SNP Profiles of PA-70 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AA	AC	TT	AC	GG	AG	CC	CC	CC	CC	GG	TT	CC	TT
1._PA_70_[PER]	AA	AC	TT	AC	_	_	_	_	CC	CC	GG	_	CC	_
2._RUQ_33	AA	AC	TT	AC	_	_	_	_	CC	CC	GG	_	CC	_
3._PA_70_[PER]	AA	AC	TT	AC	_	_	_	_	CC	CC	GG	_	CC	_
4._RUQ_33	_	_	TT	AC	_	_	CC	_	CC	_	_	TT	CC	_
5._RUQ_33	_	_	_	AC	_	_	CC	_	_	_	_	_	_	_
6._PA70[PER]	_	_	_	AC	_	_	_	_	CC	_	_	_	CC	_
7._PA_70_[PER]	AA	AA	TT	AC	_	_	_	_	TT	CT	GG	_	CC	_
8._GC-04-053-3-17	AA	AA	TT	AC	GG	AG	CC	CC	TT	CT	GG	CT	CC	CC
9._GC-04-53-3-17	AA	AC	_	AC	GG	AG	_	GG	GG	_	GG	AA	GG	AA
10._RUQ_33	AA	AC	_	AC	GG	AG	_	GG	GG	_	GG	AA	GG	AA
11._MITC-000025	AA	AC	_	AC	GG	AG	_	GG	GG	_	GG	AA	GG	AA
12._MITC-000026	AA	AC	_	AC	GG	AG	_	GG	GG	_	GG	AA	GG	AA
13._PA_70_[PER]_Fld#_185_Plt#_1	AA	CC	_	CC	GG	AA	_	GG	GG	_	GG	AA	GG	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	CC	AG	CC	CC	CG	TT	AA	TT	GG	AT	AA	CC	GG
1._PA_70_[PER]	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_	GG
2._RUQ_33	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_	GG
3._PA_70_[PER]	_	_	AG	_	_	CG	_	_	_	_	AT	AA	_	GG
4._RUQ_33	_	_	_	_	CC	_	_	_	_	GG	_	AA	CC	GG
5._RUQ_33	_	_	AG	TT	_	_	_	_	_	_	_	_	_	GG
6._PA70[PER]	_	_	_	_	GG	_	TT	_	_	GG	_	AA	CC	CC
7._PA_70_[PER]	_	_	AA	_	_	GG	_	_	_	_	AT	AT	_	CG
8._GC-04-053-3-17	AT	CC	AA	GG	CG	GG	CT	AG	TT	AG	AT	AT	CG	CG
9._GC-04-53-3-17	TT	CC	AG	GG	_	CG	AA	AG	AA	GG	AT	AA	GG	CC
10._RUQ_33	TT	CC	AG	GG	_	CG	AA	AG	AA	GG	AT	AA	GG	CC
11._MITC-000025	TT	CC	AG	GG	_	CG	AA	AG	AA	GG	AT	AA	GG	CC
12._MITC-000026	TT	CC	AG	GG	_	CG	AA	AG	AA	GG	AT	AA	GG	CC
13._PA_70_[PER]_Fld#_185_Plt#_1	TT	CC	GG	CC	_	CC	AG	AG	AA	GG	AT	AA	GG	CC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AA	TT	GT	GG	CG	CC	AG	GG	GG	TT	AG	CT	AG	CC
1._PA_70_[PER]	AA	_	_	_	CG	_	AG	GG	_	_	AG	_	_	_
2._RUQ_33	AA	_	_	_	CG	_	AG	GG	_	_	AG	_	_	_
3._PA_70_[PER]	AA	_	_	_	CG	_	AG	GG	_	_	AG	_	_	_
4._RUQ_33	_	_	_	GG	CG	CC	AG	GG	_	_	AG	CT	_	_
5._RUQ_33	_	_	_	_	CG	_	AG	_	_	_	_	CT	_	_
6._PA70[PER]	_	_	_	GG	CG	_	_	_	_	TT	_	CT	_	_
7._PA_70_[PER]	AA	_	_	_	CC	_	AG	GT	_	_	AA	_	_	_
8._GC-04-053-3-17	AA	CT	GG	AA	CC	AA	AG	GT	GG	GT	AA	CT	AA	CC
9._GC-04-53-3-17	AA	AA	AC	GG	CG	CC	AG	CC	CC	AA	AG	AG	AG	GG
10._RUQ_33	AA	AA	AC	GG	CG	CC	AG	CC	CC	AA	AG	AG	AG	GG
11._MITC-000025	AA	AA	AC	GG	CG	CC	AG	CC	CC	AA	AG	AG	AG	GG
12._MITC-000026	AA	AA	AC	GG	CG	CC	AG	CC	CC	AA	AG	AG	AG	GG
13._PA_70_[PER]_Fld#_185_Plt#_1	AA	AA	AC	GG	GG	CC	AG	CC	CC	AC	AG	GG	AG	GG

