SNP Profiles of SCA-11   View Data

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 Key

 1234567891011121314
_Input profile
ATCCCCAGAGTTTTCCTTAGTTTTTTAT
1._GC-01-117-6-14
ATCCCCAGAGTTTTCCTTAGTTTTTTAT
2._GC-08-157-3-56
ATCCCCAGAGTTTTCCTTAGTTTTTTAT
3._GC-08-157-3-56
ATCCCCAGAGTTTTCCTTAGTTTTTTAT
4._GC-01-117-6-14
ATCCCCAGAGTTTTCCTTAGTTTTTTAT
5._GC-01-117-6-14
ATCCCCAGAGTTTTCCTTAGTTTTTTAT
6._GC-01-117-6-14
ATCCCCAGAGTTTTCCTTAGTTTTTTAT
7._GC-08-157-3-56
ATCCCCAGAGTTTTCCTTAGTTTTTTAT
8._GC-08-157-3-56
ATCCCCAGAGTTTTCCTTAGTTTTTTAT
9._GC-08-157-3-56
ATCCCCAGAGTTTTCCTTAGTTTTTTAT
10._GC-08-157-3-56
ATCCCCAGAGTTTTCCTTAGTTTTTTAT
11._GC-08-157-3-56
ATCCCCAGAGTTTTCCTTAGTTTTTTAT
12._GC-08-157-3-56
ATCCCCAGAGTTTTCCTTAGTTTTTTAT
13._GC-08-157-3-56
ATCCCCAGAGTTTTCCTTAGTTTTTTAT
14._GC-08-157-3-56
ATCCCCAGAGTTTTCCTTAGTTTTTTAT
15._GC-01-117-6-14
ATCCCCAGAGTTTTCCTTAGTT_TTAT
16._GC-08-157-3-56
ATCCCCAGAGTTTTCCTTAGTTTTTTAT
17._GC-08-157-3-56
ATCCCCAGAGTTTTCCTTAGTTTTTTAT
18._GC-08-157-3-56
ATCCCCAGAGTTTTCCTT_TTTTTTAT
19._GC-08-157-3-56
ATCCCCAGAGTTTTCCTTAGTTTTTTAT
20._GC-08-157-3-56
ATCCCCAGAGTTTTCCTTAGTTTTTTAT
21._GC-08-157-3-56
ATCCCCAGAGTTTTCCTTAGTTTTTTAT
22._GC-08-157-3-56
ATCCCCAGAGTTTTCCTTAGTTTTTTAT
23._GC-08-157-3-56
ATCCCCAG_TTTTCCTTAGTTTTTTAT
24._GC-01-117-6-14
ATCCCCAGAGTTTTCCTTAGTTTTTTAT
25._GC-08-157-3-56
ATCCCCAGAGTTTTCCTTAGTTTTTTAT
26._SCA_11
ATCCCC____CCTTAG_TT__
27._SCA_11
ATCCCC____CCTTAG_TT__
28._SCA_11
ATCCCC____CCTTAG_TT__
29._SCA_11
ATCCCC____CCTTAG_TT__
30._SCA_11
ATCCCC____CCTTAG_TT__
31._SCA_11
ATCCCC____CCTTAG_TT__
32._SCA_11
ATCCCC____CCTTAG_TT__
33._SCA_11
ATCCCC____CCTTAG_TT__
34._SCA_11
ATCCCC____CCTTAG_TT__
35._SCA_11
ATCCCC____CCTTAG_TT__
36._SCA_11
ATCCCC____CCTTAG_TT__
37._SCA_11
ATCCCC____CCTTAG_TT__
38._SCA_11
ATCCCC____CCTTAG_TT__
39._SCA_11
ATCCCC____CCTTAG_TT__
40._SCA_11
ATCCCC____CCTTAG_TT__
41._SCA_11
ATCCCC____CCTTAG_TT__
42._SCA_11
ATCCCC____CCTTAG_TT__
43._SCA_11
ATCCCC____CCTTAG_TT__
44._SCA_11
ATCCCC____CCTTAG_TT__
45._SCA_11
ATCCCC____CCTTAG_TT__
46._SCA_11
ATCCCC____CCTTAG_TT__
47._SCA_11
ATCCCC____CCTTAG_TT__
48._SCA_11
ATCCCC____CCTT__TT__
49._SCA_11
ATCCCC____CCTTAG____
50._SCA_11
ATCCCC____CCTTAG_TT__
51._SCA_11
ATCCCC____CCTTAG_TT__
52._RUQ_374
AACCCC____CCCTAA_TT__
53._SCA_11
AACCCC____CCTTAA_TT__
54._RUQ_374
_CCCC__CC_CC__TTTT__
55._RUQ_1686
__AA____CC___CT__
56._RUQ_1686
AT_CCAGAG_AAGG_AGAAAAAAAT
57._MITC-000057
AA_CCGGAA_AAGG_AAAAAAAAAA
58._SCA_11
AATTCC____CTTTGG_CC__
 1516171819202122232425262728
_Input profile
AAAAGGCCCGCCCCAACTGGAAAAGGCC
1._GC-01-117-6-14
AAAAGGCCCGCCCCAACTGGAAAAGGCC
2._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
3._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
4._GC-01-117-6-14
AAAAGGCCCGCCCCAACTGGAAAAGGCC
5._GC-01-117-6-14
AAAAGGCCCGCCCCAACTGGAAAAGGCC
6._GC-01-117-6-14
AAAAGGCCCGCCCCAACTGGAAAAGGCC
7._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
8._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
9._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
10._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
11._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
12._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
13._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
14._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
15._GC-01-117-6-14
AAAAGGCCCGCCCCAACTGGAAAAGGCC
16._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
17._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
18._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
19._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGG_
20._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
21._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
