SNP Profiles of AMAZ-12   View Data

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 Key

 1234567891011121314
_Input profile
ATCTACAGAACTCTTTCTGGTTCTCTAT
1._GC-05-158-4-11
ATCTACAGAACTCTTTCTGGTTCTCTAT
2._GC-05-010-1-10
ATCTACAGAACTCTTTCTGGTTCTCTAT
3._GC-05-010-1-10
ATCTACAGAACTCTTTCTGGTTCTCTAT
4._GC-05-010-1-10
ATCTACAGAACTCTTTCTGGTTCTCTAT
5._GC-05-158-4-11
ATCTACAGAACTCTTTCTGGTTCTCTAT
6._GC-05-158-4-11
ATCTACAGAACTCTTTCTGGTTCTCTAT
7._GC-05-010-1-10
ATCTACAGAACTCTTTCTGGTTCTCTAT
8._GC-05-158-4-11
ATCTACAGAACTCTTTCTGGTTCTCTAT
9._AMAZ_12
ATCTAC____TTCTGG_CT__
10._AMAZ_12
ATCTAC____TTCTGG_CT__
11._AMAZ_12
ATCTAC____TTCTGG_CT__
12._AMAZ_12
ATCTAC____TTCTGG_CT__
13._AMAZ_12
ATCTAC____TTCTGG_CT__
14._AMAZ_12
ATCTAC____TTCTGG_CT__
15._AMAZ_12
ATCTAC____TTCTGG_CT__
16._AMAZ_12
ATCTAC____TTCTGG_CT__
17._AMAZ_12
ATCTAC____TTCTGG_CT__
18._GC-05-158-4-11
ATCTACAGAACTCTTTCTGGTTCTCTAT
19._AMAZ_12
ATCTAC____TTCTGG_CT__
20._AMAZ_12
AACCAA____CTCCGG_CT__
21._RUQ_334
_CCAA__TT_CT__CTTT__
22._RUQ_334
AACCAA____CTCCAG_CT__
23._RUQ_334b
__AA__TT________
24._RUQ_334
__AA__CT________
25._RUQ_334
AA_AAGGGG_GGAG_GGAGAGAGTT
 1516171819202122232425262728
_Input profile
CCAAAGCGCCGGCCAATTGGAAATGGGG
1._GC-05-158-4-11
CCAAAGCGCCGGCCAATTGGAAATGGGG
2._GC-05-010-1-10
CCAAAGCGCCGGCCAATTGGAAATGGGG
3._GC-05-010-1-10
CCAAAGCGCCGGCCAATTGGAAATGGGG
4._GC-05-010-1-10
CCAAAGCGCCGGCCAATTGGAAATGGGG
5._GC-05-158-4-11
CCAAAGCG_GGCCAATTGGAAATGGGG
6._GC-05-158-4-11
CCAAAGCGCCGGCCAATTGGAAATGGGG
7._GC-05-010-1-10
CCAAAGCGCCGGCCAATTGGAAATGGGG
8._GC-05-158-4-11
CCAAAGCGCCGGCCAA_GGAAATGGGG
9._AMAZ_12
__AG__GG____AAAT_GG
10._AMAZ_12
__AG__GG____AAAT_GG
11._AMAZ_12
__AG__GG____AAAT_GG
12._AMAZ_12
__AG__GG____AAAT_GG
13._AMAZ_12
__AG__GG____AAAT_GG
14._AMAZ_12
__AG__GG____AAAT_GG
15._AMAZ_12
__AG__GG____AAAT_GG
16._AMAZ_12
__AG__GG____AAAT_GG
17._AMAZ_12
__AG__GG____AAAT_GG
18._GC-05-158-4-11
CCAAAGCGCCGGCCAATTGGAAATGGGG
19._AMAZ_12
__AG__GG____AAAT_GG
20._AMAZ_12
__GG__GG____ATAT_CG
21._RUQ_334
____CG____GG_ATCCCG
22._RUQ_334
__GG__GG____ATAT_CG
23._RUQ_334b
__GGCT_________CG
24._RUQ_334
__GGTT_________GG
25._RUQ_334
AAGGGGCG_GGAGAAAAGGATATGGCG
 2930313233343536373839404142
_Input profile
ATCTGGGGCCCCAAGTGGGTAACCAGCC
1._GC-05-158-4-11
ATCTGGGGCCCCAAGTGGGTAACCAGCC
2._GC-05-010-1-10
ATCTGGGGCCCCAAGTGGGTAACCAGCC
3._GC-05-010-1-10
ATCTGGGGCCCCAAGTGGGTAACCAGCC
4._GC-05-010-1-10
ATCTGGGGCCCCAAGTGGGTAACCAGCC
5._GC-05-158-4-11
ATCTGGGGCCCCAAGTGGGTAACCAGCC
6._GC-05-158-4-11
