SNP Profiles of SCA-11   View Data

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 Key

 1234567891011121314
_Input profile
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
1._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
2._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
3._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
4._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
5._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
6._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
7._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
8._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
9._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
10._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
11._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
12._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
13._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
14._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
15._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
16._GC-08-157-3-56
AT_CCCCAGAGTTTTCCTTAGTTTTTT
17._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTT_TT
18._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
19._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTT_TTTTTT
20._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
21._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
22._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
23._GC-08-157-3-56
ATCCCCCCAG_TTTTCCTTAGTTTTTT
24._GC-01-117-6-14
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
25._GC-08-157-3-56
ATCCCCCCAGAGTTTTCCTTAGTTTTTT
26._SCA_11
ATCCCCCC____CCTTAG_TT_
27._SCA_11
ATCCCCCC____CCTTAG_TT_
28._SCA_11
ATCCCCCC____CCTTAG_TT_
29._SCA_11
ATCCCCCC____CCTTAG_TT_
30._SCA_11
ATCCCCCC____CCTTAG_TT_
31._SCA_11
ATCCCCCC____CCTTAG_TT_
32._SCA_11
ATCCCCCC____CCTTAG_TT_
33._SCA_11
ATCCCCCC____CCTTAG_TT_
34._SCA_11
ATCCCCCC____CCTTAG_TT_
35._SCA_11
ATCCCCCC____CCTTAG_TT_
36._SCA_11
ATCCCCCC____CCTTAG_TT_
37._SCA_11
ATCCCCCC____CCTTAG_TT_
38._SCA_11
ATCCCCCC____CCTTAG_TT_
39._SCA_11
ATCCCCCC____CCTTAG_TT_
40._SCA_11
ATCCCCCC____CCTTAG_TT_
41._SCA_11
ATCCCCCC____CCTTAG_TT_
42._SCA_11
ATCCCCCC____CCTTAG_TT_
43._SCA_11
ATCCCCCC____CCTTAG_TT_
44._SCA_11
ATCCCCCC____CCTTAG_TT_
45._SCA_11
ATCCCCCC____CCTTAG_TT_
46._SCA_11
ATCCCCCC____CCTTAG_TT_
47._SCA_11
ATCCCCCC____CCTT__TT_
48._SCA_11
ATCCCCCC____CCTTAG___
49._SCA_11
AT_CCCC____CCTTAG_TT_
50._SCA_11
ATCCCCCC____CCTTAG_TT_
51._SCA_11
ATCCCCCC____CCTTAG_TT_
52._RUQ_374
AACCCCCC____CCCTAA_TT_
53._SCA_11
AACCCCCC____CCTTAA_TT_
54._RUQ_374
__CCCC__CC_CC__TTTT_
55._RUQ_1686
___AA____CC___CT_
56._RUQ_1686
ATCC_CCAGAG_AAGG_AGAAAAAA
57._MITC-000057
AACC_CCGGAA_AAGG_AAAAAAAA
58._SCA_11
AAAATTCC____CTTTGG_CC_
 1516171819202122232425262728
_Input profile
ATAAAAGGCCCGCCCCAACTGGAAAAGG
1._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
2._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
3._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
4._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
5._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
6._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
7._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
8._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
9._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
10._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
11._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
12._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
13._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
14._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
15._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
16._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
17._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
18._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
19._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
20._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
21._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
22._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
23._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
24._GC-01-117-6-14
ATAAAAGGCCCGCCCCAACTGGAAAAGG
25._GC-08-157-3-56
ATAAAAGGCCCGCCCCAACTGGAAAAGG
26._SCA_11
___GG__CC____AAAA_
27._SCA_11
___GG__CC____AAAA_
28._SCA_11
___GG__CC____AAAA_
29._SCA_11
___GG__CC____AAAA_
30._SCA_11
___GG__CC____AAAA_
31._SCA_11
___GG__CC____AAAA_
32._SCA_11
___GG__CC____AAAA_
33._SCA_11
___GG__CC____AAAA_
34._SCA_11
___GG__CC____AAAA_
35._SCA_11
___GG__CC____AAAA_
36._SCA_11
___GG__CC____AAAA_
37._SCA_11
___GG__CC____AAAA_
38._SCA_11
___GG__CC____AAAA_
39._SCA_11
___GG__CC____AAAA_
40._SCA_11
___GG__CC____AAAA_
41._SCA_11
___GG__CC____AAAA_
42._SCA_11
___GG__CC____AAAA_
43._SCA_11
___GG__CC____AAAA_
44._SCA_11
___GG__CC____AAAA_
45._SCA_11
