TT_
34._SCA_11
ATCCCCCC____CCTTAG_TT_
35._SCA_11
ATCCCCCC____CCTTAG_TT_
36._SCA_11
ATCCCCCC____CCTTAG_TT_
37._SCA_11
ATCCCCCC____CCTTAG_TT_
38._SCA_11
ATCCCCCC____CCTTAG_TT_
39._SCA_11
ATCCCCCC____CCTTAG_TT_
40._SCA_11
ATCCCCCC____CCTTAG_TT_
41._SCA_11
ATCCCCCC____CCTTAG_TT_
42._SCA_11
ATCCCCCC____CCTTAG_TT_
43._SCA_11
ATCCCCCC____CCTTAG_TT_
44._SCA_11
ATCCCCCC____CCTTAG_TT_
45._SCA_11
ATCCCCCC____CCTTAG_TT_
46._SCA_11
ATCCCCCC____CCTTAG_TT_
47._SCA_11
ATCCCCCC____CCTT__TT_
48._SCA_11
ATCCCCCC____CCTTAG___
49._SCA_11
AT_CCCC____CCTTAG_TT_
50._SCA_11
ATCCCCCC____CCTTAG_TT_
51._SCA_11
ATCCCCCC____CCTTAG_TT_
52._RUQ_374
AACCCCCC____CCCTAA_TT_
53._SCA_11
AACCCCCC____CCTTAA_TT_
54._RUQ_374
__CCCC__CC_CC__TTTT_
55._RUQ_1686
ATCC_CCAGAG_AAGG_AGAAAAAA
56._RUQ_1686
___AA____CC___CT_
57._MITC-000057
AACC_CCGGAA_AAGG_AAAAAAAA
58._SCA_11
AAAATTCC____CTTTGG_CC_
 1516171819202122232425262728
_Input profile
ATAAAAGGCCCGCCCCAACTGGAAAAGG
1._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
2._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
3._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
4._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
5._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
6._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
7._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
8._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
9._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
10._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
11._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
12._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
13._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
14._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
15._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
16._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
17._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
18._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
19._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
20._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
21._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
22._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
23._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
24._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
25._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
26._SCA_11
___GG__CC____AAAA_
27._SCA_11
___GG__CC____AAAA_
28._SCA_11
___GG__CC____AAAA_
29._SCA_11
___GG__CC____AAAA_
30._SCA_11
___GG__CC____AAAA_
31._SCA_11
___GG__CC____AAAA_
32._SCA_11
___GG__CC____AAAA_
33._SCA_11
___GG__CC____AAAA_
34._SCA_11
___GG__CC____AAAA_
35._SCA_11
___GG__CC____AAAA_
36._SCA_11
___GG__CC____AAAA_
37._SCA_11
___GG__CC____AAAA_
38._SCA_11
___GG__CC____AAAA_
39._SCA_11
___GG__CC____AAAA_
40._SCA_11
___GG__CC____AAAA_
41._SCA_11
___GG__CC____AAAA_
42._SCA_11
___GG__CC____AAAA_
43._SCA_11
___GG__CC____AAAA_
44._SCA_11
___GG__CC____AAAA_
45._SCA_11
___GG__CC____AAAA_
46._SCA_11
___GG__CC____AAAA_
47._SCA_11
___GG__CC____AAAA_
48._SCA_11
___GG__CC____AAAA_
49._SCA_11
___GG__CC____AAAA_
50._SCA_11
___GG__CC____AAAA_
51._SCA_11
___GG__CC____AAAA_
52._RUQ_374
___GG__CC____AAAA_
53._SCA_11
___GG__CC____AAAA_
54._RUQ_374
_____GG____GG_AAGG
55._RUQ_1686
ATAAAAGGGG_CCGGAAAGGGAAAACC
56._RUQ_1686
__GG__GG_CT__GG_ATCC
57._MITC-000057
AAACAAGGGG_CCGGAGGGGGAAAA_
58._SCA_11
___AA__GG____TTAT_
 2930313233343536373839404142
_Input profile
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
1._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
2._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
3._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
4._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
5._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
6._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
7._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
8._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
9._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
10._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
11._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
