SNP Profiles of SPEC-54/1   View Data

 Show/Hide Profiles

 Key

 1234567891011121314
_Input profile
AACCTTAAGGGGCCCCCCCCGGTTCCTT
1._GC-05-162-4-15
AA_TTAAGGGGCCCCCCCCGGTTCCTT
2._GC-05-063-2-14
AA_TTAAGGGGCCCCCCCCGGTTCCTT
3._GC-05-162-4-15
AA_TTAAGGGGCCCCCCCCGGTTCCTT
4._GC-05-162-4-15
AA_TTAAGGGGCCCCCCCCGGTTCCTT
5._GC-05-063-2-14
AA_TTAAGGGGCCCCCCCCGGTTCCTT
6._GC-05-162-4-15
AA_TTAAGGGGCCCCCCCCGGTTCCTT
7._GC-05-063-2-14
AA_TTAAGGGGCCCCCCCCGGTTCCTT
8._GC-05-063-2-14
AA__AAGGGGCCCCCCCCGGTTCCTT
9._SPEC_54_/1
AACCTTAA____CCCCGG_CC_
10._SPEC_54_/1
AA_TTAA____CCCCGG_CC_
11._SPEC_54_/1
AA_TTAA____CCCCGG_CC_
12._SPEC_54_/1
AA_TTAA____CCCCGG_CC_
13._SPEC_54_/1
AA_TTAA____CCCCGG_CC_
14._SPEC_54_/1
AA_TTAA____CCCCGG_CC_
15._SPEC_54_/1
AA_TTAA____CCCCGG_CC_
16._SPEC_54_/1
AA_TTAA____CCCCGG_CC_
17._SPEC_54_/1
AA__AA____CCCCGG_CC_
18._GC-05-063-2-14
AA_TTAAGGGGCCCCCCCCGGTTCCTT
19._SPEC_54_/1
AA_TTAA____CCCCGG_CC_
20._RUQ_50
__TTAA__TT_CC__TTCC_
21._RUQ_50
AACCTTAA____CCCCGG_CC_
22._RUQ_50
___AA__TT_______
 1516171819202122232425262728
_Input profile
AACCGGGGCCGGTTAATTGGTTAACCGG
1._GC-05-162-4-15
AACCGGGGCCGGTTAATTGGTTAACCGG
2._GC-05-063-2-14
AACCGGGGCCGGTTAATTGGTTAACCGG
3._GC-05-162-4-15
AACCGGGGCCGGTTAATTGGTTAACCGG
4._GC-05-162-4-15
AACCGGGGCCGGTTAATTGGTTAACCGG
5._GC-05-063-2-14
AACCGGGGCCGGTTAATTGGTTAACCGG
6._GC-05-162-4-15
AACCGGGGCCGGTTAATTGGTTAACCGG
7._GC-05-063-2-14
AACCGGGGCCGGTTAATTGGTTAACCGG
8._GC-05-063-2-14
AACCGGGGCCGGTTAATTGGTTAACCGG
9._SPEC_54_/1
__GG__GG____TTAA_GG
10._SPEC_54_/1
__GG__GG____TTAA_GG
11._SPEC_54_/1
__GG__GG____TTAA_GG
12._SPEC_54_/1
__GG__GG____TTAA_GG
13._SPEC_54_/1
__GG__GG____TTAA_GG
14._SPEC_54_/1
__GG__GG____TTAA_GG
15._SPEC_54_/1
__GG__GG____TTAA_GG
16._SPEC_54_/1
__GG__GG____TTAA_GG
17._SPEC_54_/1
__GG__GG____TTAA_GG
18._GC-05-063-2-14
AACCGGGGCCGGTTAATTGGTTAACCGG
19._SPEC_54_/1
__GG__GG____TTAA_GG
20._RUQ_50
____CC____GG_AACCGG
21._RUQ_50
__GG__GG____TTAA_GG
22._RUQ_50
__GGTT_________GG
 2930313233343536373839404142
_Input profile
AATTGGAAGGCCAATTGGTTAACCAACC
1._GC-05-162-4-15
AATTGGAAGGCCAATTGGTTAACCAACC
2._GC-05-063-2-14
AATTGGAAGGCCAATTGGTTAACCAACC
3._GC-05-162-4-15
AATTGGAAGGCCAATTGGTTAACCAACC
4._GC-05-162-4-15
AATTGGAAGGCCAATTGGTTAACCAACC
5._GC-05-063-2-14
AATTGGAAGGCCAATTGGTTAACCAACC
6._GC-05-162-4-15
AATTGGAAGGCCAATTGGTTAACCAACC
7._GC-05-063-2-14
AATTGGAAGGCCAATTGGTTAACCAACC
8._GC-05-063-2-14
AATTGGAAGGCCAATTGGTTAACCAACC
9._SPEC_54_/1
AA___GG_AATT__AA___
10._SPEC_54_/1
AA___GG_AATT__AA___
11._SPEC_54_/1
AA___GG_AATT__AA___
12._SPEC_54_/1
AA___GG_AATT__AA___
13._SPEC_54_/1
AA___GG_AATT__AA___
14._SPEC_54_/1
AA___GG_AATT__AA___
15._SPEC_54_/1
AA___GG_AATT__AA___
16._SPEC_54_/1
AA___GG_AATT__AA___
17._SPEC_54_/1
AA___GG_AATT__AA___
18._GC-05-063-2-14
AATTGGAAGGCCAATTGGTTAACCAACC
19._SPEC_54_/1
AA___GG_AATT__AA___
20._RUQ_50
___AAGGCCAATT__AACC__
21._RUQ_50
AA___GG_AAGT__AG___
22._RUQ_50
____GG_AA____CC__
 4344454647484950515253545556
_Input profile
GGTTTTAAGGAACCCCGGAATTTTCCCC
1._GC-05-162-4-15
GGTTTTAAGGAACCCCGGAATTTTCCCC
2._GC-05-063-2-14
GGTTTTAAGGAACCCCGGAATTTTCCCC
3._GC-05-162-4-15
GGTTTTAAGGAACCCCGGAATTTTCCCC
4._GC-05-162-4-15
GGTTTTAAGGAACCCCGGAATTTTCCCC
5._GC-05-063-2-14
GGTTTTAAGGAACCCCGGAATTTTCCCC
6._GC-05-162-4-15
GGTTTTAAGGAACCCCGGAATTTTCCCC
7._GC-05-063-2-14
GGTTTTAAGGAACCCCGGAATTTTCCCC
8._GC-05-063-2-14
GG_TTAAGGAACCCCGGAATTTTCCCC
9._SPEC_54_/1
__TT_________CCCC
10._SPEC_54_/1
__TT_________CCCC
11._SPEC_54_/1
