SNP Profiles of PA 70 [PER]   View Data

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 Key

 1234567891011121314
_Input profile
AAAATTACGGAGCCCCTTCTGGCTCCCC
1._PA_70_[PER]
AAAATTAC____TTCTGG_CC_
2._PA_70_[PER]
AAACTTAC____CCCCGG_CC_
3._PA_70_[PER]
AAACTTAC____CCCCGG_CC_
4._PA70[PER]
___AC____CC___CC_
5._RUQ_33
AAACTTAC____CCCCGG_CC_
6._RUQ_33
__TTAC__CC_CC__TTCC_
7._GC-04-053-3-17
AAACTTACGGAGCCCCCCCCGGTTCCTT
8._GC-04-53-3-17
AAAC_ACGGAG_GGGG_GGAAGGAA
9._RUQ_33
AAAC_ACGGAG_GGGG_GGAAGGAA
10._MITC-000025
AAAC_ACGGAG_GGGG_GGAAGGAA
11._MITC-000026
AAAC_ACGGAG_GGGG_GGAAGGAA
12._PA_70_[PER]_Fld#_185_Plt#_1
AACC_CCGGAA_GGGG_GGAAGGAA
 1516171819202122232425262728
_Input profile
ATCCAAAAGGCGGGCTAGTTAGATATCG
1._PA_70_[PER]
___AA__GG____ATAT_
2._PA_70_[PER]
___AG__CG____ATAA_
3._PA_70_[PER]
___AG__CG____ATAA_
4._PA70[PER]
__GG__GG_TT__GG_AACC
5._RUQ_33
___AG__CG____ATAA_
6._RUQ_33
_____CC____GG_AACC
7._GC-04-053-3-17
AACC_AGCCCCCGTTAATTGGATAACC
8._GC-04-53-3-17
TTCCGGAGGG_CGAAAGAAGGATAAGG
9._RUQ_33
TTCCGGAGGG_CGAAAGAAGGATAAGG
10._MITC-000025
TTCCGGAGGG_CGAAAGAAGGATAAGG
11._MITC-000026
TTCCGGAGGG_CGAAAGAAGGATAAGG
12._PA_70_[PER]_Fld#_185_Plt#_1
TTCCGGGGCC_CCAGAGAAGGATAAGG
 2930313233343536373839404142
_Input profile
CGAACTGGAACCAAAGGTGGGTAACTAA
1._PA_70_[PER]
CGAA___CC_AGGT__AA__
2._PA_70_[PER]
GGAA___CG_AGGG__AG__
3._PA_70_[PER]
GGAA___CG_AGGG__AG__
4._PA70[PER]
CC___GGCG____TT_CT_
5._RUQ_33
GGAA___CG_AGGG__AG__
6._RUQ_33
GG___GGCGCCAGGG__AGCT_
7._GC-04-053-3-17
GGAATTGTGGCGCCAGGGGGTTAGCTAG
8._GC-04-53-3-17
CCAAAAACGGCGCCAGCCCCAAAGAGAG
9._RUQ_33
CCAAAAACGGCGCCAGCCCCAAAGAGAG
10._MITC-000025
CCAAAAACGGCGCCAGCCCCAAAGAGAG
11._MITC-000026
CCAAAAACGGCGCCAGCCCCAAAGAGAG
12._PA_70_[PER]_Fld#_185_Plt#_1
CCAAAAACGGGGCCAGCCCCACAGGGAG
 4344454647484950515253545556
_Input profile
CCGTAACCGGAGAGTTCCGGGGGTTTCC
1._PA_70_[PER]
___CC_________CC
2._PA_70_[PER]
___CC_________CC
3._PA_70_[PER]
___CC_________CC
4._PA70[PER]
__TT_AA________CC
5._RUQ_33
___CC_________CC
6._RUQ_33
_GGTT__GG______CTCC
7._GC-04-053-3-17
CCGGTTCCAAGGAACCCCGGAGGGTTCC
8._GC-04-53-3-17
GGCC_GG_GGAAGG_GGAGCCAGGG
9._RUQ_33
GGCC_GG_GGAAGG_GGAGCCAGGG
10._MITC-000025
GGCC_GG_GGAAGG_GGAGCCAGGG
11._MITC-000026
GGCC_GG_GGAAGG_GGAGCCAGGG
12._PA_70_[PER]_Fld#_185_Plt#_1
GGCC_AG_GGAAGG_GGAACCAGAG
 5758596061626364656667686970
_Input profile
TTGTAACGTTCTAAGGAAAAAGTTGTGG
1._PA_70_[PER]
TT__CG_CTAAGG_AAAGTTGT_
2._PA_70_[PER]
CC____CTAAGG_AAAGGGGG_
3._PA_70_[PER]
CC__CC_CTAAGG_AAAGGGGG_
4._PA70[PER]
___GGCC_AA_GGAAAG___
5._RUQ_33
CC__CC_CTAAGG_AAAGGGGG_
6._RUQ_33
_TTGGCCCCCTAA_GGAAAGGGGGGG
7._GC-04-053-3-17
CCTTGGCCCCCTAAGGGGAAAGGGGGGG
8._GC-04-53-3-17
GGAAGGGGGGAGAAGGGGAAAGCCCCGG
9._RUQ_33
GGAAGGGGGGAGAAGGGGAAAGCCCCGG
10._MITC-000025
GGAAGGGGGGAGAAGGGGAAAGCCCCGG
11._MITC-000026
GGAAGGGGGGAGAAGGGGAAAGCCCCGG
12._PA_70_[PER]_Fld#_185_Plt#_1
AGAAGGGGGGAGACGGGGAAAG_CCAG
 7172737475767778798081828384
_Input profile
CTCCGGTTACGGCCAAAACCGGCTAAAC
1._PA_70_[PER]
__GGTT_____CCGG___
2._PA_70_[PER]
__AACT_____AAGG___
3._PA_70_[PER]
__AGCT_____AAGG___
4._PA70[PER]
_CC________CC___
5._RUQ_33
__AACT_____AAGG___
6._RUQ_33
_________AAGG__AA
7._GC-04-053-3-17
CCCCAGCTCCAGAAACAGAAGGCCAAAA
8._GC-04-53-3-17
___AGCCAGAAAC_AACCGGAAAA
9._RUQ_33
___AGCCAGAAAC_AACCGGAAAA
10._MITC-000025
___AGCCAGAAAC_AACCGGAAAA
11._MITC-000026
___AGCCAGAAAC_AACCGGAAAA
12._PA_70_[PER]_Fld#_185_Plt#_1
___GGACAGACAC_AACGGGAAAA
 8586878889909192939495   
_Input profile
TTTTTTTTAGCTCTTTTTAAGGX_XX_XX_X
1._PA_70_[PER]
TTTTTT_AG_CTTTTT__X_XX_XX_X
2._PA_70_[PER]
TTCC__AA_CCTTTT__X_XX_XX_X
3._PA_70_[PER]
TTCCCC_AA_CCTTTT__X_XX_XX_X
4._PA70[PER]
_CC_________X_XX_XX_X
5._RUQ_33
TTCCCC_AA_CCTTTT__X_XX_XX_X
6._RUQ_33
TT___AACCCCTT___X_XX_XX_X
7._GC-04-053-3-17
TTCCCCCTAACTCCTTTTATGGX_XX_XX_X
8._GC-04-53-3-17
AAGG_AG__GGAAAAATGGX_XX_XX_X
9._RUQ_33
AAGG_AG__GGAAAAATGGX_XX_XX_X
10._MITC-000025
AAGG_AG__GGAAAAATGGX_XX_XX_X
11._MITC-000026
AAGG_AG__GGAAAAATGGX_XX_XX_X
12._PA_70_[PER]_Fld#_185_Plt#_1
AAGG_AG__GGAAAATTGGX_XX_XX_X