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	GG	TT	CC	AA	GG	AA	CC	CC	GG	AG	GG	TT	CC	CC
1._PA_70_[PER]	_	_	CC	_	_	_	_	_	_	_	_	_	CC	CC
2._RUQ_33	_	_	CC	_	_	_	_	_	_	_	_	_	CC	CC
3._PA_70_[PER]	_	_	CC	_	_	_	_	_	_	_	_	_	CC	CC
4._RUQ_33	GG	TT	_	_	GG	_	_	_	_	_	_	CT	CC	_
5._RUQ_33	_	_	_	_	GG	_	_	_	_	_	_	_	_	_
6._PA70[PER]	_	TT	_	AA	_	_	_	_	_	_	_	_	CC	_
7._PA_70_[PER]	_	_	CC	_	_	_	_	_	_	_	_	_	CC	TT
8._GC-04-053-3-17	GT	AA	CC	GG	AG	AG	TT	CC	GG	GG	GT	TT	CC	TT
9._GC-04-53-3-17	CC	_	GG	_	GG	AA	GG	_	GG	AG	CC	AG	GG	GG
10._RUQ_33	CC	_	GG	_	GG	AA	GG	_	GG	AG	CC	AG	GG	GG
11._MITC-000025	CC	_	GG	_	GG	AA	GG	_	GG	AG	CC	AG	GG	GG
12._MITC-000026	CC	_	GG	_	GG	AA	GG	_	GG	AG	CC	AG	GG	GG
13._PA_70_[PER]_Fld#_185_Plt#_1	CC	_	AG	_	GG	AA	GG	_	GG	AA	CC	AG	AG	AG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	TT	GG	CC	CC	CT	AA	GG	GG	AA	AG	GG	GG	GG	CC
1._PA_70_[PER]	_	_	CC	_	CT	AA	GG	_	AA	AG	GG	GG	_	_
2._RUQ_33	_	_	CC	_	CT	AA	GG	_	AA	AG	GG	GG	_	_
3._PA_70_[PER]	_	_	_	_	CT	AA	GG	_	AA	AG	GG	GG	_	_
4._RUQ_33	TT	GG	CC	CC	CT	AA	_	GG	AA	AG	GG	GG	GG	_
5._RUQ_33	_	GG	_	_	_	_	_	_	AA	AG	_	GG	GG	_
6._PA70[PER]	_	_	GG	CC	_	AA	_	GG	AA	AG	_	_	_	_
7._PA_70_[PER]	_	_	CG	_	CT	AA	GG	_	AA	AG	TT	GT	_	_
8._GC-04-053-3-17	GT	AA	CG	TT	CT	AA	GG	AA	AA	AG	TT	GT	GG	CT
9._GC-04-53-3-17	AA	GG	GG	GG	AG	AA	GG	GG	AA	AG	CC	CC	GG	_
10._RUQ_33	AA	GG	GG	GG	AG	AA	GG	GG	AA	AG	CC	CC	GG	_
11._MITC-000025	AA	GG	GG	GG	AG	AA	GG	GG	AA	AG	CC	CC	GG	_
12._MITC-000026	AA	GG	GG	GG	AG	AA	GG	GG	AA	AG	CC	CC	GG	_
13._PA_70_[PER]_Fld#_185_Plt#_1	AA	GG	GG	GG	AG	AC	GG	GG	AA	AG	_	CC	AG	_

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
_Input profile	CC	AG	CT	CC	AG	AA	AC	AG	AA	GG	CC	AA	AA	TT
1._PA_70_[PER]	_	AG	CT	_	_	_	_	_	AA	GG	_	_	_	TT
2._RUQ_33	_	AA	CT	_	_	_	_	_	AA	GG	_	_	_	TT
3._PA_70_[PER]	_	AA	CT	_	_	_	_	_	AA	GG	_	_	_	TT
4._RUQ_33	_	_	_	_	_	_	_	_	AA	GG	_	_	AA	TT
5._RUQ_33	_	AA	_	_	_	_	_	_	AA	GG	_	_	AA	_
6._PA70[PER]	CC	_	_	_	_	_	_	_	_	CC	_	_	_	_
7._PA_70_[PER]	_	GG	TT	_	_	_	_	_	CC	GG	_	_	_	TT
8._GC-04-053-3-17	CC	GG	TT	AC	GG	CC	AA	AA	CC	GG	CT	AA	AC	TT
9._GC-04-53-3-17	_	_	AG	CC	AG	AA	AC	_	AA	CC	GG	AA	AA	AA
10._RUQ_33	_	_	AG	CC	AG	AA	AC	_	AA	CC	GG	AA	AA	AA
11._MITC-000025	_	_	AG	CC	AG	AA	AC	_	AA	CC	GG	AA	AA	AA
12._MITC-000026	_	_	AG	CC	AG	AA	AC	_	AA	CC	GG	AA	AA	AA
13._PA_70_[PER]_Fld#_185_Plt#_1	_	_	GG	AC	AG	AC	AC	_	AA	CG	GG	AA	AA	AA

