SNP Profiles of SPEC-54/1   View Data

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 Key

 1234567891011121314
_Input profile
AATTAAGGGGCCCCCCCCGGTTCCTTAA
1._GC-05-162-4-15
AATTAAGGGGCCCCCCCCGGTTCCTTAA
2._GC-05-162-4-15
AATTAAGGGGCCCCCCCCGGTTCCTTAA
3._GC-05-063-2-14
AATTAAGGGGCCCCCCCCGGTTCCTTAA
4._GC-05-063-2-14
AATTAAGGGGCCCCCCCCGGTTCCTTAA
5._GC-05-162-4-15
AATTAAGGGGCCCCCCCCGGTTCCTTAA
6._GC-05-162-4-15
AATTAAGGGGCCCCCCCCGGTTCCTTAA
7._GC-05-162-4-15
AATTAAGGGGCCCCCCCCGGTTCCTTAA
8._GC-05-063-2-14
AA_AAGGGGCCCCCCCCGGTTCCTTAA
9._SPEC_54_/1
AATTAA____CCCCGG_CC__
10._SPEC_54_/1
AATTAA____CCCCGG_CC__
11._SPEC_54_/1
AATTAA____CCCCGG_CC__
12._SPEC_54_/1
AATTAA____CCCCGG_CC__
13._SPEC_54_/1
AATTAA____CCCCGG_CC__
14._SPEC_54_/1
AATTAA____CCCCGG_CC__
15._SPEC_54_/1
AATTAA____CCCCGG_CC__
16._SPEC_54_/1
AATTAA____CCCCGG_CC__
17._SPEC_54_/1
AA_AA____CCCCGG_CC__
18._GC-05-063-2-14
AATTAAGGGGCCCCCCCCGGTTCCTTAA
19._SPEC_54_/1
AATTAA____CCCCGG_CC__
20._RUQ_50
_TTAA__TT_CC__TTCC__
21._RUQ_50
AATTAA____CCCCGG_CC__
22._RUQ_50
__AA__TT________
 1516171819202122232425262728
_Input profile
CCGGGGCCGGTTAATTGGTTAACCGGAA
1._GC-05-162-4-15
CCGGGGCCGGTTAATTGGTTAACCGGAA
2._GC-05-162-4-15
CCGGGGCCGGTTAATTGGTTAACCGGAA
3._GC-05-063-2-14
CCGGGGCCGGTTAATTGGTTAACCGGAA
4._GC-05-063-2-14
CCGGGGCCGGTTAATTGGTTAACCGGAA
5._GC-05-162-4-15
CCGGGGCCGGTTAATTGGTTAACCGGAA
6._GC-05-162-4-15
CCGGGGCCGGTTAATTGGTTAACCGGAA
7._GC-05-162-4-15
CCGGGGCCGGTTAATTGGTTAACCGGAA
8._GC-05-063-2-14
CCGGGGCCGGTTAATTGGTTAACCGGAA
9._SPEC_54_/1
_GG__GG____TTAA_GGAA
10._SPEC_54_/1
_GG__GG____TTAA_GGAA
11._SPEC_54_/1
_GG__GG____TTAA_GGAA
12._SPEC_54_/1
_GG__GG____TTAA_GGAA
13._SPEC_54_/1
_GG__GG____TTAA_GGAA
14._SPEC_54_/1
_GG__GG____TTAA_GGAA
15._SPEC_54_/1
_GG__GG____TTAA_GGAA
16._SPEC_54_/1
_GG__GG____TTAA_GGAA
17._SPEC_54_/1
_GG__GG____TTAA_GGAA
18._GC-05-063-2-14
CCGGGGCCGGTTAATTGGTTAACCGGAA
19._SPEC_54_/1
_GG__GG____TTAA_GGAA
20._RUQ_50
___CC____GG_AACCGG_
21._RUQ_50
_GG__GG____TTAA_GGAA
22._RUQ_50
_GGTT_________GG_
 2930313233343536373839404142
_Input profile
TTGGAAGGCCAATTGGTTAACCAACCGG
1._GC-05-162-4-15
TTGGAAGGCCAATTGGTTAACCAACCGG
2._GC-05-162-4-15
TTGGAAGGCCAATTGGTTAACCAACCGG
3._GC-05-063-2-14
TTGGAAGGCCAATTGGTTAACCAACCGG
4._GC-05-063-2-14
TTGGAAGGCCAATTGGTTAACCAACCGG
5._GC-05-162-4-15
TTGGAAGGCCAATTGGTTAACCAACCGG
6._GC-05-162-4-15
TTGGAAGGCCAATTGGTTAACCAACCGG
7._GC-05-162-4-15
TTGGAAGGCCAATTGGTTAACCAACCGG