12._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
13._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
14._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
15._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
16._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTT_AGCCGG
17._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
18._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
19._GC-08-157-3-56
_TTTTTTGGCGCCAAGGTTTTAGCCGG
20._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
21._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCC_
22._GC-08-157-3-56
CCTTTTTTGGCG_AAGGTTTTAGCCGG
23._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
24._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
25._GC-08-157-3-56
_TTTTTTGGCGCCAAGGTTTTAGCCGG
26._SCA_11
CCTT___CG_AAGG__AG__
27._SCA_11
CCTT___CG_AAGG__AG__
28._SCA_11
CCTT___CG_AAGG__AG__
29._SCA_11
CCTT___CG_AAGG__AG__
30._SCA_11
CCTT___CG_AAGG__AG__
31._SCA_11
CCTT___CG_AAGG__AG__
32._SCA_11
CCTT___CG_AAGG__AG__
33._SCA_11
CCTT___CG_AAGG__AG__
34._SCA_11
CCTT___CG_AAGG__AG__
35._SCA_11
CCTT___CG_AAGG__AG__
36._SCA_11
CCTT___CG_AAGG__AG__
37._SCA_11
CCTT___CG_AAGG__AG__
38._SCA_11
CCTT___CG_AAGG__AG__
39._SCA_11
CCTT___CG_AAGG__AG__
40._SCA_11
CCTT___CG_AAGG__AG__
41._SCA_11
CCTT___CG_AAGG__AG__
42._SCA_11
CCTT___CG_AAGG__AG__
43._SCA_11
CCTT___CG_AAGG__AG__
44._SCA_11
CCTT___CG_AAGG__AG__
45._SCA_11
CCTT___CG_AAGG__AG__
46._SCA_11
_TT___CG_AAGG__AG__
47._SCA_11
CCTT___CG_AAGG__AG__
48._SCA_11
CCTT___CG_AAGG__AG__
49._SCA_11
CCTT___CG_AAGG__AG__
50._SCA_11
CCTT___CG_AAGG__AG__
51._SCA_11
_TT___CG_AAGG__AG__
52._RUQ_374
CCTT___CC_AAGG__AG__
53._SCA_11
CCTT___CC_AAGG__AA__
54._RUQ_374
CC___AGCCCCAAGG__AACC_
55._RUQ_1686
GGTTAAAAGGCGCCAACCAAAAAGGGGG
56._RUQ_1686
GG___GGGG____TT_CC_
57._MITC-000057
GGTTAAAAAGCCCCAACCAAAAAAGGGG
58._SCA_11
CGAA___CC_AATT__AA__
 4344454647484950515253545556
_Input profile
CCGGTTTTGGAGAACCCCAAAAGGTTTT
1._GC-01-117-6-14
CCGGTTTTGGAGAACCCCAAAAGGTTTT
2._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
3._GC-01-117-6-14
CCGGTTTTGGAGAACCCCAAAAGGTTTT
4._GC-01-117-6-14
CCGGTTTTGGAGAACCCCAAAAGGTTTT
5._GC-01-117-6-14
CCGGTTTTGGAGAACCCCAAAAGGTTTT
6._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
7._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
8._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
9._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
10._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
11._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
12._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
13._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
14._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
15._GC-01-117-6-14
CCGGTTTTGGAGAACCCCAAAAGGTTTT
16._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
17._GC-08-157-3-56
CCGGTTTTGGAG_CCCCAAAAGGTTTT
18._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
19._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
20._GC-08-157-3-56
CCGGTTTTGGAG_CCCCAAAAGGTTTT
21._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
22._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
23._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
24._GC-01-117-6-14
CCGGTTTTGGAGAACCCCAAAAGG_TT
25._GC-08-157-3-56
CCGGTTTTGGAGAACCCCAAAAGGTTTT
26._SCA_11
___TT_________TT
27._SCA_11
___TT_________TT
28._SCA_11
___TT_________TT
29._SCA_11
___TT_________TT
30._SCA_11
___TT_________TT
31._SCA_11
___TT_________TT
32._SCA_11
___TT_________TT
33._SCA_11
___TT_________TT
34._SCA_11
___TT_________TT
35._SCA_11
___TT_________TT
36._SCA_11
___TT_________TT
37._SCA_11
___TT_________TT
38._SCA_11
___TT_________TT
39._SCA_11
___TT_________TT
40._SCA_11
___TT_________TT
41._SCA_11
___TT_________TT
42._SCA_11
___TT_________TT
43._SCA_11
___TT_________TT
44._SCA_11
___TT_________TT
45._SCA_11
___TT_________TT
46._SCA_11
___TT_________TT
47._SCA_11
___TT_________TT
48._SCA_11
___TT_________TT
49._SCA_11
___TT_________TT
50._SCA_11
___TT_________TT
51._SCA_11
___TT_________TT
52._RUQ_374
___TT_________TT
53._SCA_11
___TT_________TT
54._RUQ_374
_GGTT__AA______CCTT
55._RUQ_1686
