SNP Profiles of CCN-51   View Data

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 Key

 1234567891011121314
_Input profile
AAACCTCCGGAGCCCCCTCCGGTTCCCT
1._GC-07-019-1-21
AAACCTCCGGAGCCCCCTCCGGTTCCCT
2._GC-07-019-1-21
AAACCTCCGGAGCCCCCTCCGGTTCCCT
3._GC-07-019-1-21
AAACCTCCGGAGCCCCCTCCGGTTCCCT
4._GC-06-4-1-04
AAACCTCCGGAGCCCCCTCCGGTTCCCT
5._GC-07-019-1-21
AAACCTCCGGAGCCCCCTCCGGTTCCCT
6._GC-07-019-1-21
AAACCTCCGGAGCCCCCTCCGG_CCCT
7._GC-07-019-1-21
AAACCT_GG__CCCTCCGGTTCCCT
8._CCN_51
AAACCTCC____CTCCGG_CC_
9._CCN_51
AAACCTCC____CTCCGG_CC_
10._CCN_51
AAACCTCC____CTCCGG_CC_
11._CCN_51
AAACCTCC____CTCCGG_CC_
12._CCN_51
AAACCTCC____CTCCGG_CC_
13._CCN_51
AAACCTCC____CTCCGG_CC_
14._CCN_51
AAACCTCC____CTCCGG_CC_
15._CCN_51
AAACCT_____CTCCGG_CC_
16._CCN_51
AAACCTCC____CTCCGG_CC_
17._CCN_51
AAACCTCC____CTCCGG_CC_
18._RUQ_1737
___CC__TT_______
19._GC-07-19-1-21
AAAC_CCGGAG_GGAG_GGAAGGAG
20._RUQ_1736
AAAC_CCGGAG_GGAG_GGAAGGAG
21._MITC-000000
AAAC_CCGGAG_GGAG_GGAAGGAG
22._CCN_51
AAAACCCC____TTTTGG_CC_
 1516171819202122232425262728
_Input profile
AAACAAAGCGCGGGCTAATTAGTTAACC
1._GC-07-019-1-21
AAACAAAGCGCGGGCTAATTAGTTAACC
2._GC-07-019-1-21
AAACAAAGCGCGGGCTAATTAGTTAACC
3._GC-07-019-1-21
AAACAAAGCGCGGGCTAATTAGTTAACC
4._GC-06-4-1-04
AAACAAAGCGCGGGCTAATTAGTTAACC
5._GC-07-019-1-21
AAACAAAGCGCGGGCTAATTAGTTAACC
6._GC-07-019-1-21
AAACAAAGCGCG_CTAATTAGTTAACC
7._GC-07-019-1-21
AAACAA_CGCGGGCTAA_AGTTAACC
8._CCN_51
___AG__GG____TTAA_
9._CCN_51
___AG__GG____TTAA_
10._CCN_51
___AG__GG____TTAA_
11._CCN_51
___AG__GG____TTAA_
12._CCN_51
___AG__GG____TTAA_
13._CCN_51
___AG__GG____TTAA_
14._CCN_51
___AG_______TTAA_
15._CCN_51
______GG____TTAA_
16._CCN_51
___AG__GG____TTAA_
17._CCN_51
___AG__GG____TTAA_
18._RUQ_1737
___AGTT_________
19._GC-07-19-1-21
TTACAGAGCG_GGAGAGAAAGTTAAGG
20._RUQ_1736
TTACAGAGCG_GGAGAGAAAGTTAAGG
21._MITC-000000
TTACAGAGCG_GGAGAGAAAGTTAAGG
22._CCN_51
___AA__GG____AATT_
 2930313233343536373839404142
_Input profile
CCAATTGGAGCCACAATTGGGTAGCCAG
1._GC-07-019-1-21
CCAATTGGAGCCACAATTGGGTAGCCAG
2._GC-07-019-1-21
CCAATTGGAGCCACAATTGGGTAGCCAG
3._GC-07-019-1-21
CCAATTGGAGCCACAATTGGGTAGCCAG
4._GC-06-4-1-04
CCAATTGGAGCCACAATTGGGTAGCCAG
5._GC-07-019-1-21
CCAATTGGAGCCACAATTGGGTAGCCAG
6._GC-07-019-1-21
CCAATTGGAGCCACAATTGGGTAGCCAG
7._GC-07-019-1-21
_AATT_AGCCACAATTGGGTAGCCAG
8._CCN_51
CCAA___CC_AATT__AG__
9._CCN_51
CCAA___CC_AATT__AG__
10._CCN_51
CCAA___CC_AATT__AG__
11._CCN_51
CCAA___CC_AATT__AG__
12._CCN_51
CCAA___CC_AATT__AG__
13._CCN_51
CCAA___CC_AATT__AG__
14._CCN_51
CCAA___CC_AATT__AG__
15._CCN_51
_AA___CC_AATT__AG__
16._CCN_51
CCAA___CC_AATT__AG__
17._CCN_51
CCAA___CC_AATT__AG__
18._RUQ_1737
CC____CC_AA____CC_
19._GC-07-19-1-21
GGAAAACCAGCCACAAAACCACAGGGAG
20._RUQ_1736
GGAAAACCAGCCACAAAACCACAGGGAG
21._MITC-000000
GGAAAACCAGCCACAAAACCACAGGGAG
22._CCN_51
CCAA___CC_AAGG__GG__
 4344454647484950515253545556
_Input profile
CCGTATCTGGAGAGCTCCGGAGGTTTCC
1._GC-07-019-1-21
CCGTATCTGGAGAGCTCCGGAGGTTTCC
2._GC-07-019-1-21
CCGTATCTGGAGAGCTCCGGAGGTTTCC
3._GC-07-019-1-21
CCGTATCTGGAGAGCTCCGGAGGTTTCC
4._GC-06-4-1-04
CCGTATCTGGAGAGCTCCGGAGGTTTCC
5._GC-07-019-1-21
CCGTATCTGGAGAGCTCCGGAGGTTTCC
6._GC-07-019-1-21
CCGTATCTGGAGAGCTCCGGAGGTTTCC
7._GC-07-019-1-21
CCGTATCTGGAGAGCTCCGGAGGTTTCC
8._CCN_51
___CT_________CC
9._CCN_51