___GG__CC____AAAA_
46._SCA_11
___GG__CC____AAAA_
47._SCA_11
___GG__CC____AAAA_
48._SCA_11
___GG__CC____AAAA_
49._SCA_11
___GG__CC____AAAA_
50._SCA_11
___GG__CC____AAAA_
51._SCA_11
___GG__CC____AAAA_
52._RUQ_374
___GG__CC____AAAA_
53._SCA_11
___GG__CC____AAAA_
54._RUQ_374
_____GG____GG_AAGG
55._RUQ_1686
__GG__GG_CT__GG_ATCC
56._RUQ_1686
ATAAAAGGGG_CCGGAAAGGGAAAACC
57._MITC-000057
AAACAAGGGG_CCGGAGGGGGAAAA_
58._SCA_11
___AA__GG____TTAT_
 2930313233343536373839404142
_Input profile
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
1._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
2._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
3._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
4._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
5._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
6._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
7._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
8._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
9._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
10._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
11._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
12._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
13._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
14._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
15._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
16._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
17._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
18._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTT_AGCCGG
19._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
20._GC-08-157-3-56
_TTTTTTGGCGCCAAGGTTTTAGCCGG
21._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCC_
22._GC-08-157-3-56
CCTTTTTTGGCG_AAGGTTTTAGCCGG
23._GC-08-157-3-56
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
24._GC-01-117-6-14
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
25._GC-08-157-3-56
_TTTTTTGGCGCCAAGGTTTTAGCCGG
26._SCA_11
CCTT___CG_AAGG__AG__
27._SCA_11
CCTT___CG_AAGG__AG__
28._SCA_11
CCTT___CG_AAGG__AG__
29._SCA_11
CCTT___CG_AAGG__AG__
30._SCA_11
CCTT___CG_AAGG__AG__
31._SCA_11
CCTT___CG_AAGG__AG__
32._SCA_11
CCTT___CG_AAGG__AG__
33._SCA_11
CCTT___CG_AAGG__AG__
34._SCA_11
CCTT___CG_AAGG__AG__
35._SCA_11
CCTT___CG_AAGG__AG__
36._SCA_11
CCTT___CG_AAGG__AG__
37._SCA_11
CCTT___CG_AAGG__AG__
38._SCA_11
CCTT___CG_AAGG__AG__
39._SCA_11
CCTT___CG_AAGG__AG__
40._SCA_11
CCTT___CG_AAGG__AG__
41._SCA_11
CCTT___CG_AAGG__AG__
42._SCA_11
CCTT___CG_AAGG__AG__
43._SCA_11
CCTT___CG_AAGG__AG__
44._SCA_11
CCTT___CG_AAGG__AG__
45._SCA_11
CCTT___CG_AAGG__AG__
46._SCA_11
_TT___CG_AAGG__AG__
47._SCA_11
CCTT___CG_AAGG__AG__
48._SCA_11
CCTT___CG_AAGG__AG__
49._SCA_11
CCTT___CG_AAGG__AG__
50._SCA_11
CCTT___CG_AAGG__AG__
51._SCA_11
_TT___CG_AAGG__AG__
52._RUQ_374
CCTT___CC_AAGG__AG__
53._SCA_11
CCTT___CC_AAGG__AA__
54._RUQ_374
CC___AGCCCCAAGG__AACC_
55._RUQ_1686
GG___GGGG____TT_CC_
56._RUQ_1686
GGTTAAAAGGCGCCAACCAAAAAGGGGG
57._MITC-000057
GGTTAAAAAGCCCCAACCAAAAAAGGGG
58._SCA_11
CGAA___CC_AATT__AA__
 4344454647484950515253545556
_Input profile
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
1._GC-01-117-6-14
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
2._GC-08-157-3-56
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
3._GC-01-117-6-14
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
4._GC-01-117-6-14
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
5._GC-01-117-6-14
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
6._GC-08-157-3-56
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
7._GC-08-157-3-56
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
8._GC-08-157-3-56
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
9._GC-08-157-3-56
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
10._GC-08-157-3-56
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
11._GC-08-157-3-56
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
12._GC-08-157-3-56
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
13._GC-08-157-3-56
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
14._GC-08-157-3-56
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
15._GC-08-157-3-56
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
16._GC-08-157-3-56
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
17._GC-01-117-6-14
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
18._GC-08-157-3-56
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
19._GC-08-157-3-56
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
20._GC-08-157-3-56
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
21._GC-08-157-3-56
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
22._GC-08-157-3-56
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
23._GC-08-157-3-56