8._GC-05-063-2-14
TTGGAAGGCCAATTGGTTAACCAACCGG
9._SPEC_54_/1
___GG_AATT__AA____
10._SPEC_54_/1
___GG_AATT__AA____
11._SPEC_54_/1
___GG_AATT__AA____
12._SPEC_54_/1
___GG_AATT__AA____
13._SPEC_54_/1
___GG_AATT__AA____
14._SPEC_54_/1
___GG_AATT__AA____
15._SPEC_54_/1
___GG_AATT__AA____
16._SPEC_54_/1
___GG_AATT__AA____
17._SPEC_54_/1
___GG_AATT__AA____
18._GC-05-063-2-14
TTGGAAGGCCAATTGGTTAACCAACCGG
19._SPEC_54_/1
___GG_AATT__AA____
20._RUQ_50
__AAGGCCAATT__AACC__GG
21._RUQ_50
___GG_AAGT__AG____
22._RUQ_50
___GG_AA____CC___
 4344454647484950515253545556
_Input profile
TTTTAAGGAACCCCGGAATTTTCCCCTT
1._GC-05-162-4-15
TTTTAAGGAACCCCGGAATTTTCCCCTT
2._GC-05-162-4-15
TTTTAAGGAACCCCGGAATTTTCCCCTT
3._GC-05-063-2-14
TTTTAAGGAACCCCGGAATTTTCCCCTT
4._GC-05-063-2-14
TTTTAAGGAACCCCGGAATTTTCCCCTT
5._GC-05-162-4-15
TTTTAAGGAACCCCGGAATTTTCCCCTT
6._GC-05-162-4-15
TTTTAAGGAACCCCGGAATTTTCCCCTT
7._GC-05-162-4-15
TTTTAAGGAACCCCGGAATTTTCCCCTT
8._GC-05-063-2-14
_TTAAGGAACCCCGGAATTTTCCCCTT
9._SPEC_54_/1
_TT_________CCCC_
10._SPEC_54_/1
_TT_________CCCC_
11._SPEC_54_/1
_TT_________CCCC_
12._SPEC_54_/1
_TT_________CCCC_
13._SPEC_54_/1
_TT_________CCCC_
14._SPEC_54_/1
_TT_________CCCC_
15._SPEC_54_/1
_TT_________CCCC_
16._SPEC_54_/1
_TT_________CCCC_
17._SPEC_54_/1
_TT_________CCCC_
18._GC-05-063-2-14
TTTTAAGGAACCCCGGAATTTTCTCCTT
19._SPEC_54_/1
_TT_________CTCC_
20._RUQ_50
TT__GG______TTCC_TT
21._RUQ_50
_TT_________CCCC_
22._RUQ_50
___GG__________
 5758596061626364656667686970
_Input profile
CCTTCTAAGGGGAAAATTGGGGTTCCAA
1._GC-05-162-4-15
CCTTCTAAGGGGAAAATTGGGGTTCCAA
2._GC-05-162-4-15
CCTTCTAAGGGGAAAATTGGGGTTCCAA
3._GC-05-063-2-14
CCTTCTAAGGGGAAAATTGGGGTTCCAA
4._GC-05-063-2-14
CCTTCTAAGGGGAAAATTGGGGTTCCAA
5._GC-05-162-4-15
CCTTCTAAGGGGAAAATTGGGGTTCCAA
6._GC-05-162-4-15
CCTTCTAAGGGGAAAATTGGGGTTCCAA
7._GC-05-162-4-15
CCTTCTAAGGGGAAAATTGGGGTTCCAA
8._GC-05-063-2-14
CCTTCTAAGGGGAAAATTGGGGTTCCAA
9._SPEC_54_/1
CC_CTAAGG_AAAATTGG___AA
10._SPEC_54_/1
CC_CTAAGG_AAAATTGG___AA
11._SPEC_54_/1
CC_CTAAGG_AAAATTGG___AA
12._SPEC_54_/1
CC_CTAAGG_AAAATTGG___AA
13._SPEC_54_/1
CC_CTAAGG_AAAATTGG___AA
14._SPEC_54_/1
CC_CTAAGG_AAAATTGG___AA
15._SPEC_54_/1
CC_CTAAGG_AAAATTGG___AA
16._SPEC_54_/1
CC_CTAAGG_AAAATTGG___AA
17._SPEC_54_/1
CC_CTAAGG_AAAATTGG___AA
18._GC-05-063-2-14
CCTTCTAAGGGGAAAATTGGGGTTCCAA
19._SPEC_54_/1
CC_CTAAGG_AAAATTGG___AA
20._RUQ_50
CCTTCTAA_GGAAAATTGGGG___
21._RUQ_50