GGCC_AA_AGAAGG_AAAACCAGAA
56._RUQ_1686
__TT_AA________CC
57._MITC-000057
GGCC_AA_AAAAGG_AAAACCGGAA
58._SCA_11
___CC_________CT
 5758596061626364656667686970
_Input profile
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
1._GC-01-117-6-14
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
2._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
3._GC-01-117-6-14
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
4._GC-01-117-6-14
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
5._GC-01-117-6-14
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
6._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
7._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
8._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
9._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
10._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
11._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
12._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
13._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAA_GGAA
14._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
15._GC-01-117-6-14
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
16._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
17._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
18._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
19._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
20._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
21._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
22._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
23._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
24._GC-01-117-6-14
CCTT_CCCCTTCCCGGGAAAAGGGGAA
25._GC-08-157-3-56
CCTTAGCCCCTTCCCGGGAAAAGGGGAA
26._SCA_11
CC__CC_TTCCCG_AAAAGGGG_
27._SCA_11
CC__CC_TTCCCG_AAAAGGGG_
28._SCA_11
CC__CC_TTCCCG_AAAAGGGG_
29._SCA_11
CC__CC_TTCCCG_AAAAGGGG_
30._SCA_11
CC__CC_TTCCCG_AAAAGGGG_
31._SCA_11
CC__CC_TTCCCG_AAAAGGGG_
32._SCA_11
CC__CC_TTCCCG_AAAAGGGG_
33._SCA_11
CC__CC_TTCCCG_AAAAGGGG_
34._SCA_11
CC__CC_TTCCCG_AAAAGGGG_
35._SCA_11
CC__CC_TTCCCG_AAAAGGGG_
36._SCA_11
CC__CC_TTCCCG_AAAAGGGG_
37._SCA_11
CC__CC_TTCCCG_AAAAGGGG_
38._SCA_11
CC__CC_TTCCCG_AAAAGGGG_
39._SCA_11
CC__CC_TTCCCG_AAAAGGGG_
40._SCA_11
CC__CC_TTCCCG_AAAAGGGG_
41._SCA_11
CC__CC_TTCCCG_AAAAGGGG_
42._SCA_11
CC__CC_TTCCCG_AAAAGGGG_
43._SCA_11
CC__CC_TTCCCG_AAAAGGGG_
44._SCA_11
CC__CC_TTCCCG_AAAAGGGG_
45._SCA_11
CC__CC_TTCCCG_AAAAGGGG_
46._SCA_11
CC__CC_TTCCCG_AAAAGGGG_
47._SCA_11
CC__CC_TTCCCG_AAAAGGGG_
48._SCA_11
CC__CC_TTCCCG_AAAAGGGG_
49._SCA_11
CC__CC_TTCCCG_AAAAGGGG_
50._SCA_11
CC__CC_TTCCCG_AAAA_GG_
51._SCA_11
CC__CC_TTCCCG_AAAAGGGG_
52._RUQ_374
CC__CG_TTCCCG_ACAGGGGG_
53._SCA_11
CC__CG_TTCCCG_ACAGGGGG_
54._RUQ_374
_TT-CGCCTTCC_GGCCAGGGGGAA
55._RUQ_1686
GGAAAGGGGGAACCCGGGAAAACCCCAA
56._RUQ_1686
___CGCC_AA_GGACAG___
57._MITC-000057
GGAAAGCGGGAACCCGGGACAGCCCCAA
58._SCA_11
CT__CC_CTACGG_CCAATTGG_
 7172737475767778798081828384
_Input profile
CTCCAACTCCGGCCCCAAAACCCCAACC
1._GC-01-117-6-14
CTCCAACTCCGGCCCCAAAACCCCAACC
2._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
3._GC-01-117-6-14
CTCCAACTCCGGCCCCAAAACCCCAACC
4._GC-01-117-6-14
CTCCAACTCCGGCCCCAAAACCCCAACC
5._GC-01-117-6-14
CTCCAACTCCGGCCCCAAAACCCCAACC
6._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
7._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
8._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
9._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
10._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
11._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
12._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
13._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
14._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
15._GC-01-117-6-14
CTCCAACTCCGGCCCCAAAACCCCAACC
16._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
17._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
18._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
19._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
20._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
21._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