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
24._GC-01-117-6-14
CCGGTTTTGGAGCCCCAAAAGG_TTCC
25._GC-08-157-3-56
CCGGTTTTGGAGCCCCAAAAGGTTTTCC
26._SCA_11
___TT________TTCC
27._SCA_11
___TT________TTCC
28._SCA_11
___TT________TTCC
29._SCA_11
___TT________TTCC
30._SCA_11
___TT________TTCC
31._SCA_11
___TT________TTCC
32._SCA_11
___TT________TTCC
33._SCA_11
___TT________TTCC
34._SCA_11
___TT________TTCC
35._SCA_11
___TT________TTCC
36._SCA_11
___TT________TTCC
37._SCA_11
___TT________TTCC
38._SCA_11
___TT________TTCC
39._SCA_11
___TT________TTCC
40._SCA_11
___TT________TTCC
41._SCA_11
___TT________TTCC
42._SCA_11
___TT________TTCC
43._SCA_11
___TT________TTCC
44._SCA_11
___TT________TTCC
45._SCA_11
___TT________TTCC
46._SCA_11
___TT________TTCC
47._SCA_11
___TT________TTCC
48._SCA_11
___TT________TTCC
49._SCA_11
___TT________TTCC
50._SCA_11
___TT________TTCC
51._SCA_11
___TT________TTCC
52._RUQ_374
___TT________TTCC
53._SCA_11
___TT________TTCC
54._RUQ_374
_GGTT__AA_____CCTT_
55._RUQ_1686
__TT_AA_______CC_
56._RUQ_1686
GGCC_AA_AGGG_AAAACCAGAAGG
57._MITC-000057
GGCC_AA_AAGG_AAAACCGGAAGG
58._SCA_11
___CC________CTCT
 5758596061626364656667686970
_Input profile
TTAGCCCCTTCCCGGGAAAAGGGGAACT
1._GC-01-117-6-14
TTAGCCCCTTCCCGGGAAAAGGGGAACT
2._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
3._GC-01-117-6-14
TTAGCCCCTTCCCGGGAAAAGGGGAACT
4._GC-01-117-6-14
TTAGCCCCTTCCCGGGAAAAGGGGAACT
5._GC-01-117-6-14
TTAGCCCCTTCCCGGGAAAAGGGGAACT
6._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
7._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
8._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
9._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
10._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
11._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
12._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
13._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
14._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
15._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAA_GGAACT
16._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
17._GC-01-117-6-14
TTAGCCCCTTCCCGGGAAAAGGGGAACT
18._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
19._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
20._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
21._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
22._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
23._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
24._GC-01-117-6-14
TT_CCCCTTCCCGGGAAAAGGGGAACT
25._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
26._SCA_11
__CC_TTCCCG_AAAAGGGG__
27._SCA_11
__CC_TTCCCG_AAAAGGGG__
28._SCA_11
__CC_TTCCCG_AAAAGGGG__
29._SCA_11
__CC_TTCCCG_AAAAGGGG__
30._SCA_11
__CC_TTCCCG_AAAAGGGG__
31._SCA_11
__CC_TTCCCG_AAAAGGGG__
32._SCA_11
__CC_TTCCCG_AAAAGGGG__
33._SCA_11
__CC_TTCCCG_AAAAGGGG__
34._SCA_11
__CC_TTCCCG_AAAAGGGG__
35._SCA_11
__CC_TTCCCG_AAAAGGGG__
36._SCA_11
__CC_TTCCCG_AAAAGGGG__
37._SCA_11
__CC_TTCCCG_AAAAGGGG__
38._SCA_11
__CC_TTCCCG_AAAAGGGG__
39._SCA_11
__CC_TTCCCG_AAAAGGGG__
40._SCA_11
__CC_TTCCCG_AAAAGGGG__
41._SCA_11
__CC_TTCCCG_AAAAGGGG__
42._SCA_11
__CC_TTCCCG_AAAAGGGG__
43._SCA_11
__CC_TTCCCG_AAAAGGGG__
44._SCA_11
__CC_TTCCCG_AAAAGGGG__
45._SCA_11
__CC_TTCCCG_AAAAGGGG__
46._SCA_11
__CC_TTCCCG_AAAAGGGG__
47._SCA_11
__CC_TTCCCG_AAAAGGGG__
48._SCA_11
__CC_TTCCCG_AAAAGGGG__
49._SCA_11
__CC_TTCCCG_AAAAGGGG__
50._SCA_11
__CC_TTCCCG_AAAA_GG__
51._SCA_11
__CC_TTCCCG_AAAAGGGG__
52._RUQ_374
__CG_TTCCCG_ACAGGGGG__
53._SCA_11
__CG_TTCCCG_ACAGGGGG__
54._RUQ_374
TT-CGCCTTCC_GGCCAGGGGGAA_
55._RUQ_1686
__CGCC_AA_GGACAG____
56._RUQ_1686
AAAGGGGGAACCCGGGAAAACCCCAA_
57._MITC-000057
AAAGCGGGAACCCGGGACAGCCCCAA_
58._SCA_11
__CC_CTACGG_CCAATTGG__
 7172737475767778798081828384
_Input profile
CCAACTCCGGCCCCAAAACCCCAACCTT
1._GC-01-117-6-14
CCAACTCCGGCCCCAAAACCCCAACCTT
2._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
3._GC-01-117-6-14
CCAACTCCGGCCCCAAAACCCCAACCTT
4._GC-01-117-6-14
CCAACTCCGGCCCCAAAACCCCAACCTT
5._GC-01-117-6-14
CCAACTCCGGCCCCAAAACCCCAACCTT
6._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
7._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
8._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
9._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
10._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
11._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
12._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
13._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
14._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
15._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
16._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
17._GC-01-117-6-14
CCAACTCCGGCCCCAAAACCCCAACCTT
18._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
19._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
