SNP Profiles of SPEC-54/1   View Data

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 1234567891011121314
_Input profile
AATTAAGGGGCCCCCCCCGGTTCCTTAA
1._GC-05-162-4-15
AATTAAGGGGCCCCCCCCGGTTCCTTAA
2._GC-05-063-2-14
AATTAAGGGGCCCCCCCCGGTTCCTTAA
3._GC-05-162-4-15
AATTAAGGGGCCCCCCCCGGTTCCTTAA
4._GC-05-162-4-15
AATTAAGGGGCCCCCCCCGGTTCCTTAA
5._GC-05-063-2-14
AATTAAGGGGCCCCCCCCGGTTCCTTAA
6._GC-05-162-4-15
AATTAAGGGGCCCCCCCCGGTTCCTTAA
7._GC-05-063-2-14
AATTAAGGGGCCCCCCCCGGTTCCTTAA
8._GC-05-063-2-14
AA_AAGGGGCCCCCCCCGGTTCCTTAA
9._SPEC_54_/1
AATTAA____CCCCGG_CC__
10._SPEC_54_/1
AATTAA____CCCCGG_CC__
11._SPEC_54_/1
AATTAA____CCCCGG_CC__
12._SPEC_54_/1
AATTAA____CCCCGG_CC__
13._SPEC_54_/1
AATTAA____CCCCGG_CC__
14._SPEC_54_/1
AATTAA____CCCCGG_CC__
15._SPEC_54_/1
AATTAA____CCCCGG_CC__
16._SPEC_54_/1
AATTAA____CCCCGG_CC__
17._SPEC_54_/1
AA_AA____CCCCGG_CC__
18._GC-05-063-2-14
AATTAAGGGGCCCCCCCCGGTTCCTTAA
19._SPEC_54_/1
AATTAA____CCCCGG_CC__
20._RUQ_50
_TTAA__TT_CC__TTCC__
21._RUQ_50
AATTAA____CCCCGG_CC__
22._RUQ_50
__AA__TT________
 1516171819202122232425262728
_Input profile
CCGGGGCCGGTTAATTGGTTAACCGGAA
1._GC-05-162-4-15
CCGGGGCCGGTTAATTGGTTAACCGGAA
2._GC-05-063-2-14
CCGGGGCCGGTTAATTGGTTAACCGGAA
3._GC-05-162-4-15
CCGGGGCCGGTTAATTGGTTAACCGGAA
4._GC-05-162-4-15
CCGGGGCCGGTTAATTGGTTAACCGGAA
5._GC-05-063-2-14
CCGGGGCCGGTTAATTGGTTAACCGGAA
6._GC-05-162-4-15
CCGGGGCCGGTTAATTGGTTAACCGGAA
7._GC-05-063-2-14
CCGGGGCCGGTTAATTGGTTAACCGGAA
8._GC-05-063-2-14
CCGGGGCCGGTTAATTGGTTAACCGGAA
9._SPEC_54_/1
_GG__GG____TTAA_GGAA
10._SPEC_54_/1
_GG__GG____TTAA_GGAA
11._SPEC_54_/1
_GG__GG____TTAA_GGAA
12._SPEC_54_/1
_GG__GG____TTAA_GGAA
13._SPEC_54_/1
_GG__GG____TTAA_GGAA
14._SPEC_54_/1
_GG__GG____TTAA_GGAA
15._SPEC_54_/1
_GG__GG____TTAA_GGAA
16._SPEC_54_/1
_GG__GG____TTAA_GGAA
17._SPEC_54_/1
_GG__GG____TTAA_GGAA
18._GC-05-063-2-14
CCGGGGCCGGTTAATTGGTTAACCGGAA
19._SPEC_54_/1
_GG__GG____TTAA_GGAA
20._RUQ_50
___CC____GG_AACCGG_
21._RUQ_50
_GG__GG____TTAA_GGAA
22._RUQ_50
_GGTT_________GG_
 2930313233343536373839404142
_Input profile
TTGGAAGGCCAATTGGTTAACCAACCGG
1._GC-05-162-4-15
TTGGAAGGCCAATTGGTTAACCAACCGG
2._GC-05-063-2-14
TTGGAAGGCCAATTGGTTAACCAACCGG
3._GC-05-162-4-15
TTGGAAGGCCAATTGGTTAACCAACCGG
4._GC-05-162-4-15
TTGGAAGGCCAATTGGTTAACCAACCGG
5._GC-05-063-2-14
TTGGAAGGCCAATTGGTTAACCAACCGG