	85	86	87	88	89	90	91	92	93	94
_Input profile	CC	CC	CT	AA	CT	CC	TT	TT	AT	GG	X_X	X_X	X_X	X_X
1._PA_70_[PER]	CC	CC	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X
2._RUQ_33	CC	CC	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X
3._PA_70_[PER]	CC	_	_	AA	_	CC	TT	TT	_	_	X_X	X_X	X_X	X_X
4._RUQ_33	_	_	_	AA	CC	CC	TT	_	_	_	X_X	X_X	X_X	X_X
5._RUQ_33	_	CC	_	_	CT	_	TT	_	_	_	X_X	X_X	X_X	X_X
6._PA70[PER]	CC	_	_	_	_	_	_	_	_	_	X_X	X_X	X_X	X_X
7._PA_70_[PER]	TT	TT	_	AG	_	CT	TT	TT	_	_	X_X	X_X	X_X	X_X
8._GC-04-053-3-17	TT	TT	TT	AG	CT	CT	TT	TT	AA	GG	X_X	X_X	X_X	X_X
9._GC-04-53-3-17	GG	_	AG	_	_	GG	AA	AA	AT	GG	X_X	X_X	X_X	X_X
10._RUQ_33	GG	_	AG	_	_	GG	AA	AA	AT	GG	X_X	X_X	X_X	X_X
11._MITC-000025	GG	_	AG	_	_	GG	AA	AA	AT	GG	X_X	X_X	X_X	X_X
12._MITC-000026	GG	_	AG	_	_	GG	AA	AA	AT	GG	X_X	X_X	X_X	X_X
13._PA_70_[PER]_Fld#_185_Plt#_1	GG	_	AG	_	_	GG	AA	AA	TT	GG	X_X	X_X	X_X	X_X

Input profile: PA_70_[PER] GC-04-053-3-17

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP2 (verde)

1._PA_70_[PER]

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4317 6 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

2._PA_70_[PER] RUQ_33

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._PA_70_[PER]

98.7 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D634

Dapeng Zhang, 2016

4._PA_70_[PER] RUQ_33

97.7 %
43 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

5._PA_70_[PER] RUQ_33

92.9 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

6._PA_70_[PER] PA70[PER]

84 %
25 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam

Location: CEFORTT

Jocelyn De Wever et al., 2019

7._PA_70_[PER]

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 4317 2 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

8._PA_70_[PER] GC-04-053-3-17

60.1 %
94 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1 (roxo)

9._PA_70_[PER] GC-04-53-3-17

49.4 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 4, Block: 3, Rep: 17, Tree: 6 > FP2 (verde)

Notes: MCCS_Structure_refs_above_0.9membership

10._PA_70_[PER] RUQ_33

49.4 %
80 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

11._PA_70_[PER] MITC-000025

49.4 %
80 shared markers

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USDA-SHRS, United States of America

12._PA_70_[PER] MITC-000026

49.4 %
80 shared markers

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USDA-SHRS, United States of America

13._PA_70_[PER] PA_70_[PER]_Fld#_185_Plt#_1

44.3 %
79 shared markers

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USDA-TARS, United States of America

Location: Field: 185, Tree: 1

Key to SNP Markers

Key to SNP Markers

1	TcSNP1075	2	TcSNP1350	3	TcSNP534	4	TcSNP591	5	TcSNP42
6	TcSNP418	7	TcSNP702	8	TcSNP1096	9	TcSNP1060	10	TcSNP1165
11	TcSNP429	12	TcSNP75	13	TcSNP891	14	TcSNP122	15	TcSNP316
16	TcSNP521	17	TcSNP1062	18	TcSNP836	19	TcSNP878	20	TcSNP929
21	TcSNP413	22	TcSNP653	23	TcSNP1149	24	TcSNP174	25	TcSNP32
26	TcSNP372	27	TcSNP448	28	TcSNP872	29	TcSNP953	30	TcSNP1034
31	TcSNP1175	32	TcSNP1111	33	TcSNP577	34	TcSNP90	35	TcSNP998
36	TcSNP150	37	TcSNP28	38	TcSNP751	39	TcSNP1484	40	TcSNP602
41	TcSNP561	42	TcSNP894	43	TcSNP1063	44	TcSNP1126	45	TcSNP1270
46	TcSNP606	47	TcSNP329	48	TcSNP689	49	TcSNP944	50	TcSNP1242
51	TcSNP1383	52	TcSNP547	53	TcSNP776	54	TcSNP1309	55	TcSNP151
56	TcSNP1520	57	TcSNP799	58	TcSNP899	59	TcSNP226	60	TcSNP1439
61	TcSNP1442	62	TcSNP193	63	TcSNP25	64	TcSNP364	65	TcSNP144
66	TcSNP230	67	TcSNP560	68	TcSNP723	69	TcSNP731	70	TcSNP701
71	TcSNP1041	72	TcSNP645	73	TcSNP917	74	Tcm003s01336581	75	Tcm003s07402719
76	Tcm001s00947643	77	Tcm006s26664133	78	Tcm002s20575712	79	TcSNP529	80	TcSNP1458
81	TcSNP60	82	TcSNP430	83	TcSNP823	84	TcSNP619	85	TcSNP994
86	TcSNP1144	87	TcSNP1156	88	TcSNP469	89	TcSNP999	90	TcSNP242
91	TcSNP1253	92	TcSNP1414	93	TcSNP154	94	TcSNP240