20._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
21._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
22._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
23._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
24._GC-01-117-6-14
CCAACTCCGGCCCCAAAACCCCAACCTT
25._GC-08-157-3-56
CCAA_CCGGCCCCAAAACCCCAACCTT
26._SCA_11
_AACT_____AACC___TT
27._SCA_11
_AACT_____AACC___TT
28._SCA_11
_AACT_____AACC___TT
29._SCA_11
_AACT_____AACC___TT
30._SCA_11
_AACT_____AACC___TT
31._SCA_11
_AACT_____AACC___TT
32._SCA_11
_AACT_____AACC___TT
33._SCA_11
_AACT_____AACC___TT
34._SCA_11
_AACT_____AACC___TT
35._SCA_11
_AACT_____AACC___TT
36._SCA_11
_AACT_____AACC___TT
37._SCA_11
_AACT_____AACC___TT
38._SCA_11
_AACT_____AACC___TT
39._SCA_11
_AACT_____AACC___TT
40._SCA_11
_AACT_____AACC___TT
41._SCA_11
_AACT_____AACC___TT
42._SCA_11
_AACT_____AACC___TT
43._SCA_11
_AACT_____AACC___TT
44._SCA_11
_AACT_____AACC___TT
45._SCA_11
_AACT_____AACC___TT
46._SCA_11
_AACT_____AACC___TT
47._SCA_11
_AACT_____AACC___TT
48._SCA_11
_AACT_____AACC___TT
49._SCA_11
_AACT_____AACC___TT
50._SCA_11
_AACT_____AACC___TT
51._SCA_11
_AA______AACC___TT
52._RUQ_374
_GGCC_____AACC___TT
53._SCA_11
_GGCC_____AACC___TT
54._RUQ_374
________AACC__CCTT
55._RUQ_1686
CG________GG____
56._RUQ_1686
__AGCCGGCCCC_AAGGGGAACCAA
57._MITC-000057
__GGCCGGCCCC_AAGGGGAACCAA
58._SCA_11
_AATT_____CCGG___CC
 85868788899091929394    
_Input profile
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
1._GC-01-117-6-14
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
2._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
3._GC-01-117-6-14
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
4._GC-01-117-6-14
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
5._GC-01-117-6-14
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
6._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
7._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
8._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
9._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
10._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
11._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
12._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
13._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
14._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
15._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
16._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
17._GC-01-117-6-14
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
18._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
19._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
20._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
21._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
22._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
23._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
24._GC-01-117-6-14
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
25._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
26._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
27._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
28._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
29._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
30._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
31._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
32._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
33._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
34._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
35._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
36._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
37._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
38._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
39._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
40._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
41._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
42._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
43._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
44._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
45._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
46._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
47._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
48._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
49._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
50._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
51._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
52._RUQ_374
CCCC_GG_CTGTCT__X_XX_XX_XX_X
53._SCA_11
CCCC_GG_CTGTCT__X_XX_XX_XX_X
54._RUQ_374
___GGCCCTGT___X_XX_XX_XX_X
55._RUQ_1686
CT_________X_XX_XX_XX_X
56._RUQ_1686
GG_GG__AACCGGAAGGX_XX_XX_XX_X
57._MITC-000057
GG_GG__AGACAGAAGGX_XX_XX_XX_X
58._SCA_11
CTTT_AG_CTGGTT__X_XX_XX_XX_X

