SNP Profiles of PA-195   View Data

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 Key

 1234567891011121314
_Input profile
AACCCCCCGGAGCTCCCCCCGGTTCCTT
1._GC-05-166-4-19
AACCCCCCGGAGCTCCCCCCGGTTCCTT
2._GC-05-166-4-19
AACCCCCCGGAGCTCCCCCCGGTTCCTT
3._GC-05-166-4-19
AACCCCCCGGAGCTCCCCCCGGTTCCTT
4._PA_195_[PER]
AACCCCCC____CCCCGG_CC_
5._PA_195_[PER]
AACCCCCC____CCCCGG_CC_
6._PA_195_[PER]
AACCCCCC____CCCCGG_CC_
7._PA_195_[PER]
AACCCCCC____CCCCGG_CC_
8._RUQ_1642
__CCCC__CT_CC__TTCC_
9._RUQ_1642
__CCCC__CT_CC__TTCC_
10._RUQ_1642
AACCCCCC____CCCCGG_CC_
11._RUQ_1642
AACCCCCC____CCCCGG_CC_
12._PA_195_[PER]
AACCCCCC____CCCCGG_CC_
13._GC-05-166-4-19
AACC_CCGGAG_GGGG_GGAAGGAA
14._RUQ_1642
AACC_CCGGAG_GGGG_GGAAGGAA
 1516171819202122232425262728
_Input profile
AACCAAAGCCCCCGTTAATTGGATAACC
1._GC-05-166-4-19
AACCAAAGCCCCCGTTAATTGGATAACC
2._GC-05-166-4-19
AACCAAAGCCCCCGTTAATTGGATAACC
3._GC-05-166-4-19
AACCAAAGCCCCCGTTAATTGGATAACC
4._PA_195_[PER]
___AG__CG____ATAA_
5._PA_195_[PER]
___AG__CG____ATAA_
6._PA_195_[PER]
___AG__CG____ATAA_
7._PA_195_[PER]
___AG__CG____ATAA_
8._RUQ_1642
_____CC____GG_AACC
9._RUQ_1642
_____CC____GG_AACC
10._RUQ_1642
___AG__CG____ATAA_
11._RUQ_1642
___AG__CG____ATAA_
12._PA_195_[PER]
___AG__CG____ATAA_
13._GC-05-166-4-19
TTCCAGAGGG_CGAAAGAAGGATAAGG
14._RUQ_1642
TTCCAGAGGG_CGAAAGAAGGATAAGG
 2930313233343536373839404142
_Input profile
GGAATTGTGGCGCCAGGGGGGGGGTTGG
1._GC-05-166-4-19
GGAATTGTGGCGCCAGGGGGGGGGTTGG
2._GC-05-166-4-19
GGAATTGTGGCGCCAGGGGGGGGGTTGG
3._GC-05-166-4-19
GGAATTGTGGCGCCAGGGGGGGGGTTGG
4._PA_195_[PER]
GGAA___CG_AGGG__GG__
5._PA_195_[PER]
GGAA___CG_AGGG__GG__
6._PA_195_[PER]
GGAA___CG_AGGG__GG__
7._PA_195_[PER]
GGAA___CG_AGGG__GG__
8._RUQ_1642
GG___GGCGCCAGGG__GGTT_
9._RUQ_1642
GG___GGCGCCAGGG__GGTT_
10._RUQ_1642
GGAA___CG_AGGG__GG__
11._RUQ_1642
GGAA___CG_AGGG__GG__
12._PA_195_[PER]
GGAA___CG_AGGG__GG__
13._GC-05-166-4-19
CCAAAAACGGCGCCAGCCCCCCGGAAGG
14._RUQ_1642
CCAAAAACGGCGCCAGCCCCCCGGAAGG
 4344454647484950515253545556
_Input profile
CCGGTTCCAAGGAACCCCGGAGGGTTCC
1._GC-05-166-4-19
CCGGTTCCAAGGAACCCCGGAGGGTTCC
2._GC-05-166-4-19
CCGGTTCCAAGGAACCCCGGAGGGTTCC
3._GC-05-166-4-19
CCGGTTCCAAGGAACCCCGGAGGGTTCC
4._PA_195_[PER]
___CC_________CC
5._PA_195_[PER]
___CC_________CC
6._PA_195_[PER]
___CC_________CC
7._PA_195_[PER]
___CC_________CC
8._RUQ_1642
_GGTT__GG______TTCC
9._RUQ_1642
_GGTT__GG______TTCC
10._RUQ_1642
___CC_________CC
11._RUQ_1642
___CC_________CC
12._PA_195_[PER]
___CC_________CC
13._GC-05-166-4-19
GGCC_GG_GGAAGG_GGAGCCAAGG
14._RUQ_1642
GGCC_GG_GGAAGG_GGAGCCAAGG
 5758596061626364656667686970
_Input profile
CCTTGGCCCCCCCCGGGGACGGGGGGAG
1._GC-05-166-4-19
CCTTGGCCCCCCCCGGGGACGGGGGGAG
2._GC-05-166-4-19
CCTTGGCCCCCCCCGGGGACGGGGGGAG
3._GC-05-166-4-19
CCTTGGCCCCCCCCGGGGACGGGGGGAG
4._PA_195_[PER]
CC__CC_CCCCGG_ACGGGGGG_
5._PA_195_[PER]
CC__CC_CCCCGG_ACGGGGGG_
6._PA_195_[PER]
CC__CC_CCCCGG_ACGGGGGG_
7._PA_195_[PER]
CC__CC_CCCCGG_ACGGGGGG_
8._RUQ_1642
_TT-CCCCCCCC_GGACGGGGGGAG
9._RUQ_1642