6._GC-05-162-4-15
TTGGAAGGCCAATTGGTTAACCAACCGG
7._GC-05-063-2-14
TTGGAAGGCCAATTGGTTAACCAACCGG
8._GC-05-063-2-14
TTGGAAGGCCAATTGGTTAACCAACCGG
9._SPEC_54_/1
___GG_AATT__AA____
10._SPEC_54_/1
___GG_AATT__AA____
11._SPEC_54_/1
___GG_AATT__AA____
12._SPEC_54_/1
___GG_AATT__AA____
13._SPEC_54_/1
___GG_AATT__AA____
14._SPEC_54_/1
___GG_AATT__AA____
15._SPEC_54_/1
___GG_AATT__AA____
16._SPEC_54_/1
___GG_AATT__AA____
17._SPEC_54_/1
___GG_AATT__AA____
18._GC-05-063-2-14
TTGGAAGGCCAATTGGTTAACCAACCGG
19._SPEC_54_/1
___GG_AATT__AA____
20._RUQ_50
__AAGGCCAATT__AACC__GG
21._RUQ_50
___GG_AAGT__AG____
22._RUQ_50
___GG_AA____CC___
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGAATTTTCCCCTT
1._GC-05-162-4-15
TTTTAAGGAACCCCGGAATTTTCCCCTT
2._GC-05-063-2-14
TTTTAAGGAACCCCGGAATTTTCCCCTT
3._GC-05-162-4-15
TTTTAAGGAACCCCGGAATTTTCCCCTT
4._GC-05-162-4-15
TTTTAAGGAACCCCGGAATTTTCCCCTT
5._GC-05-063-2-14
TTTTAAGGAACCCCGGAATTTTCCCCTT
6._GC-05-162-4-15
TTTTAAGGAACCCCGGAATTTTCCCCTT
7._GC-05-063-2-14
TTTTAAGGAACCCCGGAATTTTCCCCTT
8._GC-05-063-2-14
_TTAAGGAACCCCGGAATTTTCCCCTT
9._SPEC_54_/1
_TT_________CCCC_
10._SPEC_54_/1
_TT_________CCCC_
11._SPEC_54_/1
_TT_________CCCC_
12._SPEC_54_/1
_TT_________CCCC_
13._SPEC_54_/1
_TT_________CCCC_
14._SPEC_54_/1
_TT_________CCCC_
15._SPEC_54_/1
_TT_________CCCC_
16._SPEC_54_/1
_TT_________CCCC_
17._SPEC_54_/1
_TT_________CCCC_
18._GC-05-063-2-14
TTTTAAGGAACCCCGGAATTTTCTCCTT
19._SPEC_54_/1
_TT_________CTCC_
20._RUQ_50
TT__GG______TTCC_TT
21._RUQ_50
_TT_________CCCC_
22._RUQ_50
___GG__________
 5758596061626364656667686970
_Input profile
GGCCTTCTAAGGGGAAAATTGGGGTTCC
1._GC-05-162-4-15
GGCCTTCTAAGGGGAAAATTGGGGTTCC
2._GC-05-063-2-14
GGCCTTCTAAGGGGAAAATTGGGGTTCC
3._GC-05-162-4-15
GGCCTTCTAAGGGGAAAATTGGGGTTCC
4._GC-05-162-4-15
GGCCTTCTAAGGGGAAAATTGGGGTTCC
5._GC-05-063-2-14
GGCCTTCTAAGGGGAAAATTGGGGTTCC
6._GC-05-162-4-15
_CCTTCTAAGGGGAAAATTGGGGTTCC
7._GC-05-063-2-14
_CCTTCTAAGGGGAAAATTGGGGTTCC
8._GC-05-063-2-14
GGCCTTCTAAGGGGAAAATTGGGGTTCC
9._SPEC_54_/1
_CC_CTAAGG_AAAATTGG___
10._SPEC_54_/1
_CC_CTAAGG_AAAATTGG___
11._SPEC_54_/1
_CC_CTAAGG_AAAATTGG___
12._SPEC_54_/1
_CC_CTAAGG_AAAATTGG___
13._SPEC_54_/1
_CC_CTAAGG_AAAATTGG___
14._SPEC_54_/1
_CC_CTAAGG_AAAATTGG___
15._SPEC_54_/1
_CC_CTAAGG_AAAATTGG___
16._SPEC_54_/1
_CC_CTAAGG_AAAATTGG___