ATCTGGGGCCCCAAGTGGGTAACCAGCC
7._GC-05-010-1-10
ATCTGGGGCCCCAAGTGGGTAACCAGCC
8._GC-05-158-4-11
ATCTGGGGCCCCAAGT_GTAACCAGCC
9._AMAZ_12
AT___CC_AAGT__AA___
10._AMAZ_12
AT___CC_AAGT__AA___
11._AMAZ_12
AT___CC_AAGT__AA___
12._AMAZ_12
AT___CC_AAGT__AA___
13._AMAZ_12
AT___CC_AAGT__AA___
14._AMAZ_12
AT___CC_AAGT__AA___
15._AMAZ_12
AT___CC_AAGT__AA___
16._AMAZ_12
AT___CC_AAGT__AA___
17._AMAZ_12
AT___CC_AAGT__AA___
18._GC-05-158-4-11
ATCTGGGGCCCCAGGTGGGTAACCAGCC
19._AMAZ_12
AT___CC_AGGT__AA___
20._AMAZ_12
AT___GG_AGTT__AA___
21._RUQ_334
___AGCGCCAGGT__AACT__
22._RUQ_334
AT___GG_AGGT__AG___
23._RUQ_334b
____GG_AG____CT__
24._RUQ_334
____GG_AG____TT__
25._RUQ_334
ATAAACAGCGCCAGACCCAAAAAGGGGG
 4344454647484950515253545556
_Input profile
GGTTCTAAAGAACCCCGGAGGGTTCTCC
1._GC-05-158-4-11
GGTTCTAAAGAACCCCGGAGGGTTCTCC
2._GC-05-010-1-10
GGTTCTAAAGAACCCCGGAGGGTTCTCC
3._GC-05-010-1-10
GGTTCTAAAGAACCCCGGAGGGTTCTCC
4._GC-05-010-1-10
GGTTCTAAAGAACCCCGGAGGGTTCTCC
5._GC-05-158-4-11
GGTTCTAAAGAACCCCGGAGGGTTCTCC
6._GC-05-158-4-11
GGTTCTAAAGAACCCCGGAGGGTT_CC
7._GC-05-010-1-10
GGTTCTAAAGAACCCCGGAGGGTTCTCC
8._GC-05-158-4-11
GGTTCTAAAGAACCCCGGAGGGTTCTCC
9._AMAZ_12
__CT_________CTCC
10._AMAZ_12
__CT_________CTCC
11._AMAZ_12
__CT_________CTCC
12._AMAZ_12
__CT_________CTCC
13._AMAZ_12
__CT_________CTCC
14._AMAZ_12
__CT_________CTCC
15._AMAZ_12
__CT__________CC
16._AMAZ_12
__CT_________CTCC
17._AMAZ_12
__CT_________CTCC
18._GC-05-158-4-11
GGTTCTAAAGAACCCCGGAGGGTTCTCC
19._AMAZ_12
__CT_________CTCC
20._AMAZ_12
__TT_________CCCC
21._RUQ_334
GGTT__GG______CTCC_
22._RUQ_334
__TT_________CCCC
23._RUQ_334b
____GG_________
24._RUQ_334
____GG_________
25._RUQ_334
CC_AA_GGAAGG_GGAAAAAGGGGG
 5758596061626364656667686970
_Input profile
TTAGCGCTCCAAGGGGCCAAGTGTAGCT
1._GC-05-158-4-11
TTAGCGCTCCAAGGGGCCAAGTGTAGCT
2._GC-05-010-1-10
TTAGCGCTCCAAGGGGCCAAGTGTAGCT
3._GC-05-010-1-10
TTAGCGCTCCAAGGGGCCAAGTGTAGCT
4._GC-05-010-1-10
TTAGCGCTCCAAGGGGCCAAGTGTAGCT
5._GC-05-158-4-11
TTAGCGCTCCAAGGGGCCAAGTGTAGCT
6._GC-05-158-4-11
TTAGCGCTCCAAGGGGCCAAGTGTAGCT
7._GC-05-010-1-10
TTAGCGCTCC_GGGGCCAAGTGTAGCT
8._GC-05-158-4-11
TTAGCGCTCC_GGGG_AAGTGTAGCT
9._AMAZ_12
__CG_CCAAGG_CCAAGTGT__
10._AMAZ_12
__CG_CCAAGG_CCAAGTGT__
11._AMAZ_12
__CG_CCAAGG_CCAAGTGT__
12._AMAZ_12
__CG_CCAAGG_CCAAGTGT__
13._AMAZ_12
__CG_CCAAGG_CCAAGTGT__
14._AMAZ_12
__CG_CCAAGG_CCAAGTGT__
15._AMAZ_12
__CG_CCAAGG_CCAAGTGT__
16._AMAZ_12
__CG_CC_GG_CCAAGTGT__
17._AMAZ_12
__CG_CC_GG__AAGTGT__
18._GC-05-158-4-11