22._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
23._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGGCC
24._GC-01-117-6-14
AAAAGGCCCGCCCCAACTGGAAAAGGCC
25._GC-08-157-3-56
AAAAGGCCCGCCCCAACTGGAAAAGG_
26._SCA_11
__GG__CC____AAAA_CC
27._SCA_11
__GG__CC____AAAA_CC
28._SCA_11
__GG__CC____AAAA_CC
29._SCA_11
__GG__CC____AAAA_CC
30._SCA_11
__GG__CC____AAAA_CC
31._SCA_11
__GG__CC____AAAA_CC
32._SCA_11
__GG__CC____AAAA_CC
33._SCA_11
__GG__CC____AAAA_CC
34._SCA_11
__GG__CC____AAAA_CC
35._SCA_11
__GG__CC____AAAA_CC
36._SCA_11
__GG__CC____AAAA_CC
37._SCA_11
__GG__CC____AAAA_CC
38._SCA_11
__GG__CC____AAAA_CC
39._SCA_11
__GG__CC____AAAA_CC
40._SCA_11
__GG__CC____AAAA_CC
41._SCA_11
__GG__CC____AAAA_CC
42._SCA_11
__GG__CC____AAAA_CC
43._SCA_11
__GG__CC____AAAA_CC
44._SCA_11
__GG__CC____AAAA_CC
45._SCA_11
__GG__CC____AAAA_CC
46._SCA_11
__GG__CC____AAAA_CC
47._SCA_11
__GG__CC____AAAA__
48._SCA_11
__GG__CC____AAAA_CC
49._SCA_11
__GG__CC____AAAA_CC
50._SCA_11
__GG__CC____AAAA_CC
51._SCA_11
__GG__CC____AAAA__
52._RUQ_374
__GG__CC____AAAA_CC
53._SCA_11
__GG__CC____AAAA_CC
54._RUQ_374
____GG____GG_AAGGCC
55._RUQ_1686
_GG__GG_CT__GG_ATCCGG
56._RUQ_1686
AAAAGGGG_CCGGAAAGGGAAAACCGG
57._MITC-000057
ACAAGGGG_CCGGAGGGGGAAAA_GG
58._SCA_11
__AA__GG____TTAT_CG
 2930313233343536373839404142
_Input profile
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
1._GC-01-117-6-14
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
2._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
3._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
4._GC-01-117-6-14
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
5._GC-01-117-6-14
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
6._GC-01-117-6-14
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
7._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
8._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
9._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
10._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
11._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
12._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
13._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
14._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
15._GC-01-117-6-14
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
16._GC-08-157-3-56
TTTTTTGGCGCCAAGGTT_AGCCGGCC
17._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
18._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
19._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
20._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
21._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCC_CC
22._GC-08-157-3-56
TTTTTTGGCG_AAGGTTTTAGCCGGCC
23._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
24._GC-01-117-6-14
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
25._GC-08-157-3-56
TTTTTTGGCGCCAAGGTTTTAGCCGGCC
26._SCA_11
TT___CG_AAGG__AG___
27._SCA_11
TT___CG_AAGG__AG___
28._SCA_11
TT___CG_AAGG__AG___
29._SCA_11
TT___CG_AAGG__AG___
30._SCA_11
TT___CG_AAGG__AG___
31._SCA_11
TT___CG_AAGG__AG___
32._SCA_11
TT___CG_AAGG__AG___
33._SCA_11
TT___CG_AAGG__AG___
34._SCA_11
TT___CG_AAGG__AG___
35._SCA_11
TT___CG_AAGG__AG___
36._SCA_11
TT___CG_AAGG__AG___
37._SCA_11
TT___CG_AAGG__AG___
38._SCA_11
TT___CG_AAGG__AG___
39._SCA_11
TT___CG_AAGG__AG___
40._SCA_11
TT___CG_AAGG__AG___
41._SCA_11
TT___CG_AAGG__AG___
42._SCA_11
TT___CG_AAGG__AG___
43._SCA_11
TT___CG_AAGG__AG___
44._SCA_11
TT___CG_AAGG__AG___
45._SCA_11
TT___CG_AAGG__AG___
46._SCA_11
TT___CG_AAGG__AG___
47._SCA_11
TT___CG_AAGG__AG___
48._SCA_11
TT___CG_AAGG__AG___
49._SCA_11
TT___CG_AAGG__AG___
50._SCA_11
TT___CG_AAGG__AG___
51._SCA_11
TT___CG_AAGG__AG___
52._RUQ_374
TT___CC_AAGG__AG___