Input profile: SCA_11 GC-08-157-3-56

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

1._SCA_11 GC-01-117-6-14

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._SCA_11 GC-01-117-6-14

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

4._SCA_11 GC-01-117-6-14

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

5._SCA_11 GC-01-117-6-14

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

6._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

9._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

11._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

12._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 19
Notes: 19
 Mars, 2018

13._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 20
Notes: 20
 Mars, 2018

14._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 23
Notes: 23
 Mars, 2018

15._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

17._SCA_11 GC-01-117-6-14

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

18._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

19._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

20._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 18
Notes: 18
 Mars, 2018

21._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 24
Notes: 24
 Mars, 2018

22._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 25
Notes: 25
 Mars, 2018

23._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 26
Notes: 26
 Mars, 2018

24._SCA_11 GC-01-117-6-14

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

25._SCA_11 GC-08-157-3-56

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

26._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 26
 Dapeng Zhang, 2016

27._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 25
 Dapeng Zhang, 2016

28._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 24
 Dapeng Zhang, 2016

29._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 23
 Dapeng Zhang, 2016

30._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 20
 Dapeng Zhang, 2016

31._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 19
 Dapeng Zhang, 2016

32._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1614 13
 Dapeng Zhang, 2016

33._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1614 1 > FP
 Dapeng Zhang, 2016

34._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1614 10 > F
 Dapeng Zhang, 2016

35._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1614 2 > FP
 Dapeng Zhang, 2016

36._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1614 3 > FP
 Dapeng Zhang, 2016

37._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 3
 Dapeng Zhang, 2016

38._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 5
 Dapeng Zhang, 2016

39._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 6
 Dapeng Zhang, 2016

40._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 8
 Dapeng Zhang, 2016

41._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 9
 Dapeng Zhang, 2016

42._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 10
 Dapeng Zhang, 2016

43._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 11
 Dapeng Zhang, 2016

44._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 14
 Dapeng Zhang, 2016

45._SCA_11

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 4
 Dapeng Zhang, 2016

46._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 18
 Dapeng Zhang, 2016

47._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 15
 Dapeng Zhang, 2016

48._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1614 9
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

49._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 1
 Dapeng Zhang, 2016

50._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 2
 Dapeng Zhang, 2016

51._SCA_11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 13
 Dapeng Zhang, 2016

52._SCA_11 RUQ_374

83.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

53._SCA_11

83.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 639
 Dapeng Zhang, 2016

54._SCA_11 RUQ_374

82.1 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

55._SCA_11 RUQ_1686

50 %
26 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

56._SCA_11 RUQ_1686

50 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

57._SCA_11 MITC-000057

43 %
79 shared markers

USDA-SHRS, United States of America
 Mars, 2018

58._SCA_11

40 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240