TTAGCGCTCCAAGGGGCCAAGTGTAGCT
19._AMAZ_12
__CG_CCAAGG_CCAAGTGT__
20._AMAZ_12
__CG_TTACGG_ACGGGTGG__
21._RUQ_334
TT-CGCTTTAC_GGACGGGTGGAG_
22._RUQ_334
__CG_TTACGG_ACGGGTGG__
23._RUQ_334b
_GG______ACGG_GGAG_
24._RUQ_334
_GG______ACGG_GGAG_
25._RUQ_334
AAGGCGAGAAACGGGGACGGACCCAG_
 7172737475767778798081828384
_Input profile
CGAATTACAGACACAGACCGCCAACCCT
1._GC-05-158-4-11
CGAATTACAGACACAGACCGCCAACCCT
2._GC-05-010-1-10
CGAATTACAGACACAGACCGCCAACCCT
3._GC-05-010-1-10
CGAATTACAGACACAGACCGCCAACCCT
4._GC-05-010-1-10
CGAATTACAGACACAGACCGCCAACCCT
5._GC-05-158-4-11
CGAATTACAGACACAGACCGCCAACCCT
6._GC-05-158-4-11
CGAATTACAGACACAGACCGCCAACCCT
7._GC-05-010-1-10
CGAATTACAGACACAGACCGCCAACCCT
8._GC-05-158-4-11
CGAATTACAGACACAGACCGCCAACCCT
9._AMAZ_12
_AATT_____ACCG___CT
10._AMAZ_12
_AATT_____ACCG___CT
11._AMAZ_12
_AATT_____ACCG___CT
12._AMAZ_12
_AATT_____ACCG___CT
13._AMAZ_12
_AATT_____ACCG___CT
14._AMAZ_12
_AATT_____ACCG___CT
15._AMAZ_12
_AATT_____ACCG___CT
16._AMAZ_12
_AATT_____ACCG___CT
17._AMAZ_12
_AATT_____ACCG___CT
18._GC-05-158-4-11
CGAATTACAGACACAGACCGCCAACCCT
19._AMAZ_12
_AATT_____ACCG___CT
20._AMAZ_12
_AATT_____CCGG___CT
21._RUQ_334
________CCGG__CCCT
22._RUQ_334
_AATT_____CCGG___CT
23._RUQ_334b
_AA______CCGG__CC_
24._RUQ_334
_AA______ACGG__AC_
25._RUQ_334
__AACCAGACAA_CCCCGGATCCAG
 85868788899091929394    
_Input profile
CTTTTTAGCCCTGTCTATGGX_XX_XX_XX_X
1._GC-05-158-4-11
CTTTTTAGCCCTGTCTATGGX_XX_XX_XX_X
2._GC-05-010-1-10
CTTTTTAGCCCTGTCTATGGX_XX_XX_XX_X
3._GC-05-010-1-10
CTTTTTAGCCCTGTCTATGGX_XX_XX_XX_X
4._GC-05-010-1-10
CTTTTTAGCCCTGTCTATGGX_XX_XX_XX_X
5._GC-05-158-4-11
CTTTTTAGCCCTGTCTATGGX_XX_XX_XX_X
6._GC-05-158-4-11
CTTTTTAGCCCTGTCTATGGX_XX_XX_XX_X
7._GC-05-010-1-10
CTTTTTAGCCCTGTCTATGGX_XX_XX_XX_X
8._GC-05-158-4-11
CT_TTAGCCCTGTCTATGGX_XX_XX_XX_X
9._AMAZ_12
CTTT_AG_CTGTCT__X_XX_XX_XX_X
10._AMAZ_12
CTTT_AG_CTGTCT__X_XX_XX_XX_X
11._AMAZ_12
CTTT_AG_CTGTCT__X_XX_XX_XX_X
12._AMAZ_12
CTTT_AG_CTGTCT__X_XX_XX_XX_X
13._AMAZ_12
CTTT_AG_CTGTCT__X_XX_XX_XX_X
14._AMAZ_12
CTTT_AG_CTGTCT__X_XX_XX_XX_X
15._AMAZ_12
CTTT_AG_CTGTCT__X_XX_XX_XX_X
16._AMAZ_12
CTTT_AG_CTGTCT__X_XX_XX_XX_X
17._AMAZ_12
CT__AG_CTGTCT__X_XX_XX_XX_X
18._GC-05-158-4-11
CTTTTTAGCCCTGTCTATGGX_XX_XX_XX_X
19._AMAZ_12
CTTT_AG_CTGTCT__X_XX_XX_XX_X
20._AMAZ_12
CTTT_AA_CCTTCT__X_XX_XX_XX_X
21._RUQ_334
___AACCCCTT___X_XX_XX_XX_X
22._RUQ_334
CTCT_AA_CCTTCT__X_XX_XX_XX_X
23._RUQ_334b
_TT__CC_TT___X_XX_XX_XX_X
24._RUQ_334
_CT__CT_TT___X_XX_XX_XX_X
25._RUQ_334
AG_AG__GGAAAGAAGGX_XX_XX_XX_X