_TT-CCCCCCCC_GGACGGGGGGAG
10._RUQ_1642
CC__CC_CCCCGG_ACGGGGGG_
11._RUQ_1642
CC__CC_CCCCGG_ACGGGGGG_
12._PA_195_[PER]
CC____CCCCGG_ACGGGGGG_
13._GC-05-166-4-19
GGAAGGGGGGGGCCGGGGACGGCCCCAG
14._RUQ_1642
GGAAGGGGGGGGCCGGGGACGGCCCCAG
 7172737475767778798081828384
_Input profile
CTCCAGCCCCAAACAAAAAACGCCTTAA
1._GC-05-166-4-19
CTCCAGCCCCAAACAAAAAACGCCTTAA
2._GC-05-166-4-19
CTCCAGCCCCAAACAAAAAACGCCTTAA
3._GC-05-166-4-19
CTCCAGCCCCAAACAAAAAACGCCTTAA
4._PA_195_[PER]
__AGCC_____AACG___
5._PA_195_[PER]
__AGCC_____AACG___
6._PA_195_[PER]
__AGCC_____AACG___
7._PA_195_[PER]
__AGCC_____AACG___
8._RUQ_1642
_________AACG__AA
9._RUQ_1642
_________AACG__AA
10._RUQ_1642
__AACC_____AACG___
11._RUQ_1642
__AACC_____AACG___
12._PA_195_[PER]
__AACC_____AACG___
13._GC-05-166-4-19
___GGCCAAACAA_AACGGGTTAA
14._RUQ_1642
___GGCCAAACAA_AACGGGTTAA
 8586878889909192939495   
_Input profile
TTCCCCCCAACTCCTTTTAAGGX_XX_XX_X
1._GC-05-166-4-19
TTCCCCCCAACTCCTTTTAAGGX_XX_XX_X
2._GC-05-166-4-19
TTCCCCCCAACTCCTTTTAAGGX_XX_XX_X
3._GC-05-166-4-19
TTCCCCCCAACTCCTTTTAAGGX_XX_XX_X
4._PA_195_[PER]
TTCCCC_AA_CCTTTT__X_XX_XX_X
5._PA_195_[PER]
TTCCCC_AA_CCTTTT__X_XX_XX_X
6._PA_195_[PER]
TTCCCC_AA_CCTTTT__X_XX_XX_X
7._PA_195_[PER]
TTCCCC_AA_CCTTTT__X_XX_XX_X
8._RUQ_1642
TT___AACCCCTT___X_XX_XX_X
9._RUQ_1642
TT___AACCCCTT___X_XX_XX_X
10._RUQ_1642
TTCCCC_AA_CCTTTT__X_XX_XX_X
11._RUQ_1642
TTCCCC_AA_CCTTTT__X_XX_XX_X
12._PA_195_[PER]
TTCC__AA_CCTTTT__X_XX_XX_X
13._GC-05-166-4-19
AAGG_GG__GGAAAATTGGX_XX_XX_X
14._RUQ_1642
AAGG_GG__GGAAAATTGGX_XX_XX_X

Input profile: PA_195_[PER] GC-05-166-4-19

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

1._PA_195_[PER] GC-05-166-4-19

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._PA_195_[PER] GC-05-166-4-19

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

3._PA_195_[PER] GC-05-166-4-19

identical
95 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._PA_195_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5419 4
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

5._PA_195_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5419 1 > FP
 Dapeng Zhang, 2016

6._PA_195_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5419 2 > FP
 Dapeng Zhang, 2016

7._PA_195_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5419 5 > FP
 Dapeng Zhang, 2016

8._PA_195_[PER] RUQ_1642

98.8 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

9._PA_195_[PER] RUQ_1642

98.8 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._PA_195_[PER] RUQ_1642

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

11._PA_195_[PER] RUQ_1642

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._PA_195_[PER]

98.7 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B C165 T1
 Dapeng Zhang, 2016

13._PA_195_[PER] GC-05-166-4-19

49.4 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 4, Rep: 19, Tree: 4
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

14._PA_195_[PER] RUQ_1642

49.4 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240