SNP Profiles of AMAZ-12   View Data

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 Key

 1234567891011121314
_Input profile
ATCTACAGAACTCTTTCTGGTTCTCTAT
1._GC-05-158-4-11
ATCTACAGAACTCTTTCTGGTTCTCTAT
2._GC-05-010-1-10
ATCTACAGAACTCTTTCTGGTTCTCTAT
3._GC-05-010-1-10
ATCTACAGAACTCTTTCTGGTTCTCTAT
4._GC-05-010-1-10
ATCTACAGAACTCTTTCTGGTTCTCTAT
5._GC-05-010-1-10
ATCTACAGAACTCTTTCTGGTTCTCTAT
6._GC-05-010-1-10
ATCTACAGAACTCTTTCTGGTTCTCTAT
7._GC-05-158-4-11
ATCTACAGAACTCTTTCTGGTTCTCTAT
8._GC-05-158-4-11
ATCTACAGAACTCTTTCTGGTTCTCTAT
9._AMAZ_12
ATCTAC____TTCTGG_CT__
10._AMAZ_12
ATCTAC____TTCTGG_CT__
11._AMAZ_12
ATCTAC____TTCTGG_CT__
12._AMAZ_12
ATCTAC____TTCTGG_CT__
13._AMAZ_12
ATCTAC____TTCTGG_CT__
14._AMAZ_12
ATCTAC____TTCTGG_CT__
15._AMAZ_12
ATCTAC____TTCTGG_CT__
16._AMAZ_12
ATCTAC____TTCTGG_CT__
17._AMAZ_12
ATCTAC____TTCTGG_CT__
18._GC-05-158-4-11
ATCTACAGAACTCTTTCTGGTTCTCTAT
19._AMAZ_12
ATCTAC____TTCTGG_CT__
20._AMAZ_12
AACCAA____CTCCGG_CT__
21._RUQ_334
_CCAA__TT_CT__CTTT__
22._RUQ_334
AACCAA____CTCCAG_CT__
23._RUQ_334
__AA__CT________
24._RUQ_334b
__AA__TT________
25._RUQ_334
AA_AAGGGG_GGAG_GGAGAGAGTT
 1516171819202122232425262728
_Input profile
CCAAAGCGCCGGCCAAGGAAATGGGGAT
1._GC-05-158-4-11
CCAAAGCGCCGGCCAAGGAAATGGGGAT
2._GC-05-010-1-10
CCAAAGCGCCGGCCAAGGAAATGGGGAT
3._GC-05-010-1-10
CCAAAGCGCCGGCCAAGGAAATGGGGAT
4._GC-05-010-1-10
CCAAAGCGCCGGCCAAGGAAATGGGGAT
5._GC-05-010-1-10
CCAAAGCGCCGGCCAAGGAAATGGGGAT
6._GC-05-010-1-10
CCAAAGCGCCGGCCAAGGAAATGGGGAT
7._GC-05-158-4-11
CCAAAGCG_GGCCAAGGAAATGGGGAT
8._GC-05-158-4-11
CCAAAGCGCCGGCCAAGGAAATGGGGAT
9._AMAZ_12
__AG__GG___AAAT_GGAT
10._AMAZ_12
__AG__GG___AAAT_GGAT
11._AMAZ_12
__AG__GG___AAAT_GGAT
12._AMAZ_12
__AG__GG___AAAT_GGAT
13._AMAZ_12
__AG__GG___AAAT_GGAT
14._AMAZ_12
__AG__GG___AAAT_GGAT
15._AMAZ_12
__AG__GG___AAAT_GGAT
16._AMAZ_12
__AG__GG___AAAT_GGAT
17._AMAZ_12
__AG__GG___AAAT_GGAT
18._GC-05-158-4-11
CCAAAGCGCCGGCCAAGGAAATGGGGAT
19._AMAZ_12
__AG__GG___AAAT_GGAT
20._AMAZ_12
__GG__GG___ATAT_CGAT
21._RUQ_334
____CG___GG_ATCCCG_
22._RUQ_334
__GG__GG___ATAT_CGAT
23._RUQ_334
__GGTT________GG_
24._RUQ_334b
__GGCT________CG_
25._RUQ_334
AAGGGGCG_GGAGAAGGATATGGCGAT
 2930313233343536373839404142
_Input profile
CTGGGGCCCCAAGTGTAACCAGCCGGTT
1._GC-05-158-4-11
CTGGGGCCCCAAGTGTAACCAGCCGGTT
2._GC-05-010-1-10
CTGGGGCCCCAAGTGTAACCAGCCGGTT
3._GC-05-010-1-10
CTGGGGCCCCAAGTGTAACCAGCCGGTT
4._GC-05-010-1-10
CTGGGGCCCCAAGTGTAACCAGCCGGTT
5._GC-05-010-1-10
CTGGGGCCCCAAGTGTAACCAGCCGGTT
6._GC-05-010-1-10
CTGGGGCCCCAAGTGTAACCAGCCGGTT
7._GC-05-158-4-11
CTGGGGCCCCAAGTGTAACCAGCCGGTT
8._GC-05-158-4-11
CTGGGGCCCCAAGTGTAACCAGCCGGTT
9._AMAZ_12
___CC_AAGT_AA_____
10._AMAZ_12
___CC_AAGT_AA_____
11._AMAZ_12
___CC_AAGT_AA_____
12._AMAZ_12