Input profile: AMAZ_12 GC-05-010-1-10

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

1._AMAZ_12 GC-05-158-4-11

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP4
 Mars, 2018

2._AMAZ_12 GC-05-010-1-10

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

3._AMAZ_12 GC-05-010-1-10

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._AMAZ_12 GC-05-010-1-10

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

5._AMAZ_12 GC-05-158-4-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._AMAZ_12 GC-05-158-4-11

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

7._AMAZ_12 GC-05-010-1-10

identical
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._AMAZ_12 GC-05-158-4-11

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

9._AMAZ_12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5110 3
 Dapeng Zhang, 2016

10._AMAZ_12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5110 5
 Dapeng Zhang, 2016

11._AMAZ_12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5110 2 > FP
 Dapeng Zhang, 2016

12._AMAZ_12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5110 4 > FP
 Dapeng Zhang, 2016

13._AMAZ_12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5411 3
 Dapeng Zhang, 2016

14._AMAZ_12

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5411 1 > FP
 Dapeng Zhang, 2016

15._AMAZ_12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5411 2 > FP
 Dapeng Zhang, 2016

16._AMAZ_12

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5110 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

17._AMAZ_12

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5411 5
 Dapeng Zhang, 2016

18._AMAZ_12 GC-05-158-4-11

99.5 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

19._AMAZ_12

98.7 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5411 4
 Dapeng Zhang, 2016

20._AMAZ_12

66.7 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B B94 T2
 Dapeng Zhang, 2016

21._AMAZ_12 RUQ_334

65.5 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

22._AMAZ_12 RUQ_334

64.1 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

23._AMAZ_12 RUQ_334b

54.8 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

24._AMAZ_12 RUQ_334

52.4 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

25._AMAZ_12 RUQ_334

38.8 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP534 3TcSNP591 4TcSNP42 5TcSNP418
6TcSNP702 7TcSNP1096 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240