17._SPEC_54_/1
_CC_CTAAGG_AAAATTGG___
18._GC-05-063-2-14
GGCCTTCTAAGGGGAAAATTGGGGTTCC
19._SPEC_54_/1
_CC_CTAAGG_AAAATTGG___
20._RUQ_50
GGCCTTCTAA_GGAAAATTGGGG__
21._RUQ_50
_CC_CTAAGG_AAAATTGG___
22._RUQ_50
GG______AAAA_GGGG__
 7172737475767778798081828384
_Input profile
AATTAAAAAAAAAACCCCCCAAAACCCC
1._GC-05-162-4-15
AATTAAAAAAAAAACCCCCCAAAACCCC
2._GC-05-063-2-14
AATTAAAAAAAAAACCCCCCAAAACCCC
3._GC-05-162-4-15
AATTAAAAAAAAAACCCCCCAAAACCCC
4._GC-05-162-4-15
AATTAAAAAAAAAACCCCCCAAAACCCC
5._GC-05-063-2-14
AATT_AAAAAAAACCCCCCAAAACCCC
6._GC-05-162-4-15
AATTAAAAAAAAAACCCCCCAAAACCCC
7._GC-05-063-2-14
AATT_AAAAAAAACCCCCCAAAACCCC
8._GC-05-063-2-14
AATTAAAAAAAAAACCCCCCAAAACCCC
9._SPEC_54_/1
AATT_____CCCC___CCCC
10._SPEC_54_/1
AATT_____CCCC___CCCC
11._SPEC_54_/1
AATT_____CCCC___CCCC
12._SPEC_54_/1
AATT_____CCCC___CCCC
13._SPEC_54_/1
AATT_____CCCC___CCCC
14._SPEC_54_/1
AATT_____CCCC___CCCC
15._SPEC_54_/1
AATT_____CCCC___CCCC
16._SPEC_54_/1
AATT_____CCCC___CCCC
17._SPEC_54_/1
AATT_____CCCC___CCCC
18._GC-05-063-2-14
AATTAAAAAAAAAACCCCCCAAAACCCC
19._SPEC_54_/1
AATT_____CCCC___CCCC
20._RUQ_50
_______CCCC__AACC_
21._RUQ_50
AATT_____CCCC___CCCC
22._RUQ_50
AA______ACCC__AA__
 858687888990919293     
_Input profile
TTTTAACCTTTTTTAAGGX_XX_XX_XX_XX_X
1._GC-05-162-4-15
TTTTAACCTTTTTTAAGGX_XX_XX_XX_XX_X
2._GC-05-063-2-14
TTTTAACCTTTTTTAAGGX_XX_XX_XX_XX_X
3._GC-05-162-4-15
TTTTAACCTTTTTTAAGGX_XX_XX_XX_XX_X
4._GC-05-162-4-15
TTTTAACCTTTTTTAAGGX_XX_XX_XX_XX_X
5._GC-05-063-2-14
TTTTAACCTTTTTTAAGGX_XX_XX_XX_XX_X
6._GC-05-162-4-15
TTTTAACCTTTTTTAAGGX_XX_XX_XX_XX_X
7._GC-05-063-2-14
TTTTAACCTTTTTTAAGGX_XX_XX_XX_XX_X
8._GC-05-063-2-14
TTTTAACCTTTTTTAAGGX_XX_XX_XX_XX_X
9._SPEC_54_/1
TT_AA_TTTTTT__X_XX_XX_XX_XX_X
10._SPEC_54_/1
TT_AA_TTTTTT__X_XX_XX_XX_XX_X
11._SPEC_54_/1
TT_AA_TTTTTT__X_XX_XX_XX_XX_X
12._SPEC_54_/1
TT_AA_TTTTTT__X_XX_XX_XX_XX_X
13._SPEC_54_/1
TT_AA_TTTTTT__X_XX_XX_XX_XX_X
14._SPEC_54_/1
TT_AA_TTTTTT__X_XX_XX_XX_XX_X
15._SPEC_54_/1
TT_AA_TTTTTT__X_XX_XX_XX_XX_X
16._SPEC_54_/1
TT_AA_TTTTTT__X_XX_XX_XX_XX_X
17._SPEC_54_/1
TT_AA_TTTTTT__X_XX_XX_XX_XX_X
18._GC-05-063-2-14
TTTTAACCTTTTTTAAGGX_XX_XX_XX_XX_X
19._SPEC_54_/1
TT_AA_TTTTTT__X_XX_XX_XX_XX_X
20._RUQ_50
__AACCTTTT___X_XX_XX_XX_XX_X
21._RUQ_50
TT_AA_TTTTTT__X_XX_XX_XX_XX_X
22._RUQ_50
TT__CC_TT___X_XX_XX_XX_XX_X