___CT_________CC
10._CCN_51
___CT_________CC
11._CCN_51
___CT_________CC
12._CCN_51
___CT_________CC
13._CCN_51
___CT_________CC
14._CCN_51
___CT_________CC
15._CCN_51
___CT_________CC
16._CCN_51
___CT_________CC
17._CCN_51
___CT_________CC
18._RUQ_1737
_____AG________
19._GC-07-19-1-21
GGAC_AG_AGAAAG_GGAGACAAGG
20._RUQ_1736
GGAC_AG_AGAAAG_GGAGACAAGG
21._MITC-000000
GGAC_AG_AGAAAG_GGAGACAAGG
22._CCN_51
___CC_________TT
 5758596061626364656667686970
_Input profile
CTGTAGCGCTTTAAGGAGACAATTGGGG
1._GC-07-019-1-21
CTGTAGCGCTTTAAGGAGACAATTGGGG
2._GC-07-019-1-21
CTGTAGCGCTTTAAGGAGACAATTGGGG
3._GC-07-019-1-21
CTGTAGCGCTTTAAGGAGACAATTGGGG
4._GC-06-4-1-04
CTGTAG_CTTTAAGGAGACAATTGGGG
5._GC-07-019-1-21
CTGTAGCGCTTTAAGGAGACAATTGGGG
6._GC-07-019-1-21
CTGTAGCGCTTTAAGGAGACAATTGGGG
7._GC-07-019-1-21
CTGTAGCGCTTTAAGGAGACAATTGGGG
8._CCN_51
CT__CG_TTAAGG_ACAATTGG_
9._CCN_51
CT__CG_TTAAGG_ACAATTGG_
10._CCN_51
CT__CG_TTAAGG_ACAATTGG_
11._CCN_51
CT__CG_TTAAGG_ACAATTGG_
12._CCN_51
CT__CG_TTAAGG_ACAATTGG_
13._CCN_51
CT__CG_TTAAGG_ACAATTGG_
14._CCN_51
CT__CG_TTAAGG_ACAATTGG_
15._CCN_51
CT__CG_TTAAGG_ACAATTGG_
16._CCN_51
CT__CG_TTAAGG_ACAATTGG_
17._CCN_51
CT__CG_TTAAGG_ACAATTGG_
18._RUQ_1737
__AG______ACAA_GGGG
19._GC-07-19-1-21
AGACAGCGAGAAAAGGAGACAAAACCGG
20._RUQ_1736
AGACAGCGAGAAAAGGAGACAAAACCGG
21._MITC-000000
AGACAGCGAGAAAAGGAGACAAAACCGG
22._CCN_51
CC__GG_TTCCGG_AAGGGGTT_
 7172737475767778798081828384
_Input profile
TTCGAGCTACAGCCAAAGACGGCTAACC
1._GC-07-019-1-21
TTCGAGCTACAGCCAAAGACGGCTAACC
2._GC-07-019-1-21
TTCGAGCTACAGCCAAAGACGGCTAACC
3._GC-07-019-1-21
TTCGAGCTACAGCCAAAGACGGCTAACC
4._GC-06-4-1-04
TTCGAGCTACAGCCAAAGACGGCTAACC
5._GC-07-019-1-21
_CGAGCTACAGCCAA_ACGGCT_CC
6._GC-07-019-1-21
TTCGAGCTACAGCCAA_ACGGCT_CC
7._GC-07-019-1-21
TTCGAGCTACAGCCAAAGACGGCTAACC
8._CCN_51
__AGCT_____ACGG___
9._CCN_51
__AGCT_____ACGG___
10._CCN_51
__AGCT_____ACGG___
11._CCN_51
__AGCT_____ACGG___
12._CCN_51
__AGCT_____ACGG___
13._CCN_51
__AGCT_____ACGG___
14._CCN_51
__AGCT_____ACGG___
15._CCN_51
__AGCT_____ACGG___
16._CCN_51
__AGCT_____ACGG___
17._CCN_51
__AGCT_____ACGG___
18._RUQ_1737
__AG______AAGG__CC
19._GC-07-19-1-21
___AGACAGCCAA_ACCCAGAACC
20._RUQ_1736
___AGACAGCCAA_ACCCAGAACC
21._MITC-000000
___AGACAGCCAA_ACCCAGAACC
22._CCN_51
__GGTT_____CCCC___
 8586878889909192939495   
_Input profile
CTTTCTTTAGCCCTTTTTATGGX_XX_XX_X
1._GC-07-019-1-21
CTTTCTTTAGCCCTTTTTATGGX_XX_XX_X
2._GC-07-019-1-21
CTTTCTTTAGCCCTTTTTATGGX_XX_XX_X
3._GC-07-019-1-21
CTTTCT_AGCCCTTTTTATGGX_XX_XX_X
4._GC-06-4-1-04
CTTTCTTTAGCCCTTTTT__X_XX_XX_X
5._GC-07-019-1-21
CTTTCTTTAGCCCTTTTT__X_XX_XX_X
6._GC-07-019-1-21
CTTTCTTTAGCCCTTTTT__X_XX_XX_X
7._GC-07-019-1-21
CTTTCTTTAGCCCTTTTT__X_XX_XX_X
8._CCN_51
CTTTCT_AG_CTTTTT__X_XX_XX_X
9._CCN_51
CTTTCT_AG_CTTTTT__X_XX_XX_X
10._CCN_51
CTTTCT_AG_CTTTTT__X_XX_XX_X
11._CCN_51
CTTTCT_AG_CTTTTT__X_XX_XX_X
12._CCN_51
CTTTCT_AG_CTTTTT__X_XX_XX_X
13._CCN_51
CTTTCT_AG_CTTTTT__X_XX_XX_X
14._CCN_51
CTTTCT_AG_CTTTTT__X_XX_XX_X
15._CCN_51
CTTTCT_AG_CTTTTT__X_XX_XX_X
16._CCN_51
CTCTCT_AG_CTTTTT__X_XX_XX_X
17._CCN_51
CTCTCT_AG_CTTTTT__X_XX_XX_X
18._RUQ_1737
__CT__CC_TT___X_XX_XX_X
19._GC-07-19-1-21
AGAA_AA__AGAAAAATGGX_XX_XX_X
20._RUQ_1736
AGAA_AA__AGAAAAATGGX_XX_XX_X
21._MITC-000000
AGAA_AA__AGAAAAATGGX_XX_XX_X
22._CCN_51
CCCCCC_GG_TTGGTT__X_XX_XX_X