CC_CTAAGG_AAAATTGG___AA
22._RUQ_50
______AAAA_GGGG__AA
 7172737475767778798081828384
_Input profile
TTAAAAAAAACCCCCCAAAACCCCTTTT
1._GC-05-162-4-15
TTAAAAAAAACCCCCCAAAACCCCTTTT
2._GC-05-162-4-15
TTAAAAAAAACCCCCCAAAACCCCTTTT
3._GC-05-063-2-14
TTAAAAAAAACCCCCCAAAACCCCTTTT
4._GC-05-063-2-14
TTAAAAAAAACCCCCCAAAACCCCTTTT
5._GC-05-162-4-15
TTAAAAAAAACCCCCCAAAACCCCTTTT
6._GC-05-162-4-15
TTAAAAAAAACCCCCCAAAACCCCTTTT
7._GC-05-162-4-15
TTAAAAAAAACCCCCCAAAACCCCTTTT
8._GC-05-063-2-14
TTAAAAAAAACCCCCCAAAACCCCTTTT
9._SPEC_54_/1
TT____CCCC___CCCCTT_
10._SPEC_54_/1
TT____CCCC___CCCCTT_
11._SPEC_54_/1
TT____CCCC___CCCCTT_
12._SPEC_54_/1
TT____CCCC___CCCCTT_
13._SPEC_54_/1
TT____CCCC___CCCCTT_
14._SPEC_54_/1
TT____CCCC___CCCCTT_
15._SPEC_54_/1
TT____CCCC___CCCCTT_
16._SPEC_54_/1
TT____CCCC___CCCCTT_
17._SPEC_54_/1
TT____CCCC___CCCCTT_
18._GC-05-063-2-14
TTAAAAAAAACCCCCCAAAACCCCTTTT
19._SPEC_54_/1
TT____CCCC___CCCCTT_
20._RUQ_50
_____CCCC__AACC___
21._RUQ_50
TT____CCCC___CCCCTT_
22._RUQ_50
_____ACCC__AA__TT_
 85868788899091       
_Input profile
AACCTTTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
1._GC-05-162-4-15
AACCTTTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
2._GC-05-162-4-15
AACCTTTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
3._GC-05-063-2-14
AACCTTTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
4._GC-05-063-2-14
AACCTTTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
5._GC-05-162-4-15
AACCTTTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
6._GC-05-162-4-15
AACCTTTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
7._GC-05-162-4-15
AACCTTTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
8._GC-05-063-2-14
AACCTTTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
9._SPEC_54_/1
AA_TTTTTT__X_XX_XX_XX_XX_XX_XX_X
10._SPEC_54_/1
AA_TTTTTT__X_XX_XX_XX_XX_XX_XX_X
11._SPEC_54_/1
AA_TTTTTT__X_XX_XX_XX_XX_XX_XX_X
12._SPEC_54_/1
AA_TTTTTT__X_XX_XX_XX_XX_XX_XX_X
13._SPEC_54_/1
AA_TTTTTT__X_XX_XX_XX_XX_XX_XX_X
14._SPEC_54_/1
AA_TTTTTT__X_XX_XX_XX_XX_XX_XX_X
15._SPEC_54_/1
AA_TTTTTT__X_XX_XX_XX_XX_XX_XX_X
16._SPEC_54_/1
AA_TTTTTT__X_XX_XX_XX_XX_XX_XX_X
17._SPEC_54_/1
AA_TTTTTT__X_XX_XX_XX_XX_XX_XX_X
18._GC-05-063-2-14
AACCTTTTTTAAGGX_XX_XX_XX_XX_XX_XX_X
19._SPEC_54_/1
AA_TTTTTT__X_XX_XX_XX_XX_XX_XX_X
20._RUQ_50
AACCTTTT___X_XX_XX_XX_XX_XX_XX_X
21._RUQ_50
AA_TTTTTT__X_XX_XX_XX_XX_XX_XX_X
22._RUQ_50
_CC_TT___X_XX_XX_XX_XX_XX_XX_X