Input profile: PA_70_[PER] GC-04-053-3-17

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1 (roxo)
 Mars, 2018

1._PA_70_[PER]

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 2 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

2._PA_70_[PER]

57.9 %
38 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: MARPER D634
 Dapeng Zhang, 2016

3._PA_70_[PER]

56.3 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 4317 6 > FP
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

4._PA_70_[PER] PA70[PER]

32.7 %
26 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

5._PA_70_[PER] RUQ_33

55 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

6._PA_70_[PER] RUQ_33

38.4 %
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

7._PA_70_[PER] GC-04-053-3-17

46.3 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP2 (verde)
 Mars, 2018

8._PA_70_[PER] GC-04-53-3-17

29.6 %
81 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 4, Block: 3, Rep: 17, Tree: 6 > FP2 (verde)
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

9._PA_70_[PER] RUQ_33

29.6 %
81 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

10._PA_70_[PER] MITC-000025

29.6 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

11._PA_70_[PER] MITC-000026

29.6 %
81 shared markers

USDA-SHRS, United States of America
 Mars, 2018

12._PA_70_[PER] PA_70_[PER]_Fld#_185_Plt#_1

23.8 %
80 shared markers

USDA-TARS, United States of America
Location: Field: 185, Tree: 1
 Mars, 2018

 

 Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240