Input profile: CCN_51 GC-07-019-1-21

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

1._CCN_51 GC-07-019-1-21

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

2._CCN_51 GC-07-019-1-21

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

3._CCN_51 GC-07-019-1-21

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

4._CCN_51 GC-06-4-1-04

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 6, Block: 1, Rep: 4, Tree: PL7
Notes: PL7 FP
 Mars, 2018

5._CCN_51 GC-07-019-1-21

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: PL3
Notes: PL3 FP1
 Mars, 2018

6._CCN_51 GC-07-019-1-21

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: PL4
Notes: PL4 FP2
 Mars, 2018

7._CCN_51 GC-07-019-1-21

identical
86 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: PL6
Notes: PL6 FP4
 Mars, 2018

8._CCN_51

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 3 > FP
 Dapeng Zhang, 2016

9._CCN_51

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 14
 Dapeng Zhang, 2016

10._CCN_51

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 13
 Dapeng Zhang, 2016

11._CCN_51

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 12
 Dapeng Zhang, 2016

12._CCN_51

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 10
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

13._CCN_51

identical
40 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
 Dapeng Zhang, 2016
Population Assignment: 

14._CCN_51

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 4 > FP
 Dapeng Zhang, 2016

15._CCN_51

identical
37 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 6 > FP
 Dapeng Zhang, 2016

16._CCN_51

98.8 %
40 shared markers

 Dapeng Zhang, 2016

17._CCN_51

98.8 %
40 shared markers

 Dapeng Zhang, 2016

18._CCN_51 RUQ_1737

88.1 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

19._CCN_51 GC-07-19-1-21

51.2 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: 3 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

20._CCN_51 RUQ_1736

51.2 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

21._CCN_51 MITC-000000

51.2 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

22._CCN_51

50 %
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240