___CC_AAGT_AA_____
13._AMAZ_12
___CC_AAGT_AA_____
14._AMAZ_12
___CC_AAGT_AA_____
15._AMAZ_12
___CC_AAGT_AA_____
16._AMAZ_12
___CC_AAGT_AA_____
17._AMAZ_12
___CC_AAGT_AA_____
18._GC-05-158-4-11
CTGGGGCCCCAGGTGTAACCAGCCGGTT
19._AMAZ_12
___CC_AGGT_AA_____
20._AMAZ_12
___GG_AGTT_AA_____
21._RUQ_334
__AGCGCCAGGT_AACT__GGTT
22._RUQ_334
___GG_AGGT_AG_____
23._RUQ_334
___GG_AG___TT____
24._RUQ_334b
___GG_AG___CT____
25._RUQ_334
AAACAGCGCCAGACAAAAAGGGGGCC_
 4344454647484950515253545556
_Input profile
CTAAAGAACCCCGGAGGGTTCTCCTTAG
1._GC-05-158-4-11
CTAAAGAACCCCGGAGGGTTCTCCTTAG
2._GC-05-010-1-10
CTAAAGAACCCCGGAGGGTTCTCCTTAG
3._GC-05-010-1-10
CTAAAGAACCCCGGAGGGTTCTCCTTAG
4._GC-05-010-1-10
CTAAAGAACCCCGGAGGGTTCTCCTTAG
5._GC-05-010-1-10
CTAAAGAACCCCGGAGGGTTCTCCTTAG
6._GC-05-010-1-10
CTAAAGAACCCCGGAGGGTTCTCCTTAG
7._GC-05-158-4-11
CTAAAGAACCCCGGAGGGTTCTCCTTAG
8._GC-05-158-4-11
CTAAAGAACCCCGGAGGGTT_CCTTAG
9._AMAZ_12
CT_________CTCC__
10._AMAZ_12
CT_________CTCC__
11._AMAZ_12
CT_________CTCC__
12._AMAZ_12
CT_________CTCC__
13._AMAZ_12
CT_________CTCC__
14._AMAZ_12
CT_________CTCC__
15._AMAZ_12
CT_________CTCC__
16._AMAZ_12
CT_________CTCC__
17._AMAZ_12
CT__________CC__
18._GC-05-158-4-11
CTAAAGAACCCCGGAGGGTTCTCCTTAG
19._AMAZ_12
CT_________CTCC__
20._AMAZ_12
TT_________CCCC__
21._RUQ_334
__GG______CTCC_TT-
22._RUQ_334
TT_________CCCC__
23._RUQ_334
__GG__________GG
24._RUQ_334b
__GG__________GG
25._RUQ_334
AA_GGAAGG_GGAAAAAGGGGGAAGG
 5758596061626364656667686970
_Input profile
CGCTCCGGGGAAGTGTAGCTCGAATTAC
1._GC-05-158-4-11
CGCTCCGGGGAAGTGTAGCTCGAATTAC
2._GC-05-010-1-10
CGCTCCGGGGAAGTGTAGCTCGAATTAC
3._GC-05-010-1-10
CGCTCCGGGGAAGTGTAGCTCGAATTAC
4._GC-05-010-1-10
CGCTCCGGGGAAGTGTAGCTCGAATTAC
5._GC-05-010-1-10
CGCTCCGGGGAAGTGTAGCTCGAATTAC
6._GC-05-010-1-10
CGCTCCGGGGAAGTGTAGCTCGAATTAC
7._GC-05-158-4-11
CGCTCCGGGGAAGTGTAGCTCGAATTAC
8._GC-05-158-4-11
CGCTCCGGGGAAGTGTAGCTCGAATTAC
9._AMAZ_12
CG_CCGG_AAGTGT___AATT_
10._AMAZ_12
CG_CCGG_AAGTGT___AATT_
11._AMAZ_12
CG_CCGG_AAGTGT___AATT_
12._AMAZ_12
CG_CCGG_AAGTGT___AATT_
13._AMAZ_12
CG_CCGG_AAGTGT___AATT_
14._AMAZ_12
CG_CCGG_AAGTGT___AATT_
15._AMAZ_12
CG_CCGG_AAGTGT___AATT_
16._AMAZ_12
CG_CCGG_AAGTGT___AATT_
17._AMAZ_12
CG_CCGG_AAGTGT___AATT_
18._GC-05-158-4-11
CGCTCCGGGGAAGTGTAGCTCGAATTAC
19._AMAZ_12
CG_CCGG_AAGTGT___AATT_
20._AMAZ_12
CG_TTGG_GGGTGG___AATT_
21._RUQ_334
CGCTTT_GGGGGTGGAG_____
22._RUQ_334
CG_TTGG_GGGTGG___AATT_
23._RUQ_334
_____GG_GGAG__AA__
24._RUQ_334b
_____GG_GGAG__AA__
25._RUQ_334
CGAGAAGGGGGGACCCAG___AACC
 7172737475767778798081828384
_Input profile
AGACACAGACCGCCAACCCTCTTTAGCC
1._GC-05-158-4-11
AGACACAGACCGCCAACCCTCTTTAGCC
2._GC-05-010-1-10
AGACACAGACCGCCAACCCTCTTTAGCC
3._GC-05-010-1-10