53._SCA_11
TT___CC_AAGG__AA___
54._RUQ_374
___AGCCCCAAGG__AACC__
55._RUQ_1686
___GGGG____TT_CC__
56._RUQ_1686
TTAAAAGGCGCCAACCAAAAAGGGGGGG
57._MITC-000057
TTAAAAAGCCCCAACCAAAAAAGGGGGG
58._SCA_11
AA___CC_AATT__AA___
 4344454647484950515253545556
_Input profile
GGTTTTGGAGAACCCCAAAAGGTTTTCC
1._GC-01-117-6-14
GGTTTTGGAGAACCCCAAAAGGTTTTCC
2._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
3._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
4._GC-01-117-6-14
GGTTTTGGAGAACCCCAAAAGGTTTTCC
5._GC-01-117-6-14
GGTTTTGGAGAACCCCAAAAGGTTTTCC
6._GC-01-117-6-14
GGTTTTGGAGAACCCCAAAAGGTTTTCC
7._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
8._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
9._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
10._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
11._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
12._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
13._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
14._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
15._GC-01-117-6-14
GGTTTTGGAGAACCCCAAAAGGTTTTCC
16._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
17._GC-08-157-3-56
GGTTTTGGAG_CCCCAAAAGGTTTTCC
18._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
19._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
20._GC-08-157-3-56
GGTTTTGGAG_CCCCAAAAGGTTTTCC
21._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
22._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
23._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
24._GC-01-117-6-14
GGTTTTGGAGAACCCCAAAAGG_TTCC
25._GC-08-157-3-56
GGTTTTGGAGAACCCCAAAAGGTTTTCC
26._SCA_11
__TT_________TTCC
27._SCA_11
__TT_________TTCC
28._SCA_11
__TT_________TTCC
29._SCA_11
__TT_________TTCC
30._SCA_11
__TT_________TTCC
31._SCA_11
__TT_________TTCC
32._SCA_11
__TT_________TTCC
33._SCA_11
__TT_________TTCC
34._SCA_11
__TT_________TTCC
35._SCA_11
__TT_________TTCC
36._SCA_11
__TT_________TTCC
37._SCA_11
__TT_________TTCC
38._SCA_11
__TT_________TTCC
39._SCA_11
__TT_________TTCC
40._SCA_11
__TT_________TTCC
41._SCA_11
__TT_________TTCC
42._SCA_11
__TT_________TTCC
43._SCA_11
__TT_________TTCC
44._SCA_11
__TT_________TTCC
45._SCA_11
__TT_________TTCC
46._SCA_11
__TT_________TTCC
47._SCA_11
__TT_________TTCC
48._SCA_11
__TT_________TTCC
49._SCA_11
__TT_________TTCC
50._SCA_11
__TT_________TTCC
51._SCA_11
__TT_________TTCC
52._RUQ_374
__TT_________TTCC
53._SCA_11
__TT_________TTCC
54._RUQ_374
GGTT__AA______CCTT_
55._RUQ_1686
_TT_AA________CC_
56._RUQ_1686
CC_AA_AGAAGG_AAAACCAGAAGG
57._MITC-000057
CC_AA_AAAAGG_AAAACCGGAAGG
58._SCA_11
__CC_________CTCT
 5758596061626364656667686970
_Input profile
TTAGCCCCTTCCCGGGAAAAGGGGAACT
1._GC-01-117-6-14
TTAGCCCCTTCCCGGGAAAAGGGGAACT
2._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
3._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
4._GC-01-117-6-14
TTAGCCCCTTCCCGGGAAAAGGGGAACT
5._GC-01-117-6-14
TTAGCCCCTTCCCGGGAAAAGGGGAACT
6._GC-01-117-6-14
TTAGCCCCTTCCCGGGAAAAGGGGAACT
7._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
8._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
9._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
10._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
11._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
12._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
13._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
14._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAA_GGAACT
15._GC-01-117-6-14
TTAGCCCCTTCCCGGGAAAAGGGGAACT
16._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
17._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
18._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