22._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
23._GC-08-157-3-56
CTCCAACTCCGGCCCCAAAACCCCAACC
24._GC-01-117-6-14
CTCCAACTCCGGCCCCAAAACCCCAACC
25._GC-08-157-3-56
CTCCAA_CCGGCCCCAAAACCCCAACC
26._SCA_11
__AACT_____AACC___
27._SCA_11
__AACT_____AACC___
28._SCA_11
__AACT_____AACC___
29._SCA_11
__AACT_____AACC___
30._SCA_11
__AACT_____AACC___
31._SCA_11
__AACT_____AACC___
32._SCA_11
__AACT_____AACC___
33._SCA_11
__AACT_____AACC___
34._SCA_11
__AACT_____AACC___
35._SCA_11
__AACT_____AACC___
36._SCA_11
__AACT_____AACC___
37._SCA_11
__AACT_____AACC___
38._SCA_11
__AACT_____AACC___
39._SCA_11
__AACT_____AACC___
40._SCA_11
__AACT_____AACC___
41._SCA_11
__AACT_____AACC___
42._SCA_11
__AACT_____AACC___
43._SCA_11
__AACT_____AACC___
44._SCA_11
__AACT_____AACC___
45._SCA_11
__AACT_____AACC___
46._SCA_11
__AACT_____AACC___
47._SCA_11
__AACT_____AACC___
48._SCA_11
__AACT_____AACC___
49._SCA_11
__AACT_____AACC___
50._SCA_11
__AACT_____AACC___
51._SCA_11
__AA______AACC___
52._RUQ_374
__GGCC_____AACC___
53._SCA_11
__GGCC_____AACC___
54._RUQ_374
_________AACC__CC
55._RUQ_1686
___AGCCGGCCCC_AAGGGGAACC
56._RUQ_1686
_CG________GG___
57._MITC-000057
___GGCCGGCCCC_AAGGGGAACC
58._SCA_11
__AATT_____CCGG___
 8586878889909192939495   
_Input profile
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
1._GC-01-117-6-14
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
2._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
3._GC-01-117-6-14
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
4._GC-01-117-6-14
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
5._GC-01-117-6-14
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
6._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
7._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
8._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
9._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
10._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
11._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
12._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
13._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
14._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
15._GC-01-117-6-14
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
16._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
17._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
18._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
19._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
20._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
21._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
22._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
23._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
24._GC-01-117-6-14
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
25._GC-08-157-3-56
TTCCCCCCGGCCTTGGCCTTGGX_XX_XX_X
26._SCA_11
TTCCCC_GG_TTGGCC__X_XX_XX_X
27._SCA_11
TTCCCC_GG_TTGGCC__X_XX_XX_X
28._SCA_11
TTCCCC_GG_TTGGCC__X_XX_XX_X
29._SCA_11
TTCCCC_GG_TTGGCC__X_XX_XX_X
30._SCA_11
TTCCCC_GG_TTGGCC__X_XX_XX_X
31._SCA_11
TTCCCC_GG_TTGGCC__X_XX_XX_X
32._SCA_11
TTCCCC_GG_TTGGCC__X_XX_XX_X
33._SCA_11
TTCCCC_GG_TTGGCC__X_XX_XX_X
34._SCA_11
TTCCCC_GG_TTGGCC__X_XX_XX_X
35._SCA_11
TTCCCC_GG_TTGGCC__X_XX_XX_X
36._SCA_11
TTCCCC_GG_TTGGCC__X_XX_XX_X
37._SCA_11
TTCCCC_GG_TTGGCC__X_XX_XX_X
38._SCA_11
TTCCCC_GG_TTGGCC__X_XX_XX_X
39._SCA_11
TTCCCC_GG_TTGGCC__X_XX_XX_X
40._SCA_11
TTCCCC_GG_TTGGCC__X_XX_XX_X
41._SCA_11
TTCCCC_GG_TTGGCC__X_XX_XX_X
42._SCA_11
TTCCCC_GG_TTGGCC__X_XX_XX_X
43._SCA_11
TTCCCC_GG_TTGGCC__X_XX_XX_X
44._SCA_11
TTCCCC_GG_TTGGCC__X_XX_XX_X
45._SCA_11
TTCCCC_GG_TTGGCC__X_XX_XX_X
46._SCA_11
TTCCCC_GG_TTGGCC__X_XX_XX_X
47._SCA_11
TTCCCC_GG_TTGGCC__X_XX_XX_X
48._SCA_11
TTCCCC_GG_TTGGCC__X_XX_XX_X
49._SCA_11
TTCCCC_GG_TTGGCC__X_XX_XX_X
50._SCA_11
TTCCCC_GG_TTGGCC__X_XX_XX_X
51._SCA_11
TTCCCC_GG_TTGGCC__X_XX_XX_X
52._RUQ_374
TTCCCC_GG_CTGTCT__X_XX_XX_X
53._SCA_11
TTCCCC_GG_CTGTCT__X_XX_XX_X
54._RUQ_374
TT___GGCCCTGT___X_XX_XX_X
55._RUQ_1686
AAGG_GG__AACCGGAAGGX_XX_XX_X
56._RUQ_1686
_CT_________X_XX_XX_X
57._MITC-000057
AAGG_GG__AGACAGAAGGX_XX_XX_X
58._SCA_11
CCCTTT_AG_CTGGTT__X_XX_XX_X