AGACACAGACCGCCAACCCTCTTTAGCC
4._GC-05-010-1-10
AGACACAGACCGCCAACCCTCTTTAGCC
5._GC-05-010-1-10
AGACACAGACCGCCAACCCTCTTTAGCC
6._GC-05-010-1-10
AGACACAGACCGCCAACCCTCTTTAGCC
7._GC-05-158-4-11
AGACACAGACCGCCAACCCTCTTTAGCC
8._GC-05-158-4-11
AGACACAGACCGCCAACCCTCTTTAGCC
9._AMAZ_12
____ACCG___CTCT_AG_
10._AMAZ_12
____ACCG___CTCT_AG_
11._AMAZ_12
____ACCG___CTCT_AG_
12._AMAZ_12
____ACCG___CTCT_AG_
13._AMAZ_12
____ACCG___CTCT_AG_
14._AMAZ_12
____ACCG___CTCT_AG_
15._AMAZ_12
____ACCG___CTCT_AG_
16._AMAZ_12
____ACCG___CTCT_AG_
17._AMAZ_12
____ACCG___CTCT_AG_
18._GC-05-158-4-11
AGACACAGACCGCCAACCCTCTTTAGCC
19._AMAZ_12
____ACCG___CTCT_AG_
20._AMAZ_12
____CCGG___CTCT_AA_
21._RUQ_334
____CCGG__CCCT__AACC
22._RUQ_334
____CCGG___CTCT_AA_
23._RUQ_334
____ACGG__AC____CT
24._RUQ_334b
____CCGG__CC____CC
25._RUQ_334
AGACAA_CCCCGGATCCAGAGAG__
 8586878889         
_Input profile
CTGTCTATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._GC-05-158-4-11
CTGTCTATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._GC-05-010-1-10
CTGTCTATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._GC-05-010-1-10
CTGTCTATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._GC-05-010-1-10
CTGTCTATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GC-05-010-1-10
CTGTCTATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GC-05-010-1-10
CTGTCTATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GC-05-158-4-11
CTGTCTATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GC-05-158-4-11
CTGTCTATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._AMAZ_12
CTGTCT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
10._AMAZ_12
CTGTCT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
11._AMAZ_12
CTGTCT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
12._AMAZ_12
CTGTCT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
13._AMAZ_12
CTGTCT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
14._AMAZ_12
CTGTCT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
15._AMAZ_12
CTGTCT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
16._AMAZ_12
CTGTCT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
17._AMAZ_12
CTGTCT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-05-158-4-11
CTGTCTATGGX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._AMAZ_12
CTGTCT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
20._AMAZ_12
CCTTCT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
21._RUQ_334
CCTT___X_XX_XX_XX_XX_XX_XX_XX_XX_X
22._RUQ_334
CCTTCT__X_XX_XX_XX_XX_XX_XX_XX_XX_X
23._RUQ_334
_TT___X_XX_XX_XX_XX_XX_XX_XX_XX_X
24._RUQ_334b
_TT___X_XX_XX_XX_XX_XX_XX_XX_XX_X
25._RUQ_334
GGAAAGAAGGX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: AMAZ_12 GC-05-158-4-11