19._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
20._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
21._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
22._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
23._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
24._GC-01-117-6-14
TT_CCCCTTCCCGGGAAAAGGGGAACT
25._GC-08-157-3-56
TTAGCCCCTTCCCGGGAAAAGGGGAACT
26._SCA_11
__CC_TTCCCG_AAAAGGGG__
27._SCA_11
__CC_TTCCCG_AAAAGGGG__
28._SCA_11
__CC_TTCCCG_AAAAGGGG__
29._SCA_11
__CC_TTCCCG_AAAAGGGG__
30._SCA_11
__CC_TTCCCG_AAAAGGGG__
31._SCA_11
__CC_TTCCCG_AAAAGGGG__
32._SCA_11
__CC_TTCCCG_AAAAGGGG__
33._SCA_11
__CC_TTCCCG_AAAAGGGG__
34._SCA_11
__CC_TTCCCG_AAAAGGGG__
35._SCA_11
__CC_TTCCCG_AAAAGGGG__
36._SCA_11
__CC_TTCCCG_AAAAGGGG__
37._SCA_11
__CC_TTCCCG_AAAAGGGG__
38._SCA_11
__CC_TTCCCG_AAAAGGGG__
39._SCA_11
__CC_TTCCCG_AAAAGGGG__
40._SCA_11
__CC_TTCCCG_AAAAGGGG__
41._SCA_11
__CC_TTCCCG_AAAAGGGG__
42._SCA_11
__CC_TTCCCG_AAAAGGGG__
43._SCA_11
__CC_TTCCCG_AAAAGGGG__
44._SCA_11
__CC_TTCCCG_AAAAGGGG__
45._SCA_11
__CC_TTCCCG_AAAAGGGG__
46._SCA_11
__CC_TTCCCG_AAAAGGGG__
47._SCA_11
__CC_TTCCCG_AAAAGGGG__
48._SCA_11
__CC_TTCCCG_AAAAGGGG__
49._SCA_11
__CC_TTCCCG_AAAAGGGG__
50._SCA_11
__CC_TTCCCG_AAAA_GG__
51._SCA_11
__CC_TTCCCG_AAAAGGGG__
52._RUQ_374
__CG_TTCCCG_ACAGGGGG__
53._SCA_11
__CG_TTCCCG_ACAGGGGG__
54._RUQ_374
TT-CGCCTTCC_GGCCAGGGGGAA_
55._RUQ_1686
__CGCC_AA_GGACAG____
56._RUQ_1686
AAAGGGGGAACCCGGGAAAACCCCAA_
57._MITC-000057
AAAGCGGGAACCCGGGACAGCCCCAA_
58._SCA_11
__CC_CTACGG_CCAATTGG__
 7172737475767778798081828384
_Input profile
CCAACTCCGGCCCCAAAACCCCAACCTT
1._GC-01-117-6-14
CCAACTCCGGCCCCAAAACCCCAACCTT
2._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
3._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
4._GC-01-117-6-14
CCAACTCCGGCCCCAAAACCCCAACCTT
5._GC-01-117-6-14
CCAACTCCGGCCCCAAAACCCCAACCTT
6._GC-01-117-6-14
CCAACTCCGGCCCCAAAACCCCAACCTT
7._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
8._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
9._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
10._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
11._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
12._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
13._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
14._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
15._GC-01-117-6-14
CCAACTCCGGCCCCAAAACCCCAACCTT
16._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
17._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
18._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
19._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
20._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
21._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
22._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
23._GC-08-157-3-56
CCAACTCCGGCCCCAAAACCCCAACCTT
24._GC-01-117-6-14
CCAACTCCGGCCCCAAAACCCCAACCTT
25._GC-08-157-3-56
CCAA_CCGGCCCCAAAACCCCAACCTT
26._SCA_11
_AACT_____AACC___TT
27._SCA_11
_AACT_____AACC___TT
28._SCA_11
_AACT_____AACC___TT
29._SCA_11
_AACT_____AACC___TT
30._SCA_11
_AACT_____AACC___TT
31._SCA_11
_AACT_____AACC___TT
32._SCA_11
_AACT_____AACC___TT
33._SCA_11
_AACT_____AACC___TT
34._SCA_11
_AACT_____AACC___TT
35._SCA_11
_AACT_____AACC___TT
36._SCA_11
_AACT_____AACC___TT
37._SCA_11
_AACT_____AACC___TT
38._SCA_11
_AACT_____AACC___TT
39._SCA_11
_AACT_____AACC___TT
40._SCA_11
_AACT_____AACC___TT
41._SCA_11
_AACT_____AACC___TT
42._SCA_11
_AACT_____AACC___TT
43._SCA_11
_AACT_____AACC___TT
44._SCA_11
_AACT_____AACC___TT
45._SCA_11
_AACT_____AACC___TT
46._SCA_11
_AACT_____AACC___TT
47._SCA_11
_AACT_____AACC___TT
48._SCA_11
_AACT_____AACC___TT
49._SCA_11
_AACT_____AACC___TT