__TT_________CCCC
12._SPEC_54_/1
__TT_________CCCC
13._SPEC_54_/1
__TT_________CCCC
14._SPEC_54_/1
__TT_________CCCC
15._SPEC_54_/1
__TT_________CCCC
16._SPEC_54_/1
__TT_________CCCC
17._SPEC_54_/1
__TT_________CCCC
18._GC-05-063-2-14
GGTTTTAAGGAACCCCGGAATTTTCTCC
19._SPEC_54_/1
__TT_________CTCC
20._RUQ_50
GGTT__GG______TTCC_
21._RUQ_50
__TT_________CCCC
22._RUQ_50
____GG_________
 5758596061626364656667686970
_Input profile
TTGGCCTTCTAAGGGGAAAATTGGGGTT
1._GC-05-162-4-15
TTGGCCTTCTAAGGGGAAAATTGGGGTT
2._GC-05-063-2-14
TTGGCCTTCTAAGGGGAAAATTGGGGTT
3._GC-05-162-4-15
TTGGCCTTCTAAGGGGAAAATTGGGGTT
4._GC-05-162-4-15
TTGGCCTTCTAAGGGGAAAATTGGGGTT
5._GC-05-063-2-14
TTGGCCTTCTAAGGGGAAAATTGGGGTT
6._GC-05-162-4-15
TT_CCTTCTAAGGGGAAAATTGGGGTT
7._GC-05-063-2-14
TT_CCTTCTAAGGGGAAAATTGGGGTT
8._GC-05-063-2-14
TTGGCCTTCTAAGGGGAAAATTGGGGTT
9._SPEC_54_/1
__CC_CTAAGG_AAAATTGG__
10._SPEC_54_/1
__CC_CTAAGG_AAAATTGG__
11._SPEC_54_/1
__CC_CTAAGG_AAAATTGG__
12._SPEC_54_/1
__CC_CTAAGG_AAAATTGG__
13._SPEC_54_/1
__CC_CTAAGG_AAAATTGG__
14._SPEC_54_/1
__CC_CTAAGG_AAAATTGG__
15._SPEC_54_/1
__CC_CTAAGG_AAAATTGG__
16._SPEC_54_/1
__CC_CTAAGG_AAAATTGG__
17._SPEC_54_/1
__CC_CTAAGG_AAAATTGG__
18._GC-05-063-2-14
TTGGCCTTCTAAGGGGAAAATTGGGGTT
19._SPEC_54_/1
__CC_CTAAGG_AAAATTGG__
20._RUQ_50
TTGGCCTTCTAA_GGAAAATTGGGG_
21._RUQ_50
__CC_CTAAGG_AAAATTGG__
22._RUQ_50
_GG______AAAA_GGGG_
 7172737475767778798081828384
_Input profile
CCAATTAAAAAAAAAACCCCCCAAAACC
1._GC-05-162-4-15
CCAATTAAAAAAAAAACCCCCCAAAACC
2._GC-05-063-2-14
CCAATTAAAAAAAAAACCCCCCAAAACC
3._GC-05-162-4-15
CCAATTAAAAAAAAAACCCCCCAAAACC
4._GC-05-162-4-15
CCAATTAAAAAAAAAACCCCCCAAAACC
5._GC-05-063-2-14
CCAATT_AAAAAAAACCCCCCAAAACC
6._GC-05-162-4-15
CCAATTAAAAAAAAAACCCCCCAAAACC
7._GC-05-063-2-14
CCAATT_AAAAAAAACCCCCCAAAACC
8._GC-05-063-2-14
CCAATTAAAAAAAAAACCCCCCAAAACC
9._SPEC_54_/1
_AATT_____CCCC___CC
10._SPEC_54_/1
_AATT_____CCCC___CC
11._SPEC_54_/1
_AATT_____CCCC___CC
12._SPEC_54_/1
_AATT_____CCCC___CC
13._SPEC_54_/1
_AATT_____CCCC___CC
14._SPEC_54_/1
_AATT_____CCCC___CC
15._SPEC_54_/1
_AATT_____CCCC___CC
16._SPEC_54_/1
_AATT_____CCCC___CC
17._SPEC_54_/1
_AATT_____CCCC___CC
18._GC-05-063-2-14
CCAATTAAAAAAAAAACCCCCCAAAACC
19._SPEC_54_/1
_AATT_____CCCC___CC
20._RUQ_50
________CCCC__AACC
21._RUQ_50
_AATT_____CCCC___CC
22._RUQ_50
_AA______ACCC__AA_
 85868788899091929394    
_Input profile
CCTTTTAACCTTTTTTAAGGX_XX_XX_XX_X
1._GC-05-162-4-15
CCTTTTAACCTTTTTTAAGGX_XX_XX_XX_X
2._GC-05-063-2-14
CCTTTTAACCTTTTTTAAGGX_XX_XX_XX_X
3._GC-05-162-4-15
CCTTTTAACCTTTTTTAAGGX_XX_XX_XX_X
4._GC-05-162-4-15
CCTTTTAACCTTTTTTAAGGX_XX_XX_XX_X
5._GC-05-063-2-14
CCTTTTAACCTTTTTTAAGGX_XX_XX_XX_X
6._GC-05-162-4-15
CCTTTTAACCTTTTTTAAGGX_XX_XX_XX_X
7._GC-05-063-2-14
CCTTTTAACCTTTTTTAAGGX_XX_XX_XX_X
8._GC-05-063-2-14
CCTTTTAACCTTTTTTAAGGX_XX_XX_XX_X
9._SPEC_54_/1
CCTT_AA_TTTTTT__X_XX_XX_XX_X
10._SPEC_54_/1
CCTT_AA_TTTTTT__X_XX_XX_XX_X
11._SPEC_54_/1
CCTT_AA_TTTTTT__X_XX_XX_XX_X
12._SPEC_54_/1
CCTT_AA_TTTTTT__X_XX_XX_XX_X
13._SPEC_54_/1
CCTT_AA_TTTTTT__X_XX_XX_XX_X
14._SPEC_54_/1
CCTT_AA_TTTTTT__X_XX_XX_XX_X
15._SPEC_54_/1
CCTT_AA_TTTTTT__X_XX_XX_XX_X
16._SPEC_54_/1
CCTT_AA_TTTTTT__X_XX_XX_XX_X
17._SPEC_54_/1
CCTT_AA_TTTTTT__X_XX_XX_XX_X
18._GC-05-063-2-14
CCTTTTAACCTTTTTTAAGGX_XX_XX_XX_X
19._SPEC_54_/1
CCTT_AA_TTTTTT__X_XX_XX_XX_X
20._RUQ_50
___AACCTTTT___X_XX_XX_XX_X
21._RUQ_50
CCTT_AA_TTTTTT__X_XX_XX_XX_X
22._RUQ_50
_TT__CC_TT___X_XX_XX_XX_X