Input profile: SPEC_54_/1 GC-05-162-4-15

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

1._SPEC_54_/1 GC-05-162-4-15

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

2._SPEC_54_/1 GC-05-063-2-14

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

3._SPEC_54_/1 GC-05-162-4-15

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._SPEC_54_/1 GC-05-162-4-15

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._SPEC_54_/1 GC-05-063-2-14

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

6._SPEC_54_/1 GC-05-162-4-15

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._SPEC_54_/1 GC-05-063-2-14

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

8._SPEC_54_/1 GC-05-063-2-14

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

9._SPEC_54_/1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5415 3
 Dapeng Zhang, 2016

10._SPEC_54_/1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5415 1 > FP
 Dapeng Zhang, 2016

11._SPEC_54_/1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5415 5
 Dapeng Zhang, 2016

12._SPEC_54_/1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5415 4
 Dapeng Zhang, 2016

13._SPEC_54_/1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5415 2
 Dapeng Zhang, 2016

14._SPEC_54_/1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5214 4 > FP
 Dapeng Zhang, 2016

15._SPEC_54_/1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5214 3 > FP
 Dapeng Zhang, 2016

16._SPEC_54_/1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5214 2 > FP
 Dapeng Zhang, 2016

17._SPEC_54_/1

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5214 1 > FP
 Dapeng Zhang, 2016

18._SPEC_54_/1 GC-05-063-2-14

99.5 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._SPEC_54_/1

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5214 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

20._SPEC_54_/1 RUQ_50

97.7 %
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._SPEC_54_/1 RUQ_50

97.4 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._SPEC_54_/1 RUQ_50

88.1 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP899 58TcSNP226 59TcSNP1439 60TcSNP1442
61TcSNP193 62TcSNP25 63TcSNP364 64TcSNP144 65TcSNP230
66TcSNP560 67TcSNP723 68TcSNP731 69TcSNP701 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414 92TcSNP154 93TcSNP240