50._SCA_11
_AACT_____AACC___TT
51._SCA_11
_AA______AACC___TT
52._RUQ_374
_GGCC_____AACC___TT
53._SCA_11
_GGCC_____AACC___TT
54._RUQ_374
________AACC__CCTT
55._RUQ_1686
CG________GG____
56._RUQ_1686
__AGCCGGCCCC_AAGGGGAACCAA
57._MITC-000057
__GGCCGGCCCC_AAGGGGAACCAA
58._SCA_11
_AATT_____CCGG___CC
 85868788899091929394    
_Input profile
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
1._GC-01-117-6-14
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
2._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
3._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
4._GC-01-117-6-14
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
5._GC-01-117-6-14
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
6._GC-01-117-6-14
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
7._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
8._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
9._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
10._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
11._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
12._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
13._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
14._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
15._GC-01-117-6-14
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
16._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
17._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
18._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
19._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
20._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
21._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
22._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
23._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
24._GC-01-117-6-14
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
25._GC-08-157-3-56
CCCCCCGGCCTTGGCCTTGGX_XX_XX_XX_X
26._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
27._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
28._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
29._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
30._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
31._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
32._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
33._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
34._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
35._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
36._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
37._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
38._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
39._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
40._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
41._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
42._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
43._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
44._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
45._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
46._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
47._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
48._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
49._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
50._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
51._SCA_11
CCCC_GG_TTGGCC__X_XX_XX_XX_X
52._RUQ_374
CCCC_GG_CTGTCT__X_XX_XX_XX_X
53._SCA_11
CCCC_GG_CTGTCT__X_XX_XX_XX_X
54._RUQ_374
___GGCCCTGT___X_XX_XX_XX_X
55._RUQ_1686
CT_________X_XX_XX_XX_X
56._RUQ_1686
GG_GG__AACCGGAAGGX_XX_XX_XX_X
57._MITC-000057
GG_GG__AGACAGAAGGX_XX_XX_XX_X
58._SCA_11
CTTT_AG_CTGGTT__X_XX_XX_XX_X