Input profile: SPEC_54_/1 GC-05-162-4-15

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

1._SPEC_54_/1 GC-05-162-4-15

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

2._SPEC_54_/1 GC-05-063-2-14

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

3._SPEC_54_/1 GC-05-162-4-15

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._SPEC_54_/1 GC-05-162-4-15

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._SPEC_54_/1 GC-05-063-2-14

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

6._SPEC_54_/1 GC-05-162-4-15

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._SPEC_54_/1 GC-05-063-2-14

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

8._SPEC_54_/1 GC-05-063-2-14

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

9._SPEC_54_/1

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5415 5
 Dapeng Zhang, 2016

10._SPEC_54_/1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5415 3
 Dapeng Zhang, 2016

11._SPEC_54_/1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5415 1 > FP
 Dapeng Zhang, 2016

12._SPEC_54_/1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5415 4
 Dapeng Zhang, 2016

13._SPEC_54_/1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5415 2
 Dapeng Zhang, 2016

14._SPEC_54_/1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5214 4 > FP
 Dapeng Zhang, 2016

15._SPEC_54_/1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5214 3 > FP
 Dapeng Zhang, 2016

16._SPEC_54_/1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5214 2 > FP
 Dapeng Zhang, 2016

17._SPEC_54_/1

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5214 1 > FP
 Dapeng Zhang, 2016

18._SPEC_54_/1 GC-05-063-2-14

99.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._SPEC_54_/1

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5214 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

20._SPEC_54_/1 RUQ_50

97.7 %
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._SPEC_54_/1 RUQ_50

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._SPEC_54_/1 RUQ_50

88.1 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240