Input profile: SCA_11 GC-08-157-3-56

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

1._SCA_11 GC-01-117-6-14

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._SCA_11 GC-08-157-3-56

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._SCA_11 GC-01-117-6-14

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

4._SCA_11 GC-01-117-6-14

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

5._SCA_11 GC-01-117-6-14

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

6._SCA_11 GC-08-157-3-56

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._SCA_11 GC-08-157-3-56

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._SCA_11 GC-08-157-3-56

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

9._SCA_11 GC-08-157-3-56

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._SCA_11 GC-08-157-3-56

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

11._SCA_11 GC-08-157-3-56

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 20
Notes: 20
 Mars, 2018

12._SCA_11 GC-08-157-3-56

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 23
Notes: 23
 Mars, 2018

13._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

14._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

15._SCA_11 GC-01-117-6-14

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

16._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

17._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

18._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

19._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 18
Notes: 18
 Mars, 2018

20._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 19
Notes: 19
 Mars, 2018

21._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 24
Notes: 24
 Mars, 2018

22._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 25
Notes: 25
 Mars, 2018

23._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 26
Notes: 26
 Mars, 2018

24._SCA_11 GC-01-117-6-14

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

25._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

26._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 26
 Dapeng Zhang, 2016

27._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 25
 Dapeng Zhang, 2016

28._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 24
 Dapeng Zhang, 2016

29._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 23
 Dapeng Zhang, 2016

30._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 20
 Dapeng Zhang, 2016

31._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 19
 Dapeng Zhang, 2016

32._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1614 13
 Dapeng Zhang, 2016

33._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1614 1 > FP
 Dapeng Zhang, 2016

34._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1614 10 > F
 Dapeng Zhang, 2016

35._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1614 2 > FP
 Dapeng Zhang, 2016

36._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1614 3 > FP
 Dapeng Zhang, 2016

37._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 3
 Dapeng Zhang, 2016

38._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 5
 Dapeng Zhang, 2016

39._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 6
 Dapeng Zhang, 2016

40._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 8
 Dapeng Zhang, 2016

41._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 9
 Dapeng Zhang, 2016

42._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 10
 Dapeng Zhang, 2016

43._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 11
 Dapeng Zhang, 2016

44._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 14
 Dapeng Zhang, 2016

45._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 4
 Dapeng Zhang, 2016

46._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 18
 Dapeng Zhang, 2016

47._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 15
 Dapeng Zhang, 2016

48._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1614 9
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

49._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 1
 Dapeng Zhang, 2016

50._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 2
 Dapeng Zhang, 2016

51._SCA_11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 13
 Dapeng Zhang, 2016

52._SCA_11 RUQ_374

83.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

53._SCA_11

83.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 639
 Dapeng Zhang, 2016

54._SCA_11 RUQ_374

82.1 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

55._SCA_11 RUQ_1686

50.6 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

56._SCA_11 RUQ_1686

50 %
26 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

57._SCA_11 MITC-000057

43.8 %
80 shared markers

USDA-SHRS, United States of America
 Mars, 2018

58._SCA_11

40 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240