Input profile: SCA_11 GC-08-157-3-56

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

1._SCA_11 GC-01-117-6-14

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

3._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._SCA_11 GC-01-117-6-14

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP4
 Mars, 2018

5._SCA_11 GC-01-117-6-14

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

6._SCA_11 GC-01-117-6-14

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

7._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

9._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

11._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

12._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 20
Notes: 20
 Mars, 2018

13._SCA_11 GC-08-157-3-56

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 23
Notes: 23
 Mars, 2018

14._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._SCA_11 GC-01-117-6-14

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

16._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

17._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

18._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

19._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 18
Notes: 18
 Mars, 2018

20._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 19
Notes: 19
 Mars, 2018

21._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 24
Notes: 24
 Mars, 2018

22._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 25
Notes: 25
 Mars, 2018

23._SCA_11 GC-08-157-3-56

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 26
Notes: 26
 Mars, 2018

24._SCA_11 GC-01-117-6-14

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

25._SCA_11 GC-08-157-3-56

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

26._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 26
 Dapeng Zhang, 2016

27._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 25
 Dapeng Zhang, 2016

28._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 24
 Dapeng Zhang, 2016

29._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 23
 Dapeng Zhang, 2016

30._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 20
 Dapeng Zhang, 2016

31._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 19
 Dapeng Zhang, 2016

32._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1614 13
 Dapeng Zhang, 2016

33._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1614 1 > FP
 Dapeng Zhang, 2016

34._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1614 10 > F
 Dapeng Zhang, 2016

35._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1614 2 > FP
 Dapeng Zhang, 2016

36._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1614 3 > FP
 Dapeng Zhang, 2016

37._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 1
 Dapeng Zhang, 2016

38._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 3
 Dapeng Zhang, 2016

39._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 5
 Dapeng Zhang, 2016

40._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 6
 Dapeng Zhang, 2016

41._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 8
 Dapeng Zhang, 2016

42._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 9
 Dapeng Zhang, 2016

43._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 10
 Dapeng Zhang, 2016

44._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 11
 Dapeng Zhang, 2016

45._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 14
 Dapeng Zhang, 2016

46._SCA_11

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 4
 Dapeng Zhang, 2016

47._SCA_11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 18
 Dapeng Zhang, 2016

48._SCA_11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 15
 Dapeng Zhang, 2016

49._SCA_11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1614 9
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

50._SCA_11

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 2
 Dapeng Zhang, 2016

51._SCA_11

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8356 13
 Dapeng Zhang, 2016

52._SCA_11 RUQ_374

83.3 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

53._SCA_11

83.3 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 639
 Dapeng Zhang, 2016

54._SCA_11 RUQ_374

82.1 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

55._SCA_11 RUQ_1686

50 %
26 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

56._SCA_11 RUQ_1686

50 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

57._SCA_11 MITC-000057

43 %
79 shared markers

USDA-SHRS, United States of America
 Mars, 2018

58._SCA_11

41 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240