Input profile: SPEC_54_/1 GC-05-063-2-14

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

1._SPEC_54_/1 GC-05-162-4-15

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

2._SPEC_54_/1 GC-05-162-4-15

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

3._SPEC_54_/1 GC-05-063-2-14

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

4._SPEC_54_/1 GC-05-063-2-14

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

5._SPEC_54_/1 GC-05-162-4-15

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._SPEC_54_/1 GC-05-162-4-15

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._SPEC_54_/1 GC-05-162-4-15

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._SPEC_54_/1 GC-05-063-2-14

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP3
 Mars, 2018

9._SPEC_54_/1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5415 3
 Dapeng Zhang, 2016

10._SPEC_54_/1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5415 1 > FP
 Dapeng Zhang, 2016

11._SPEC_54_/1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5415 5
 Dapeng Zhang, 2016

12._SPEC_54_/1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5415 4
 Dapeng Zhang, 2016

13._SPEC_54_/1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5415 2
 Dapeng Zhang, 2016

14._SPEC_54_/1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5214 4 > FP
 Dapeng Zhang, 2016

15._SPEC_54_/1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5214 3 > FP
 Dapeng Zhang, 2016

16._SPEC_54_/1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5214 2 > FP
 Dapeng Zhang, 2016

17._SPEC_54_/1

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5214 1 > FP
 Dapeng Zhang, 2016

18._SPEC_54_/1 GC-05-063-2-14

99.5 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

19._SPEC_54_/1

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5214 5
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

20._SPEC_54_/1 RUQ_50

97.6 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._SPEC_54_/1 RUQ_50

97.4 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

22._SPEC_54_/1 RUQ_50

87.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP894 42TcSNP1063 43TcSNP1126 44TcSNP1270 45TcSNP606
46TcSNP329 47TcSNP689 48TcSNP944 49TcSNP1242 50TcSNP1383
51TcSNP547 52TcSNP776 53TcSNP1309 54TcSNP151 55TcSNP1520
56TcSNP799 57TcSNP226 58TcSNP1439 59TcSNP1442 60TcSNP193
61TcSNP25 62TcSNP364 63TcSNP144 64TcSNP230 65TcSNP560
66TcSNP723 67TcSNP731 68TcSNP701 69TcSNP1041 70TcSNP645
71TcSNP917 72Tcm003s07402719 73Tcm001s00947643 74Tcm006s26664133 75Tcm002s20575712
76TcSNP529 77TcSNP1458 78TcSNP60 79TcSNP430 80TcSNP823
81TcSNP619 82TcSNP994 83TcSNP1144 84TcSNP1156 85TcSNP469
86TcSNP999 87TcSNP242 88TcSNP1253 89TcSNP1414 90TcSNP154
91TcSNP240