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

1._AMAZ_12 GC-05-158-4-11

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

2._AMAZ_12 GC-05-010-1-10

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

3._AMAZ_12 GC-05-010-1-10

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

4._AMAZ_12 GC-05-010-1-10

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

5._AMAZ_12 GC-05-010-1-10

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

6._AMAZ_12 GC-05-010-1-10

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

7._AMAZ_12 GC-05-158-4-11

identical
88 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

8._AMAZ_12 GC-05-158-4-11

identical
88 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

9._AMAZ_12

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5110 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

10._AMAZ_12

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5110 3
 Dapeng Zhang, 2016

11._AMAZ_12

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5110 5
 Dapeng Zhang, 2016

12._AMAZ_12

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5110 2 > FP
 Dapeng Zhang, 2016

13._AMAZ_12

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5110 4 > FP
 Dapeng Zhang, 2016

14._AMAZ_12

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5411 3
 Dapeng Zhang, 2016

15._AMAZ_12

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5411 5
 Dapeng Zhang, 2016

16._AMAZ_12

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5411 1 > FP
 Dapeng Zhang, 2016

17._AMAZ_12

identical
35 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5411 2 > FP
 Dapeng Zhang, 2016

18._AMAZ_12 GC-05-158-4-11

99.4 %
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

19._AMAZ_12

98.6 %
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5411 4
 Dapeng Zhang, 2016

20._AMAZ_12

66.7 %
36 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B B94 T2
 Dapeng Zhang, 2016

21._AMAZ_12 RUQ_334

66.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._AMAZ_12 RUQ_334

65.3 %
36 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

23._AMAZ_12 RUQ_334

52.6 %
19 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

24._AMAZ_12 RUQ_334b

52.6 %
19 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

25._AMAZ_12 RUQ_334

39.5 %
76 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP751 37TcSNP1484 38TcSNP602 39TcSNP561 40TcSNP894
41TcSNP1063 42TcSNP1126 43TcSNP1270 44TcSNP606 45TcSNP329
46TcSNP689 47TcSNP944 48TcSNP1242 49TcSNP1383 50TcSNP547
51TcSNP776 52TcSNP1309 53TcSNP151 54TcSNP1520 55TcSNP799
56TcSNP899 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP25
61TcSNP364 62TcSNP230 63TcSNP560 64TcSNP723 65TcSNP731
66TcSNP701 67TcSNP1041 68TcSNP645 69TcSNP917 70Tcm003s01336581
71Tcm003s07402719 72Tcm001s00947643 73Tcm006s26664133 74Tcm002s20575712 75TcSNP529
76TcSNP1458 77TcSNP60 78TcSNP430 79TcSNP823 80TcSNP619
81TcSNP994 82TcSNP1156 83TcSNP469 84TcSNP999 85TcSNP242
86TcSNP1253 87TcSNP1414 88TcSNP154 89TcSNP240