SNP Profiles of EET-94   View Data

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 Key

 1234567891011121314
_Input profile
ATAACTCCAGAACTCTCCCCAGTTCTCT
1._GC-08-147-3-46
ATAACTCCAGAACTCTCCCCAGTTCTCT
2._GC-08-147-3-46
ATAACTCCAGAACTCTCCCCAGTTCTCT
3._GC-08-147-3-46
ATAACTCCAGAACTCTCCCCAGTTCTCT
4._GC-08-147-3-46
ATAACTCCAGAACTCTCCCCAGTTCTCT
5._EET_94_[ECU]
ATAACTCC____CCCCAG_CT_
6._EET_94_[ECU]
ATAACTCC____CCCCAG_CT_
7._EET_94_[ECU]
ATAACTCC____CCCCAG_CT_
8._EET_94_[ECU]
ATAACTCC____CCCCAG_CT_
9._EET_94_[ECU]
ATAACTCC____CCCCAG_CT_
10._EET_94_[ECU]
ATACCTCC____CCCCAG_CT_
 1516171819202122232425262728
_Input profile
ATACAAAGCGCGGGCTAACTGGATATCC
1._GC-08-147-3-46
ATACAAAGCGCGGGCTAACTGGATATCC
2._GC-08-147-3-46
ATACAAAGCGCGGGCTAACTGGATATCC
3._GC-08-147-3-46
ATACAAAGCGCGGGCTAACTGGATATCC
4._GC-08-147-3-46
ATACAAAGCGCGGGCTAACTGGATATCC
5._EET_94_[ECU]
___AG__GG____ATAT_
6._EET_94_[ECU]
___AG__GG____ATAT_
7._EET_94_[ECU]
___AG__GG____ATAT_
8._EET_94_[ECU]
___AG__GG____ATAT_
9._EET_94_[ECU]
___AG__GG____ATAT_
10._EET_94_[ECU]
___AG__GG____ATAT_
 2930313233343536373839404142
_Input profile
GGATTTGTAGCGACAGGTGGTTAGCTAG
1._GC-08-147-3-46
GGATTTGTAGCGACAGGTGGTTAGCTAG
2._GC-08-147-3-46
GGATTTGTAGCGACAGGTGGTTAGCTAG
3._GC-08-147-3-46
GGATTTGTAGCGACAGGTGGTTAGCTAG
4._GC-08-147-3-46
GGATTTGTAGCGACAGGTGGTTAGCTAG
5._EET_94_[ECU]
GGAT___CG_AGGT__AG__
6._EET_94_[ECU]
GGAT___CG_AGGT__AG__
7._EET_94_[ECU]
GGAT___CG_AGGT__AG__
8._EET_94_[ECU]
GGAT___CG_AGGT__AG__
9._EET_94_[ECU]
GGAT___CG_AGGT__AG__
10._EET_94_[ECU]
GGAT___CG_AGGT__AG__
 4344454647484950515253545556
_Input profile
CGGTATCTAAGGAGCTACGGAGCTCTTT
1._GC-08-147-3-46
CGGTATCTAAGGAGCTACGGAGCTCTTT
2._GC-08-147-3-46
CGGTATCTAAGGAGCTACGGAGCTCTTT
3._GC-08-147-3-46
CGGTATCTAAGGAGCTACGGAGCTCTTT
4._GC-08-147-3-46
CGGTATCTAAGGAGCTACGGAGCTCTTT
5._EET_94_[ECU]
___CT_______CTCT_
6._EET_94_[ECU]
___CT_______CTCT_
7._EET_94_[ECU]
___CT_______CTCT_
8._EET_94_[ECU]
___CT_______CTCT_
9._EET_94_[ECU]
___CT_______CTCT_
10._EET_94_[ECU]
___CT_______CTCT_
 5758596061626364656667686970
_Input profile
AGCGCTCTACCGAGCCAAGTGGAGTTCC
1._GC-08-147-3-46
AGCGCTCTACCGAGCCAAGTGGAGTTCC
2._GC-08-147-3-46
AGCGCTCTACCGAGCCAAGTGGAGTTCC
3._GC-08-147-3-46
AGCGCTCTACCGAGCCAAGTGGAGTTCC
4._GC-08-147-3-46
AGCGCTCTACCGAGCCAAGTGGAGTTCC
5._EET_94_[ECU]
_CG_CTACCG_CCAAGTGG___
6._EET_94_[ECU]
_CG_CTACCG_CCAAGTGG___
7._EET_94_[ECU]
_CG_CTACCG_CCAAGTGG___
8._EET_94_[ECU]
_CG_CTACCG_CCAAGTGG___
9._EET_94_[ECU]
_CG_CTACCG_CCAAGTGG___
10._EET_94_[ECU]
_CG_CTACCG_CCAAGTGG___
 7172737475767778798081828384
_Input profile
AGCTACAGACAAAGACCGCCAAACTTTT
1._GC-08-147-3-46
AGCTACAGACAAAGACCGCCAAACTTTT
2._GC-08-147-3-46
AGCTACAGACAAAGACCGCCAAACTTTT
3._GC-08-147-3-46
AGCTACAGACAAAGACCGCCAAACTTTT
4._GC-08-147-3-46
AGCTACAGACAAAGACCGCCAAACTTTT
5._EET_94_[ECU]
AGCT_____ACCG___TTTT
6._EET_94_[ECU]
AGCT_____ACCG___TTTT
7._EET_94_[ECU]
AGCT_____ACCG___TTTT
8._EET_94_[ECU]
AGCT_____ACCG___TTTT
9._EET_94_[ECU]
AGCT_____ACCG___TTTT
10._EET_94_[ECU]
AACT_____ACCG___TTTT
 858687888990919293     
_Input profile
CTTTAGCTCCGTCTAAGGX_XX_XX_XX_XX_X
1._GC-08-147-3-46
CTTTAGCTCCGTCTAAGGX_XX_XX_XX_XX_X
2._GC-08-147-3-46
CTTTAGCTCCGTCTAAGGX_XX_XX_XX_XX_X
3._GC-08-147-3-46
CTTTAGCTCCGTCTAAGGX_XX_XX_XX_XX_X
4._GC-08-147-3-46
CTTTAGCTCCGTCTAAGGX_XX_XX_XX_XX_X
5._EET_94_[ECU]
CT_AG_CCGTCT__X_XX_XX_XX_XX_X
6._EET_94_[ECU]
CT_AG_CCGTCT__X_XX_XX_XX_XX_X
7._EET_94_[ECU]
CT_AG_CCGTCT__X_XX_XX_XX_XX_X
8._EET_94_[ECU]
CT_AG_CCGTCT__X_XX_XX_XX_XX_X
9._EET_94_[ECU]
CT_AG_CCGTCT__X_XX_XX_XX_XX_X
10._EET_94_[ECU]
CT_AG_CCGTCT__X_XX_XX_XX_XX_X

Input profile: EET_94_[ECU] GC-08-147-3-46

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

1._EET_94_[ECU] GC-08-147-3-46

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

2._EET_94_[ECU] GC-08-147-3-46

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

3._EET_94_[ECU] GC-08-147-3-46

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

4._EET_94_[ECU] GC-08-147-3-46

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._EET_94_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8346 9
 Dapeng Zhang, 2016

6._EET_94_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8346 8
 Dapeng Zhang, 2016

7._EET_94_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8346 7
 Dapeng Zhang, 2016

8._EET_94_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8346 6
 Dapeng Zhang, 2016

9._EET_94_[ECU]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8346 3
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._EET_94_[ECU]

97.5 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240